RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 NISCHQ9Y2I1 1504 aa44.92■■■■■ 4.78
NUP50-218ENST00000493456 ABCC9O60706 1549 aa40.79■■■■■ 4.12
NUP50-218ENST00000493456 CCDC180Q9P1Z9 1646 aa40.53■■■■■ 4.08
NUP50-218ENST00000493456 RB1CC1Q8TDY2 1594 aa38.74■■■■□ 3.79
NUP50-218ENST00000493456 DNAJC5BQ9UF47 199 aa38.53■■■■□ 3.76
NUP50-218ENST00000493456 NACADO15069 1562 aa38.4■■■■□ 3.74
NUP50-218ENST00000493456 DCAF8L2P0C7V8 631 aa37.96■■■■□ 3.67
NUP50-218ENST00000493456 PABPN1Q86U42 306 aaKnown RBP eCLIP37.86■■■■□ 3.65
NUP50-218ENST00000493456 UNC13AQ9UPW8 1703 aa37.8■■■■□ 3.64
NUP50-218ENST00000493456 MYO15BQ96JP2 1530 aa37.8■■■■□ 3.64
NUP50-218ENST00000493456 BICRAQ9NZM4 1560 aa37.58■■■■□ 3.61
NUP50-218ENST00000493456 ZCCHC6Q5VYS8 1495 aaKnown RBP37.18■■■■□ 3.54
NUP50-218ENST00000493456 SHROOM4Q9ULL8 1493 aa37.18■■■■□ 3.54
NUP50-218ENST00000493456 DCAF1Q9Y4B6 1507 aa37.15■■■■□ 3.54
NUP50-218ENST00000493456 CC2D2AQ9P2K1 1620 aa36.86■■■■□ 3.49
NUP50-218ENST00000493456 SCRIBQ14160 1630 aa36.83■■■■□ 3.49
NUP50-218ENST00000493456 CECR2Q9BXF3 1484 aa36.82■■■■□ 3.49
NUP50-218ENST00000493456 EIF4G1Q04637 1599 aaKnown RBP36.72■■■■□ 3.47
NUP50-218ENST00000493456 DNAJC5Q9H3Z4 198 aa35.72■■■■□ 3.31
NUP50-218ENST00000493456 NCAPD3P42695 1498 aa35.43■■■■□ 3.26
NUP50-218ENST00000493456 CUX2O14529 1486 aa35.41■■■■□ 3.26
NUP50-218ENST00000493456 ERCC6Q03468 1493 aa35.29■■■■□ 3.24
NUP50-218ENST00000493456 ATAD2BQ9ULI0 1458 aa35.25■■■■□ 3.23
NUP50-218ENST00000493456 SMARCA2P51531 1590 aa35.17■■■■□ 3.22
NUP50-218ENST00000493456 HMGXB3Q12766 1538 aa35.17■■■■□ 3.22
NUP50-218ENST00000493456 SMARCA4P51532 1647 aa35.14■■■■□ 3.22
NUP50-218ENST00000493456 BAZ1AQ9NRL2 1556 aaPredicted RBP34.93■■■■□ 3.18
NUP50-218ENST00000493456 NESP48681 1621 aa34.92■■■■□ 3.18
NUP50-218ENST00000493456 BAZ1BQ9UIG0 1483 aaKnown RBP34.9■■■■□ 3.18
NUP50-218ENST00000493456 PEG3Q9GZU2 1588 aa34.83■■■■□ 3.17
NUP50-218ENST00000493456 THOC2Q8NI27 1593 aaKnown RBP34.72■■■■□ 3.15
NUP50-218ENST00000493456 LAMC3Q9Y6N6 1575 aa34.72■■■■□ 3.15
NUP50-218ENST00000493456 MROH2BQ7Z745 1585 aa34.57■■■■□ 3.13
NUP50-218ENST00000493456 PDS5BQ9NTI5 1447 aa34.53■■■■□ 3.12
NUP50-218ENST00000493456 KIF21AQ7Z4S6 1674 aa34.48■■■■□ 3.11
NUP50-218ENST00000493456 CADPSQ9ULU8 1353 aa34.32■■■■□ 3.08
NUP50-218ENST00000493456 MRC2Q9UBG0 1479 aa34.23■■■■□ 3.07
NUP50-218ENST00000493456 WDR62O43379 1518 aa34.18■■■■□ 3.06
NUP50-218ENST00000493456 WIZO95785 1651 aa34.13■■■■□ 3.05
NUP50-218ENST00000493456 CEP164Q9UPV0 1460 aa34.02■■■■□ 3.04
NUP50-218ENST00000493456 TRIM41Q8WV44 630 aa33.95■■■■□ 3.03
NUP50-218ENST00000493456 FANCD2Q9BXW9 1451 aa33.93■■■■□ 3.02
NUP50-218ENST00000493456 CFTRP13569 1480 aa33.87■■■■□ 3.01
NUP50-218ENST00000493456 TOP2AP11388 1531 aaKnown RBP33.74■■■□□ 2.99
NUP50-218ENST00000493456 RSF1Q96T23 1441 aaPredicted RBP33.73■■■□□ 2.99
NUP50-218ENST00000493456 URB2Q14146 1524 aaKnown RBP33.66■■■□□ 2.98
NUP50-218ENST00000493456 OSCARQ8IYS5 282 aa33.65■■■□□ 2.98
NUP50-218ENST00000493456 PRDM2Q13029 1718 aa33.5■■■□□ 2.95
NUP50-218ENST00000493456 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
NUP50-218ENST00000493456 CCDC88BA6NC98 1476 aa33.31■■■□□ 2.92
NUP50-218ENST00000493456 ZNF608Q9ULD9 1512 aaPredicted RBP33.28■■■□□ 2.92
NUP50-218ENST00000493456 RIMBP3CA6NJZ7 1639 aa33.27■■■□□ 2.92
NUP50-218ENST00000493456 RIMBP3BA6NNM3 1639 aa33.27■■■□□ 2.92
NUP50-218ENST00000493456 RIMBP3Q9UFD9 1639 aa33.27■■■□□ 2.92
NUP50-218ENST00000493456 TOPBP1Q92547 1522 aa33.24■■■□□ 2.91
NUP50-218ENST00000493456 ABCC8Q09428 1581 aa33.2■■■□□ 2.91
NUP50-218ENST00000493456 ARHGEF11O15085 1522 aa33.14■■■□□ 2.9
NUP50-218ENST00000493456 EIF4G3O43432 1585 aaKnown RBP33.13■■■□□ 2.89
NUP50-218ENST00000493456 DNMBPQ6XZF7 1577 aa33.12■■■□□ 2.89
NUP50-218ENST00000493456 TARBP1Q13395 1621 aaKnown RBP32.98■■■□□ 2.87
NUP50-218ENST00000493456 AQRO60306 1485 aaKnown RBP eCLIP32.93■■■□□ 2.866e-6■□□□□ 8.5
NUP50-218ENST00000493456 CHD1O14646 1710 aa32.92■■■□□ 2.86
NUP50-218ENST00000493456 POLA1P09884 1462 aaPredicted RBP32.88■■■□□ 2.85
NUP50-218ENST00000493456 CYB5RLQ6IPT4 315 aa32.85■■■□□ 2.85
NUP50-218ENST00000493456 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
NUP50-218ENST00000493456 FBLN2P98095 1184 aa32.76■■■□□ 2.83
NUP50-218ENST00000493456 RAD54L2Q9Y4B4 1467 aa32.72■■■□□ 2.83
NUP50-218ENST00000493456 SOGA1O94964 1423 aa32.71■■■□□ 2.83
NUP50-218ENST00000493456 WDR97A6NE52 1622 aa32.71■■■□□ 2.83
NUP50-218ENST00000493456 TDRD9Q8NDG6 1382 aaKnown RBP32.66■■■□□ 2.82
NUP50-218ENST00000493456 SNAPC4Q5SXM2 1469 aa32.62■■■□□ 2.81
NUP50-218ENST00000493456 FGD5Q6ZNL6 1462 aa32.61■■■□□ 2.81
NUP50-218ENST00000493456 TRHP20396 242 aaPredicted RBP32.61■■■□□ 2.81
NUP50-218ENST00000493456 CLASP1Q7Z460 1538 aa32.58■■■□□ 2.81
NUP50-218ENST00000493456 MAGI1Q96QZ7 1491 aaPredicted RBP32.57■■■□□ 2.8
NUP50-218ENST00000493456 SYNJ1O43426 1573 aa32.54■■■□□ 2.8
NUP50-218ENST00000493456 CUX1P39880 1505 aa32.52■■■□□ 2.8
NUP50-218ENST00000493456 GRIN2BQ13224 1484 aa32.5■■■□□ 2.79
NUP50-218ENST00000493456 CHMP7Q8WUX9 453 aaPredicted RBP32.5■■■□□ 2.79
NUP50-218ENST00000493456 SYNJ2O15056 1496 aa32.44■■■□□ 2.78
NUP50-218ENST00000493456 PBRM1Q86U86 1689 aa32.34■■■□□ 2.77
NUP50-218ENST00000493456 GAPVD1Q14C86 1478 aa32.33■■■□□ 2.77
NUP50-218ENST00000493456 ABCA10Q8WWZ4 1543 aa32.26■■■□□ 2.76
NUP50-218ENST00000493456 ABCA5Q8WWZ7 1642 aa32.24■■■□□ 2.75
NUP50-218ENST00000493456 GRIN2AQ12879 1464 aa32.08■■■□□ 2.73
NUP50-218ENST00000493456 WRNQ14191 1432 aaPredicted RBP eCLIP32.04■■■□□ 2.72
NUP50-218ENST00000493456 ADAMTS12P58397 1594 aa32.03■■■□□ 2.72
NUP50-218ENST00000493456 NUP160Q12769 1436 aa32■■■□□ 2.71
NUP50-218ENST00000493456 ERCC6L2Q5T890 1561 aa31.98■■■□□ 2.71
NUP50-218ENST00000493456 CEP170Q5SW79 1584 aa31.96■■■□□ 2.71
NUP50-218ENST00000493456 AEBP2Q6ZN18 517 aaPredicted RBP31.96■■■□□ 2.71
NUP50-218ENST00000493456 BIVM-ERCC5R4GMW8 1640 aa31.94■■■□□ 2.7
NUP50-218ENST00000493456 TOP2BQ02880 1626 aa31.93■■■□□ 2.7
NUP50-218ENST00000493456 FHAD1B1AJZ9 1412 aa31.92■■■□□ 2.7
NUP50-218ENST00000493456 SHROOM2Q13796 1616 aa31.9■■■□□ 2.7
NUP50-218ENST00000493456 SUPT5HO00267 1087 aaKnown RBP31.87■■■□□ 2.69
NUP50-218ENST00000493456 ERICH3Q5RHP9 1530 aa31.86■■■□□ 2.69
NUP50-218ENST00000493456 PRG4Q92954 1404 aaPredicted RBP31.68■■■□□ 2.66
NUP50-218ENST00000493456 KIF13AQ9H1H9 1805 aa31.63■■■□□ 2.65
NUP50-218ENST00000493456 JPH4Q96JJ6 628 aa31.61■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms