RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 NCOA2Q15596 1464 aa19.38■□□□□ 0.69
HDAC6-219ENST00000476625 KDM5DQ9BY66 1539 aa19.38■□□□□ 0.69
HDAC6-219ENST00000476625 PPP6R1Q9UPN7 881 aa19.38■□□□□ 0.69
HDAC6-219ENST00000476625 CCDC141Q6ZP82 1450 aa19.37■□□□□ 0.69
HDAC6-219ENST00000476625 DHX29Q7Z478 1369 aaKnown RBP19.37■□□□□ 0.69
HDAC6-219ENST00000476625 RTEL1-TNFRSF6BF6WH68 1400 aa19.36■□□□□ 0.69
HDAC6-219ENST00000476625 KIF3BO15066 747 aa19.36■□□□□ 0.69
HDAC6-219ENST00000476625 TNRQ92752 1358 aa19.35■□□□□ 0.69
HDAC6-219ENST00000476625 STRCP1A6NGW2 1772 aa19.35■□□□□ 0.69
HDAC6-219ENST00000476625 PZPP20742 1482 aa19.35■□□□□ 0.69
HDAC6-219ENST00000476625 ALKQ9UM73 1620 aa19.33■□□□□ 0.69
HDAC6-219ENST00000476625 SCAF1Q9H7N4 1312 aaKnown RBP19.33■□□□□ 0.69
HDAC6-219ENST00000476625 VWDEQ8N2E2 1590 aa19.33■□□□□ 0.69
HDAC6-219ENST00000476625 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.32■□□□□ 0.68
HDAC6-219ENST00000476625 CEP152O94986 1710 aa19.32■□□□□ 0.68
HDAC6-219ENST00000476625 PIP4K2BP78356 416 aa19.32■□□□□ 0.68
HDAC6-219ENST00000476625 MED1Q15648 1581 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-219ENST00000476625 ARHGEF5Q12774 1597 aa19.3■□□□□ 0.68
HDAC6-219ENST00000476625 CFAP65Q6ZU64 1925 aaKnown RBP19.29■□□□□ 0.68
HDAC6-219ENST00000476625 SHANK2Q9UPX8 1470 aa19.29■□□□□ 0.68
HDAC6-219ENST00000476625 HSPA1LP34931 641 aa19.29■□□□□ 0.68
HDAC6-219ENST00000476625 RNF17Q9BXT8 1623 aaKnown RBP19.29■□□□□ 0.68
HDAC6-219ENST00000476625 IQGAP1P46940 1657 aa19.28■□□□□ 0.68
HDAC6-219ENST00000476625 MROH1Q8NDA8 1641 aa19.28■□□□□ 0.68
HDAC6-219ENST00000476625 UGGT1Q9NYU2 1555 aa19.27■□□□□ 0.68
HDAC6-219ENST00000476625 CPS1P31327 1500 aa19.27■□□□□ 0.68
HDAC6-219ENST00000476625 WASHC2CQ9Y4E1 1318 aa19.26■□□□□ 0.67
HDAC6-219ENST00000476625 SENP3Q9H4L4 574 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-219ENST00000476625 ABCC3O15438 1527 aa19.25■□□□□ 0.67
HDAC6-219ENST00000476625 DEPDC5O75140 1603 aa19.25■□□□□ 0.67
HDAC6-219ENST00000476625 MIA2Q96PC5 1412 aa19.25■□□□□ 0.67
HDAC6-219ENST00000476625 FAM135AQ9P2D6 1515 aa19.24■□□□□ 0.67
HDAC6-219ENST00000476625 ZC3H13Q5T200 1668 aaKnown RBP19.24■□□□□ 0.67
HDAC6-219ENST00000476625 NPHP4O75161 1426 aaPredicted RBP19.23■□□□□ 0.67
HDAC6-219ENST00000476625 MAST1Q9Y2H9 1570 aa19.23■□□□□ 0.67
HDAC6-219ENST00000476625 UBR1Q8IWV7 1749 aa19.22■□□□□ 0.67
HDAC6-219ENST00000476625 NLRP1Q9C000 1473 aa19.22■□□□□ 0.67
HDAC6-219ENST00000476625 LRRC9Q6ZRR7 1453 aa19.21■□□□□ 0.67
HDAC6-219ENST00000476625 EIF2AK4Q9P2K8 1649 aaKnown RBP19.2■□□□□ 0.66
HDAC6-219ENST00000476625 ANKLE2Q86XL3 938 aa19.19■□□□□ 0.66
HDAC6-219ENST00000476625 MED14O60244 1454 aa19.19■□□□□ 0.66
HDAC6-219ENST00000476625 ERVK-7P63135 1459 aa19.19■□□□□ 0.66
HDAC6-219ENST00000476625 XIRP1Q702N8 1843 aaKnown RBP19.18■□□□□ 0.66
HDAC6-219ENST00000476625 KANK4Q5T7N3 995 aaPredicted RBP19.18■□□□□ 0.66
HDAC6-219ENST00000476625 CROCC2H7BZ55 1655 aa19.17■□□□□ 0.66
HDAC6-219ENST00000476625 LRRC7Q96NW7 1537 aa19.16■□□□□ 0.66
HDAC6-219ENST00000476625 LOC105371045A0A1W2PR82 267 aa19.15■□□□□ 0.66
HDAC6-219ENST00000476625 TOM1O60784 492 aa19.15■□□□□ 0.66
HDAC6-219ENST00000476625 THEMISQ8N1K5 641 aaPredicted RBP19.15■□□□□ 0.66
HDAC6-219ENST00000476625 VPS8Q8N3P4 1428 aa19.15■□□□□ 0.66
HDAC6-219ENST00000476625 TSPY4P0CV99 314 aa19.14■□□□□ 0.65
HDAC6-219ENST00000476625 TSPY10P0CW01 314 aa19.14■□□□□ 0.65
HDAC6-219ENST00000476625 SYNMO15061 1565 aa19.14■□□□□ 0.65
HDAC6-219ENST00000476625 RSPH4AQ5TD94 716 aa19.12■□□□□ 0.65
HDAC6-219ENST00000476625 PIK3C2BO00750 1634 aa19.11■□□□□ 0.65
HDAC6-219ENST00000476625 MYOM3Q5VTT5 1437 aa19.09■□□□□ 0.65
HDAC6-219ENST00000476625 PRDM15P57071 1507 aaPredicted RBP19.08■□□□□ 0.64
HDAC6-219ENST00000476625 DUOX2Q9NRD8 1548 aa19.08■□□□□ 0.64
HDAC6-219ENST00000476625 LTKP29376 864 aa19.07■□□□□ 0.64
HDAC6-219ENST00000476625 SCAF11Q99590 1463 aaKnown RBP19.07■□□□□ 0.64
HDAC6-219ENST00000476625 PTPN23Q9H3S7 1636 aa19.06■□□□□ 0.64
HDAC6-219ENST00000476625 ARHGAP23Q9P227 1491 aa19.05■□□□□ 0.64
HDAC6-219ENST00000476625 SLIT1O75093 1534 aa19.04■□□□□ 0.64
HDAC6-219ENST00000476625 ABCC5O15440 1437 aa19.03■□□□□ 0.64
HDAC6-219ENST00000476625 KIF15Q9NS87 1388 aa19.03■□□□□ 0.64
HDAC6-219ENST00000476625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.02■□□□□ 0.642e-7■■□□□ 14.2
HDAC6-219ENST00000476625 PHF23Q9BUL5 403 aaPredicted RBP19.02■□□□□ 0.64
HDAC6-219ENST00000476625 RRP7BPQ9NSQ0 103 aa19.02■□□□□ 0.64
HDAC6-219ENST00000476625 MAP3K1Q13233 1512 aa19.01■□□□□ 0.63
HDAC6-219ENST00000476625 TXNDC2Q86VQ3 553 aa18.99■□□□□ 0.63
HDAC6-219ENST00000476625 MYO5BQ9ULV0 1848 aa18.98■□□□□ 0.63
HDAC6-219ENST00000476625 RBM33Q96EV2 1170 aaKnown RBP18.98■□□□□ 0.63
HDAC6-219ENST00000476625 DAPK1P53355 1430 aa18.98■□□□□ 0.63
HDAC6-219ENST00000476625 ARHGAP31Q2M1Z3 1444 aa18.97■□□□□ 0.63
HDAC6-219ENST00000476625 ERBINQ96RT1 1412 aa18.97■□□□□ 0.63
HDAC6-219ENST00000476625 RGS17Q9UGC6 210 aaPredicted RBP18.96■□□□□ 0.63
HDAC6-219ENST00000476625 CHIC2Q9UKJ5 165 aa18.95■□□□□ 0.62
HDAC6-219ENST00000476625 ROBO1Q9Y6N7 1651 aa18.95■□□□□ 0.62
HDAC6-219ENST00000476625 EFCAB6Q5THR3 1501 aa18.94■□□□□ 0.62
HDAC6-219ENST00000476625 TMEM2Q9UHN6 1383 aa18.93■□□□□ 0.62
HDAC6-219ENST00000476625 TET3O43151 1660 aa18.92■□□□□ 0.62
HDAC6-219ENST00000476625 KDM5AP29375 1690 aaKnown RBP18.92■□□□□ 0.62
HDAC6-219ENST00000476625 FGD6Q6ZV73 1430 aa18.91■□□□□ 0.62
HDAC6-219ENST00000476625 ADGRB3O60242 1522 aa18.9■□□□□ 0.62
HDAC6-219ENST00000476625 GCC2Q8IWJ2 1684 aa18.9■□□□□ 0.62
HDAC6-219ENST00000476625 SLC26A8Q96RN1 970 aa18.9■□□□□ 0.62
HDAC6-219ENST00000476625 SETD1AO15047 1707 aaKnown RBP18.9■□□□□ 0.62
HDAC6-219ENST00000476625 LMTK2Q8IWU2 1503 aa18.9■□□□□ 0.62
HDAC6-219ENST00000476625 IDI1Q13907 227 aa18.89■□□□□ 0.61
HDAC6-219ENST00000476625 TMEM94Q12767 1356 aa18.89■□□□□ 0.61
HDAC6-219ENST00000476625 EID1Q9Y6B2 187 aa18.88■□□□□ 0.61
HDAC6-219ENST00000476625 NWD1Q149M9 1564 aa18.87■□□□□ 0.61
HDAC6-219ENST00000476625 STAG3Q9UJ98 1225 aa18.87■□□□□ 0.61
HDAC6-219ENST00000476625 NOS1P29475 1434 aa18.85■□□□□ 0.61
HDAC6-219ENST00000476625 KANK1Q14678 1352 aa18.85■□□□□ 0.61
HDAC6-219ENST00000476625 PHLPP1O60346 1717 aa18.84■□□□□ 0.61
HDAC6-219ENST00000476625 POTEAQ6S8J7 498 aa18.83■□□□□ 0.6
HDAC6-219ENST00000476625 FAM135BQ49AJ0 1406 aa18.83■□□□□ 0.6
HDAC6-219ENST00000476625 ANKRD30AQ9BXX3 1397 aa18.82■□□□□ 0.6
HDAC6-219ENST00000476625 CHD2O14647 1828 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms