RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 NISCHQ9Y2I1 1504 aa30.61■■■□□ 2.49
HDAC6-219ENST00000476625 ABCC9O60706 1549 aa27.89■■■□□ 2.06
HDAC6-219ENST00000476625 CCDC180Q9P1Z9 1646 aa27.59■■■□□ 2.01
HDAC6-219ENST00000476625 DNAJC5BQ9UF47 199 aa26.38■■□□□ 1.81
HDAC6-219ENST00000476625 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.81
HDAC6-219ENST00000476625 NACADO15069 1562 aa26.05■■□□□ 1.76
HDAC6-219ENST00000476625 UNC13AQ9UPW8 1703 aa26■■□□□ 1.75
HDAC6-219ENST00000476625 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
HDAC6-219ENST00000476625 PABPN1Q86U42 306 aaKnown RBP eCLIP25.91■■□□□ 1.74
HDAC6-219ENST00000476625 BICRAQ9NZM4 1560 aa25.71■■□□□ 1.71
HDAC6-219ENST00000476625 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
HDAC6-219ENST00000476625 ZCCHC6Q5VYS8 1495 aaKnown RBP25.34■■□□□ 1.65
HDAC6-219ENST00000476625 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
HDAC6-219ENST00000476625 CC2D2AQ9P2K1 1620 aa25.19■■□□□ 1.62
HDAC6-219ENST00000476625 DCAF1Q9Y4B6 1507 aa25.16■■□□□ 1.62
HDAC6-219ENST00000476625 CECR2Q9BXF3 1484 aa25.07■■□□□ 1.6
HDAC6-219ENST00000476625 SHROOM4Q9ULL8 1493 aa25.04■■□□□ 1.6
HDAC6-219ENST00000476625 EIF4G1Q04637 1599 aaKnown RBP25.03■■□□□ 1.6
HDAC6-219ENST00000476625 DNAJC5Q9H3Z4 198 aa24.21■■□□□ 1.47
HDAC6-219ENST00000476625 NCAPD3P42695 1498 aa24.03■■□□□ 1.44
HDAC6-219ENST00000476625 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
HDAC6-219ENST00000476625 ERCC6Q03468 1493 aa24■■□□□ 1.43
HDAC6-219ENST00000476625 SMARCA4P51532 1647 aa23.99■■□□□ 1.43
HDAC6-219ENST00000476625 CUX2O14529 1486 aa23.96■■□□□ 1.43
HDAC6-219ENST00000476625 NESP48681 1621 aa23.95■■□□□ 1.42
HDAC6-219ENST00000476625 HMGXB3Q12766 1538 aa23.89■■□□□ 1.41
HDAC6-219ENST00000476625 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
HDAC6-219ENST00000476625 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
HDAC6-219ENST00000476625 BAZ1AQ9NRL2 1556 aaPredicted RBP23.74■■□□□ 1.39
HDAC6-219ENST00000476625 THOC2Q8NI27 1593 aaKnown RBP23.73■■□□□ 1.39
HDAC6-219ENST00000476625 KIF21AQ7Z4S6 1674 aa23.68■■□□□ 1.38
HDAC6-219ENST00000476625 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
HDAC6-219ENST00000476625 PEG3Q9GZU2 1588 aa23.66■■□□□ 1.38
HDAC6-219ENST00000476625 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.37
HDAC6-219ENST00000476625 WIZO95785 1651 aa23.45■■□□□ 1.34
HDAC6-219ENST00000476625 PDS5BQ9NTI5 1447 aa23.36■■□□□ 1.33
HDAC6-219ENST00000476625 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
HDAC6-219ENST00000476625 MRC2Q9UBG0 1479 aa23.28■■□□□ 1.32
HDAC6-219ENST00000476625 WDR62O43379 1518 aa23.26■■□□□ 1.31
HDAC6-219ENST00000476625 TRIM41Q8WV44 630 aa23.2■■□□□ 1.3
HDAC6-219ENST00000476625 CEP164Q9UPV0 1460 aa23.14■■□□□ 1.29
HDAC6-219ENST00000476625 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
HDAC6-219ENST00000476625 RSF1Q96T23 1441 aaPredicted RBP23.01■■□□□ 1.27
HDAC6-219ENST00000476625 CFTRP13569 1480 aa23.01■■□□□ 1.27
HDAC6-219ENST00000476625 TOP2AP11388 1531 aaKnown RBP23.01■■□□□ 1.27
HDAC6-219ENST00000476625 URB2Q14146 1524 aaKnown RBP23■■□□□ 1.27
HDAC6-219ENST00000476625 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
HDAC6-219ENST00000476625 ZNF608Q9ULD9 1512 aaPredicted RBP22.78■■□□□ 1.24
HDAC6-219ENST00000476625 OSCARQ8IYS5 282 aa22.78■■□□□ 1.24
HDAC6-219ENST00000476625 CCDC88BA6NC98 1476 aa22.76■■□□□ 1.23
HDAC6-219ENST00000476625 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
HDAC6-219ENST00000476625 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
HDAC6-219ENST00000476625 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
HDAC6-219ENST00000476625 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
HDAC6-219ENST00000476625 EIF4G3O43432 1585 aaKnown RBP22.66■■□□□ 1.22
HDAC6-219ENST00000476625 IFT140Q96RY7 1462 aa22.63■■□□□ 1.21
HDAC6-219ENST00000476625 CHD1O14646 1710 aa22.6■■□□□ 1.21
HDAC6-219ENST00000476625 ARHGEF11O15085 1522 aa22.58■■□□□ 1.21
HDAC6-219ENST00000476625 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
HDAC6-219ENST00000476625 TARBP1Q13395 1621 aaKnown RBP22.53■■□□□ 1.2
HDAC6-219ENST00000476625 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.192e-14■■■■■ 33.6
HDAC6-219ENST00000476625 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
HDAC6-219ENST00000476625 POLA1P09884 1462 aaPredicted RBP22.42■■□□□ 1.18
HDAC6-219ENST00000476625 RAD54L2Q9Y4B4 1467 aa22.41■■□□□ 1.18
HDAC6-219ENST00000476625 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
HDAC6-219ENST00000476625 ARAP1Q96P48 1450 aa22.37■■□□□ 1.17
HDAC6-219ENST00000476625 FBLN2P98095 1184 aa22.34■■□□□ 1.17
HDAC6-219ENST00000476625 TDRD9Q8NDG6 1382 aaKnown RBP22.3■■□□□ 1.16
HDAC6-219ENST00000476625 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
HDAC6-219ENST00000476625 SNAPC4Q5SXM2 1469 aa22.27■■□□□ 1.16
HDAC6-219ENST00000476625 SOGA1O94964 1423 aa22.25■■□□□ 1.15
HDAC6-219ENST00000476625 CUX1P39880 1505 aa22.25■■□□□ 1.15
HDAC6-219ENST00000476625 CLASP1Q7Z460 1538 aa22.21■■□□□ 1.15
HDAC6-219ENST00000476625 WDR97A6NE52 1622 aa22.21■■□□□ 1.15
HDAC6-219ENST00000476625 TRHP20396 242 aaPredicted RBP22.2■■□□□ 1.14
HDAC6-219ENST00000476625 PBRM1Q86U86 1689 aa22.17■■□□□ 1.14
HDAC6-219ENST00000476625 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
HDAC6-219ENST00000476625 GRIN2BQ13224 1484 aa22.08■■□□□ 1.12
HDAC6-219ENST00000476625 MAGI1Q96QZ7 1491 aaPredicted RBP22.08■■□□□ 1.12
HDAC6-219ENST00000476625 CHMP7Q8WUX9 453 aaPredicted RBP22.06■■□□□ 1.12
HDAC6-219ENST00000476625 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
HDAC6-219ENST00000476625 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
HDAC6-219ENST00000476625 GAPVD1Q14C86 1478 aa22■■□□□ 1.11
HDAC6-219ENST00000476625 ERCC6L2Q5T890 1561 aa21.99■■□□□ 1.11
HDAC6-219ENST00000476625 ABCA10Q8WWZ4 1543 aa21.93■■□□□ 1.1
HDAC6-219ENST00000476625 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
HDAC6-219ENST00000476625 CEP170Q5SW79 1584 aa21.87■■□□□ 1.09
HDAC6-219ENST00000476625 SUPT5HO00267 1087 aaKnown RBP21.87■■□□□ 1.09
HDAC6-219ENST00000476625 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
HDAC6-219ENST00000476625 BIVM-ERCC5R4GMW8 1640 aa21.83■■□□□ 1.08
HDAC6-219ENST00000476625 TOP2BQ02880 1626 aa21.78■■□□□ 1.08
HDAC6-219ENST00000476625 SHROOM2Q13796 1616 aa21.76■■□□□ 1.07
HDAC6-219ENST00000476625 NUP160Q12769 1436 aa21.74■■□□□ 1.07
HDAC6-219ENST00000476625 WRNQ14191 1432 aaPredicted RBP eCLIP21.73■■□□□ 1.07
HDAC6-219ENST00000476625 KIF13AQ9H1H9 1805 aa21.69■■□□□ 1.06
HDAC6-219ENST00000476625 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
HDAC6-219ENST00000476625 AEBP2Q6ZN18 517 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-219ENST00000476625 ERICH3Q5RHP9 1530 aa21.63■■□□□ 1.05
HDAC6-219ENST00000476625 RUSC2Q8N2Y8 1516 aa21.59■■□□□ 1.05
HDAC6-219ENST00000476625 PRG4Q92954 1404 aaPredicted RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms