RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 KDM5DQ9BY66 1539 aa18.23■□□□□ 0.51
SQSTM1-203ENST00000422245 KIF3BO15066 747 aa18.23■□□□□ 0.51
SQSTM1-203ENST00000422245 KANK4Q5T7N3 995 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-203ENST00000422245 PLA2R1Q13018 1463 aa18.21■□□□□ 0.51
SQSTM1-203ENST00000422245 PZPP20742 1482 aa18.19■□□□□ 0.5
SQSTM1-203ENST00000422245 APLP2Q06481 763 aa18.18■□□□□ 0.5
SQSTM1-203ENST00000422245 RNF17Q9BXT8 1623 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-203ENST00000422245 EIF2AK4Q9P2K8 1649 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-203ENST00000422245 A2ML1A8K2U0 1454 aa18.17■□□□□ 0.5
SQSTM1-203ENST00000422245 TCOF1Q13428 1488 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-203ENST00000422245 PKD2Q13563 968 aa18.16■□□□□ 0.5
SQSTM1-203ENST00000422245 WASHC2CQ9Y4E1 1318 aa18.16■□□□□ 0.5
SQSTM1-203ENST00000422245 LTBP4Q8N2S1 1624 aa18.16■□□□□ 0.5
SQSTM1-203ENST00000422245 TNRQ92752 1358 aa18.16■□□□□ 0.5
SQSTM1-203ENST00000422245 ZC3H13Q5T200 1668 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-203ENST00000422245 IQSEC2Q5JU85 1478 aa18.14■□□□□ 0.5
SQSTM1-203ENST00000422245 DNMT1P26358 1616 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-203ENST00000422245 SHANK2Q9UPX8 1470 aa18.14■□□□□ 0.49
SQSTM1-203ENST00000422245 CROCC2H7BZ55 1655 aa18.13■□□□□ 0.49
SQSTM1-203ENST00000422245 NCKAP5LQ9HCH0 1330 aa18.12■□□□□ 0.49
SQSTM1-203ENST00000422245 PTPN23Q9H3S7 1636 aa18.11■□□□□ 0.49
SQSTM1-203ENST00000422245 POLR1AO95602 1720 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-203ENST00000422245 ABCC3O15438 1527 aa18.1■□□□□ 0.49
SQSTM1-203ENST00000422245 DUOX2Q9NRD8 1548 aa18.1■□□□□ 0.49
SQSTM1-203ENST00000422245 NLRP1Q9C000 1473 aa18.1■□□□□ 0.49
SQSTM1-203ENST00000422245 FBXO31Q5XUX0 539 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-203ENST00000422245 FGD6Q6ZV73 1430 aa18.09■□□□□ 0.49
SQSTM1-203ENST00000422245 MROH1Q8NDA8 1641 aa18.09■□□□□ 0.49
SQSTM1-203ENST00000422245 ABCC5O15440 1437 aa18.08■□□□□ 0.49
SQSTM1-203ENST00000422245 KIF15Q9NS87 1388 aa18.08■□□□□ 0.49
SQSTM1-203ENST00000422245 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
SQSTM1-203ENST00000422245 SPATA31D1Q6ZQQ2 1576 aa18.06■□□□□ 0.48
SQSTM1-203ENST00000422245 DAPK1P53355 1430 aa18.06■□□□□ 0.48
SQSTM1-203ENST00000422245 ZNF335Q9H4Z2 1342 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-203ENST00000422245 UGGT1Q9NYU2 1555 aa18.04■□□□□ 0.48
SQSTM1-203ENST00000422245 PRDM15P57071 1507 aaPredicted RBP18.04■□□□□ 0.48
SQSTM1-203ENST00000422245 CEP152O94986 1710 aa18.04■□□□□ 0.48
SQSTM1-203ENST00000422245 NEURL4Q96JN8 1562 aa18.04■□□□□ 0.48
SQSTM1-203ENST00000422245 ERVK-7P63135 1459 aa18.03■□□□□ 0.48
SQSTM1-203ENST00000422245 THEMISQ8N1K5 641 aaPredicted RBP18.02■□□□□ 0.48
SQSTM1-203ENST00000422245 DEPDC5O75140 1603 aa18.01■□□□□ 0.47
SQSTM1-203ENST00000422245 ANKRD30AQ9BXX3 1397 aa18■□□□□ 0.47
SQSTM1-203ENST00000422245 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18■□□□□ 0.471e-6■□□□□ 11.1
SQSTM1-203ENST00000422245 ARHGAP31Q2M1Z3 1444 aa17.99■□□□□ 0.47
SQSTM1-203ENST00000422245 ANKLE2Q86XL3 938 aa17.99■□□□□ 0.47
SQSTM1-203ENST00000422245 RRP7BPQ9NSQ0 103 aa17.99■□□□□ 0.47
SQSTM1-203ENST00000422245 MED14O60244 1454 aa17.97■□□□□ 0.47
SQSTM1-203ENST00000422245 CPS1P31327 1500 aa17.97■□□□□ 0.47
SQSTM1-203ENST00000422245 KANK1Q14678 1352 aa17.96■□□□□ 0.47
SQSTM1-203ENST00000422245 NPHP4O75161 1426 aaPredicted RBP17.96■□□□□ 0.47
SQSTM1-203ENST00000422245 ADGRL2O95490 1459 aa17.95■□□□□ 0.46
SQSTM1-203ENST00000422245 IQGAP1P46940 1657 aa17.94■□□□□ 0.46
SQSTM1-203ENST00000422245 UBR1Q8IWV7 1749 aa17.94■□□□□ 0.46
SQSTM1-203ENST00000422245 CFAP65Q6ZU64 1925 aaKnown RBP17.93■□□□□ 0.46
SQSTM1-203ENST00000422245 LMTK2Q8IWU2 1503 aa17.93■□□□□ 0.46
SQSTM1-203ENST00000422245 CHIC2Q9UKJ5 165 aa17.92■□□□□ 0.46
SQSTM1-203ENST00000422245 VWDEQ8N2E2 1590 aa17.91■□□□□ 0.46
SQSTM1-203ENST00000422245 UBAP1LF5GYI3 381 aa17.91■□□□□ 0.46
SQSTM1-203ENST00000422245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
SQSTM1-203ENST00000422245 FAM50AQ14320 339 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-203ENST00000422245 SCAF11Q99590 1463 aaKnown RBP17.88■□□□□ 0.45
SQSTM1-203ENST00000422245 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
SQSTM1-203ENST00000422245 SLIT1O75093 1534 aa17.88■□□□□ 0.45
SQSTM1-203ENST00000422245 KDM5AP29375 1690 aaKnown RBP17.87■□□□□ 0.45
SQSTM1-203ENST00000422245 EFCAB6Q5THR3 1501 aa17.87■□□□□ 0.45
SQSTM1-203ENST00000422245 ANKRD50Q9ULJ7 1429 aa17.86■□□□□ 0.45
SQSTM1-203ENST00000422245 PIK3C2BO00750 1634 aa17.86■□□□□ 0.45
SQSTM1-203ENST00000422245 SYNMO15061 1565 aa17.85■□□□□ 0.45
SQSTM1-203ENST00000422245 DISP3Q9P2K9 1392 aa17.83■□□□□ 0.45
SQSTM1-203ENST00000422245 NOS1P29475 1434 aa17.82■□□□□ 0.44
SQSTM1-203ENST00000422245 TMEM2Q9UHN6 1383 aa17.82■□□□□ 0.44
SQSTM1-203ENST00000422245 RPRD2Q5VT52 1461 aaKnown RBP17.82■□□□□ 0.44
SQSTM1-203ENST00000422245 TOM1O60784 492 aa17.81■□□□□ 0.44
SQSTM1-203ENST00000422245 EID1Q9Y6B2 187 aa17.81■□□□□ 0.44
SQSTM1-203ENST00000422245 STRCP1A6NGW2 1772 aa17.81■□□□□ 0.44
SQSTM1-203ENST00000422245 TXNDC2Q86VQ3 553 aa17.8■□□□□ 0.44
SQSTM1-203ENST00000422245 STAG3Q9UJ98 1225 aa17.8■□□□□ 0.44
SQSTM1-203ENST00000422245 ROCK1Q13464 1354 aa17.79■□□□□ 0.44
SQSTM1-203ENST00000422245 LTKP29376 864 aa17.79■□□□□ 0.44
SQSTM1-203ENST00000422245 TET3O43151 1660 aa17.79■□□□□ 0.44
SQSTM1-203ENST00000422245 UNC13BO14795 1591 aa17.79■□□□□ 0.44
SQSTM1-203ENST00000422245 ADGRB3O60242 1522 aa17.78■□□□□ 0.44
SQSTM1-203ENST00000422245 LRRC7Q96NW7 1537 aa17.77■□□□□ 0.44
SQSTM1-203ENST00000422245 IDI1Q13907 227 aa17.77■□□□□ 0.44
SQSTM1-203ENST00000422245 GCC2Q8IWJ2 1684 aa17.77■□□□□ 0.43
SQSTM1-203ENST00000422245 SCAF1Q9H7N4 1312 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-203ENST00000422245 SLC52A1Q9NWF4 448 aa17.76■□□□□ 0.43
SQSTM1-203ENST00000422245 ALKQ9UM73 1620 aa17.74■□□□□ 0.43
SQSTM1-203ENST00000422245 PIP4K2BP78356 416 aa17.74■□□□□ 0.43
SQSTM1-203ENST00000422245 IQGAP3Q86VI3 1631 aa17.71■□□□□ 0.43
SQSTM1-203ENST00000422245 HSPA1LP34931 641 aa17.7■□□□□ 0.42
SQSTM1-203ENST00000422245 E9PCH4 1651 aa17.68■□□□□ 0.42
SQSTM1-203ENST00000422245 XIRP1Q702N8 1843 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-203ENST00000422245 ZFYVE9O95405 1425 aa17.67■□□□□ 0.42
SQSTM1-203ENST00000422245 TMEM131LA2VDJ0 1609 aa17.67■□□□□ 0.42
SQSTM1-203ENST00000422245 MYO5BQ9ULV0 1848 aa17.67■□□□□ 0.42
SQSTM1-203ENST00000422245 ILDR2Q71H61 639 aa17.66■□□□□ 0.42
SQSTM1-203ENST00000422245 NWD1Q149M9 1564 aa17.66■□□□□ 0.42
SQSTM1-203ENST00000422245 KCNA6P17658 529 aa17.65■□□□□ 0.42
SQSTM1-203ENST00000422245 ITGAEP38570 1179 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms