RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 NISCHQ9Y2I1 1504 aa28.83■■■□□ 2.21
SQSTM1-203ENST00000422245 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
SQSTM1-203ENST00000422245 ABCC9O60706 1549 aa25.67■■□□□ 1.7
SQSTM1-203ENST00000422245 RB1CC1Q8TDY2 1594 aa24.56■■□□□ 1.52
SQSTM1-203ENST00000422245 NACADO15069 1562 aa24.42■■□□□ 1.5
SQSTM1-203ENST00000422245 DCAF8L2P0C7V8 631 aa24.18■■□□□ 1.46
SQSTM1-203ENST00000422245 MYO15BQ96JP2 1530 aa24.15■■□□□ 1.46
SQSTM1-203ENST00000422245 UNC13AQ9UPW8 1703 aa23.99■■□□□ 1.43
SQSTM1-203ENST00000422245 ZCCHC6Q5VYS8 1495 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-203ENST00000422245 DNAJC5BQ9UF47 199 aa23.9■■□□□ 1.42
SQSTM1-203ENST00000422245 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.41
SQSTM1-203ENST00000422245 DCAF1Q9Y4B6 1507 aa23.88■■□□□ 1.41
SQSTM1-203ENST00000422245 BICRAQ9NZM4 1560 aa23.8■■□□□ 1.4
SQSTM1-203ENST00000422245 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
SQSTM1-203ENST00000422245 SCRIBQ14160 1630 aa23.52■■□□□ 1.36
SQSTM1-203ENST00000422245 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
SQSTM1-203ENST00000422245 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
SQSTM1-203ENST00000422245 CECR2Q9BXF3 1484 aa23.14■■□□□ 1.29
SQSTM1-203ENST00000422245 NCAPD3P42695 1498 aa22.52■■□□□ 1.2
SQSTM1-203ENST00000422245 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
SQSTM1-203ENST00000422245 ATAD2BQ9ULI0 1458 aa22.46■■□□□ 1.19
SQSTM1-203ENST00000422245 SMARCA2P51531 1590 aa22.44■■□□□ 1.18
SQSTM1-203ENST00000422245 HMGXB3Q12766 1538 aa22.41■■□□□ 1.18
SQSTM1-203ENST00000422245 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
SQSTM1-203ENST00000422245 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
SQSTM1-203ENST00000422245 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-203ENST00000422245 ERCC6Q03468 1493 aa22.19■■□□□ 1.14
SQSTM1-203ENST00000422245 MROH2BQ7Z745 1585 aa22.18■■□□□ 1.14
SQSTM1-203ENST00000422245 CUX2O14529 1486 aa22.15■■□□□ 1.14
SQSTM1-203ENST00000422245 NESP48681 1621 aa22.07■■□□□ 1.12
SQSTM1-203ENST00000422245 LAMC3Q9Y6N6 1575 aa22.03■■□□□ 1.12
SQSTM1-203ENST00000422245 DNAJC5Q9H3Z4 198 aa21.94■■□□□ 1.1
SQSTM1-203ENST00000422245 WIZO95785 1651 aa21.93■■□□□ 1.1
SQSTM1-203ENST00000422245 THOC2Q8NI27 1593 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-203ENST00000422245 PDS5BQ9NTI5 1447 aa21.87■■□□□ 1.09
SQSTM1-203ENST00000422245 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
SQSTM1-203ENST00000422245 CADPSQ9ULU8 1353 aa21.83■■□□□ 1.08
SQSTM1-203ENST00000422245 RSF1Q96T23 1441 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-203ENST00000422245 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.07
SQSTM1-203ENST00000422245 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
SQSTM1-203ENST00000422245 WDR62O43379 1518 aa21.63■■□□□ 1.05
SQSTM1-203ENST00000422245 CFTRP13569 1480 aa21.62■■□□□ 1.05
SQSTM1-203ENST00000422245 CEP164Q9UPV0 1460 aa21.61■■□□□ 1.05
SQSTM1-203ENST00000422245 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.05
SQSTM1-203ENST00000422245 PRDM2Q13029 1718 aa21.48■■□□□ 1.03
SQSTM1-203ENST00000422245 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
SQSTM1-203ENST00000422245 URB2Q14146 1524 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-203ENST00000422245 ABCC8Q09428 1581 aa21.19■□□□□ 0.98
SQSTM1-203ENST00000422245 TOPBP1Q92547 1522 aa21.19■□□□□ 0.98
SQSTM1-203ENST00000422245 IFT140Q96RY7 1462 aa21.18■□□□□ 0.98
SQSTM1-203ENST00000422245 DNMBPQ6XZF7 1577 aa21.14■□□□□ 0.98
SQSTM1-203ENST00000422245 OSCARQ8IYS5 282 aa21.09■□□□□ 0.97
SQSTM1-203ENST00000422245 ZNF608Q9ULD9 1512 aaPredicted RBP21.09■□□□□ 0.97
SQSTM1-203ENST00000422245 EIF4G3O43432 1585 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-203ENST00000422245 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
SQSTM1-203ENST00000422245 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
SQSTM1-203ENST00000422245 POLA1P09884 1462 aaPredicted RBP20.98■□□□□ 0.95
SQSTM1-203ENST00000422245 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.946e-8■■■■■ 28.9
SQSTM1-203ENST00000422245 WDR97A6NE52 1622 aa20.87■□□□□ 0.93
SQSTM1-203ENST00000422245 SOGA1O94964 1423 aa20.87■□□□□ 0.93
SQSTM1-203ENST00000422245 FGD5Q6ZNL6 1462 aa20.86■□□□□ 0.93
SQSTM1-203ENST00000422245 RAD54L2Q9Y4B4 1467 aa20.86■□□□□ 0.93
SQSTM1-203ENST00000422245 SUPT5HO00267 1087 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-203ENST00000422245 CHD1O14646 1710 aa20.84■□□□□ 0.93
SQSTM1-203ENST00000422245 CUX1P39880 1505 aa20.84■□□□□ 0.93
SQSTM1-203ENST00000422245 RIMBP3CA6NJZ7 1639 aa20.84■□□□□ 0.93
SQSTM1-203ENST00000422245 RIMBP3BA6NNM3 1639 aa20.84■□□□□ 0.93
SQSTM1-203ENST00000422245 RIMBP3Q9UFD9 1639 aa20.84■□□□□ 0.93
SQSTM1-203ENST00000422245 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-203ENST00000422245 ARHGEF11O15085 1522 aa20.79■□□□□ 0.92
SQSTM1-203ENST00000422245 SNAPC4Q5SXM2 1469 aa20.73■□□□□ 0.91
SQSTM1-203ENST00000422245 FBLN2P98095 1184 aa20.72■□□□□ 0.91
SQSTM1-203ENST00000422245 MAGI1Q96QZ7 1491 aaPredicted RBP20.71■□□□□ 0.91
SQSTM1-203ENST00000422245 GRIN2BQ13224 1484 aa20.7■□□□□ 0.9
SQSTM1-203ENST00000422245 PBRM1Q86U86 1689 aa20.65■□□□□ 0.9
SQSTM1-203ENST00000422245 ABCA10Q8WWZ4 1543 aa20.65■□□□□ 0.9
SQSTM1-203ENST00000422245 SYNJ1O43426 1573 aa20.63■□□□□ 0.89
SQSTM1-203ENST00000422245 SYNJ2O15056 1496 aa20.62■□□□□ 0.89
SQSTM1-203ENST00000422245 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
SQSTM1-203ENST00000422245 CHMP7Q8WUX9 453 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-203ENST00000422245 ABCA5Q8WWZ7 1642 aa20.62■□□□□ 0.89
SQSTM1-203ENST00000422245 CLASP1Q7Z460 1538 aa20.62■□□□□ 0.89
SQSTM1-203ENST00000422245 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
SQSTM1-203ENST00000422245 WRNQ14191 1432 aaPredicted RBP eCLIP20.59■□□□□ 0.894e-10■■□□□ 11.8
SQSTM1-203ENST00000422245 ARAP1Q96P48 1450 aa20.58■□□□□ 0.89
SQSTM1-203ENST00000422245 TOP2BQ02880 1626 aa20.58■□□□□ 0.89
SQSTM1-203ENST00000422245 CYB5RLQ6IPT4 315 aa20.56■□□□□ 0.88
SQSTM1-203ENST00000422245 ADAMTS12P58397 1594 aa20.46■□□□□ 0.87
SQSTM1-203ENST00000422245 GRIN2AQ12879 1464 aa20.43■□□□□ 0.86
SQSTM1-203ENST00000422245 ERICH3Q5RHP9 1530 aa20.41■□□□□ 0.86
SQSTM1-203ENST00000422245 FHAD1B1AJZ9 1412 aa20.4■□□□□ 0.86
SQSTM1-203ENST00000422245 NUP160Q12769 1436 aa20.37■□□□□ 0.85
SQSTM1-203ENST00000422245 CEP170Q5SW79 1584 aa20.34■□□□□ 0.85
SQSTM1-203ENST00000422245 TRHP20396 242 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-203ENST00000422245 SHROOM2Q13796 1616 aa20.29■□□□□ 0.84
SQSTM1-203ENST00000422245 ERCC6L2Q5T890 1561 aa20.24■□□□□ 0.83
SQSTM1-203ENST00000422245 KIF27Q86VH2 1401 aa20.19■□□□□ 0.82
SQSTM1-203ENST00000422245 RUSC2Q8N2Y8 1516 aa20.17■□□□□ 0.82
SQSTM1-203ENST00000422245 CUL7Q14999 1698 aa20.16■□□□□ 0.82
SQSTM1-203ENST00000422245 PRG4Q92954 1404 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms