RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 DNMT1P26358 1616 aaKnown RBP19.6■□□□□ 0.73
LIMS2-210ENST00000413578 PZPP20742 1482 aa19.59■□□□□ 0.73
LIMS2-210ENST00000413578 CAMSAP2Q08AD1 1489 aa19.59■□□□□ 0.73
LIMS2-210ENST00000413578 KDM5DQ9BY66 1539 aa19.57■□□□□ 0.72
LIMS2-210ENST00000413578 KIF3BO15066 747 aa19.57■□□□□ 0.72
LIMS2-210ENST00000413578 RSPH4AQ5TD94 716 aa19.57■□□□□ 0.72
LIMS2-210ENST00000413578 FBXO31Q5XUX0 539 aaPredicted RBP19.57■□□□□ 0.72
LIMS2-210ENST00000413578 TNRQ92752 1358 aa19.57■□□□□ 0.72
LIMS2-210ENST00000413578 UBAP1LF5GYI3 381 aa19.56■□□□□ 0.72
LIMS2-210ENST00000413578 NEURL4Q96JN8 1562 aa19.55■□□□□ 0.72
LIMS2-210ENST00000413578 ARHGEF5Q12774 1597 aa19.53■□□□□ 0.72
LIMS2-210ENST00000413578 MIA2Q96PC5 1412 aa19.51■□□□□ 0.71
LIMS2-210ENST00000413578 WASHC2CQ9Y4E1 1318 aa19.51■□□□□ 0.71
LIMS2-210ENST00000413578 NLRP1Q9C000 1473 aa19.49■□□□□ 0.71
LIMS2-210ENST00000413578 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.48■□□□□ 0.71
LIMS2-210ENST00000413578 CPS1P31327 1500 aa19.48■□□□□ 0.71
LIMS2-210ENST00000413578 MED14O60244 1454 aa19.48■□□□□ 0.71
LIMS2-210ENST00000413578 SHANK2Q9UPX8 1470 aa19.48■□□□□ 0.71
LIMS2-210ENST00000413578 LRRC9Q6ZRR7 1453 aa19.47■□□□□ 0.71
LIMS2-210ENST00000413578 POLR1AO95602 1720 aaPredicted RBP19.45■□□□□ 0.7
LIMS2-210ENST00000413578 VWDEQ8N2E2 1590 aa19.45■□□□□ 0.7
LIMS2-210ENST00000413578 VPS8Q8N3P4 1428 aa19.45■□□□□ 0.7
LIMS2-210ENST00000413578 TSPY4P0CV99 314 aa19.45■□□□□ 0.7
LIMS2-210ENST00000413578 TSPY10P0CW01 314 aa19.45■□□□□ 0.7
LIMS2-210ENST00000413578 ANKLE2Q86XL3 938 aa19.45■□□□□ 0.7
LIMS2-210ENST00000413578 THEMISQ8N1K5 641 aaPredicted RBP19.45■□□□□ 0.7
LIMS2-210ENST00000413578 UGGT1Q9NYU2 1555 aa19.44■□□□□ 0.7
LIMS2-210ENST00000413578 MAST1Q9Y2H9 1570 aa19.44■□□□□ 0.7
LIMS2-210ENST00000413578 RNF17Q9BXT8 1623 aaKnown RBP19.44■□□□□ 0.7
LIMS2-210ENST00000413578 ABCC3O15438 1527 aa19.43■□□□□ 0.7
LIMS2-210ENST00000413578 DEPDC5O75140 1603 aa19.43■□□□□ 0.7
LIMS2-210ENST00000413578 NPHP4O75161 1426 aaPredicted RBP19.42■□□□□ 0.7
LIMS2-210ENST00000413578 MROH1Q8NDA8 1641 aa19.4■□□□□ 0.7
LIMS2-210ENST00000413578 HSPA1LP34931 641 aa19.4■□□□□ 0.7
LIMS2-210ENST00000413578 MAP3K1Q13233 1512 aa19.4■□□□□ 0.7
LIMS2-210ENST00000413578 ALKQ9UM73 1620 aa19.4■□□□□ 0.7
LIMS2-210ENST00000413578 KANK4Q5T7N3 995 aaPredicted RBP19.39■□□□□ 0.69
LIMS2-210ENST00000413578 ERVK-7P63135 1459 aa19.39■□□□□ 0.69
LIMS2-210ENST00000413578 TOM1O60784 492 aa19.38■□□□□ 0.69
LIMS2-210ENST00000413578 ZC3H13Q5T200 1668 aaKnown RBP19.38■□□□□ 0.69
LIMS2-210ENST00000413578 EIF2AK4Q9P2K8 1649 aaKnown RBP19.38■□□□□ 0.69
LIMS2-210ENST00000413578 MYOM3Q5VTT5 1437 aa19.37■□□□□ 0.69
LIMS2-210ENST00000413578 PIP4K2BP78356 416 aa19.36■□□□□ 0.69
LIMS2-210ENST00000413578 IQGAP1P46940 1657 aa19.33■□□□□ 0.68
LIMS2-210ENST00000413578 MED1Q15648 1581 aaPredicted RBP19.32■□□□□ 0.68
LIMS2-210ENST00000413578 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
LIMS2-210ENST00000413578 LRRC7Q96NW7 1537 aa19.32■□□□□ 0.68
LIMS2-210ENST00000413578 DUOX2Q9NRD8 1548 aa19.32■□□□□ 0.68
LIMS2-210ENST00000413578 LOC105371045A0A1W2PR82 267 aa19.32■□□□□ 0.68
LIMS2-210ENST00000413578 ARHGAP31Q2M1Z3 1444 aa19.31■□□□□ 0.68
LIMS2-210ENST00000413578 PRDM15P57071 1507 aaPredicted RBP19.3■□□□□ 0.68
LIMS2-210ENST00000413578 ARHGAP23Q9P227 1491 aa19.29■□□□□ 0.68
LIMS2-210ENST00000413578 STRCP1A6NGW2 1772 aa19.29■□□□□ 0.68
LIMS2-210ENST00000413578 ABCC5O15440 1437 aa19.28■□□□□ 0.68
LIMS2-210ENST00000413578 SLIT1O75093 1534 aa19.28■□□□□ 0.68
LIMS2-210ENST00000413578 KIF15Q9NS87 1388 aa19.28■□□□□ 0.68
LIMS2-210ENST00000413578 ERBINQ96RT1 1412 aa19.27■□□□□ 0.68
LIMS2-210ENST00000413578 UBR1Q8IWV7 1749 aa19.27■□□□□ 0.68
LIMS2-210ENST00000413578 SCAF11Q99590 1463 aaKnown RBP19.27■□□□□ 0.67
LIMS2-210ENST00000413578 SYNMO15061 1565 aa19.27■□□□□ 0.67
LIMS2-210ENST00000413578 LTKP29376 864 aa19.26■□□□□ 0.67
LIMS2-210ENST00000413578 CEP152O94986 1710 aa19.25■□□□□ 0.67
LIMS2-210ENST00000413578 DAPK1P53355 1430 aa19.21■□□□□ 0.67
LIMS2-210ENST00000413578 CROCC2H7BZ55 1655 aa19.2■□□□□ 0.66
LIMS2-210ENST00000413578 TXNDC2Q86VQ3 553 aa19.2■□□□□ 0.66
LIMS2-210ENST00000413578 RRP7BPQ9NSQ0 103 aa19.2■□□□□ 0.66
LIMS2-210ENST00000413578 LMTK2Q8IWU2 1503 aa19.2■□□□□ 0.66
LIMS2-210ENST00000413578 TMEM2Q9UHN6 1383 aa19.19■□□□□ 0.66
LIMS2-210ENST00000413578 PTPN23Q9H3S7 1636 aa19.19■□□□□ 0.66
LIMS2-210ENST00000413578 FGD6Q6ZV73 1430 aa19.17■□□□□ 0.66
LIMS2-210ENST00000413578 PIK3C2BO00750 1634 aa19.15■□□□□ 0.66
LIMS2-210ENST00000413578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.14■□□□□ 0.65
LIMS2-210ENST00000413578 EID1Q9Y6B2 187 aa19.14■□□□□ 0.65
LIMS2-210ENST00000413578 IDI1Q13907 227 aa19.13■□□□□ 0.65
LIMS2-210ENST00000413578 KANK1Q14678 1352 aa19.13■□□□□ 0.65
LIMS2-210ENST00000413578 NOS1P29475 1434 aa19.13■□□□□ 0.65
LIMS2-210ENST00000413578 CFAP65Q6ZU64 1925 aaKnown RBP19.12■□□□□ 0.65
LIMS2-210ENST00000413578 KDM5AP29375 1690 aaKnown RBP19.12■□□□□ 0.65
LIMS2-210ENST00000413578 EFCAB6Q5THR3 1501 aa19.12■□□□□ 0.65
LIMS2-210ENST00000413578 ANKRD30AQ9BXX3 1397 aa19.12■□□□□ 0.65
LIMS2-210ENST00000413578 PHF23Q9BUL5 403 aaPredicted RBP19.12■□□□□ 0.65
LIMS2-210ENST00000413578 XIRP1Q702N8 1843 aaKnown RBP19.11■□□□□ 0.65
LIMS2-210ENST00000413578 TET3O43151 1660 aa19.11■□□□□ 0.65
LIMS2-210ENST00000413578 FAM135BQ49AJ0 1406 aa19.1■□□□□ 0.65
LIMS2-210ENST00000413578 ADGRL2O95490 1459 aa19.09■□□□□ 0.65
LIMS2-210ENST00000413578 TMEM94Q12767 1356 aa19.08■□□□□ 0.65
LIMS2-210ENST00000413578 KCNA6P17658 529 aa19.08■□□□□ 0.64
LIMS2-210ENST00000413578 SENP3Q9H4L4 574 aaPredicted RBP19.08■□□□□ 0.64
LIMS2-210ENST00000413578 CHIC2Q9UKJ5 165 aa19.08■□□□□ 0.64
LIMS2-210ENST00000413578 APLP2Q06481 763 aa19.07■□□□□ 0.64
LIMS2-210ENST00000413578 RGS17Q9UGC6 210 aaPredicted RBP19.07■□□□□ 0.64
LIMS2-210ENST00000413578 ADGRB3O60242 1522 aa19.06■□□□□ 0.64
LIMS2-210ENST00000413578 STAG3Q9UJ98 1225 aa19.06■□□□□ 0.64
LIMS2-210ENST00000413578 SLC52A1Q9NWF4 448 aa19.04■□□□□ 0.64
LIMS2-210ENST00000413578 NWD1Q149M9 1564 aa19.03■□□□□ 0.64
LIMS2-210ENST00000413578 SLC26A8Q96RN1 970 aa19.03■□□□□ 0.64
LIMS2-210ENST00000413578 NKTRP30414 1462 aaKnown RBP19.03■□□□□ 0.64
LIMS2-210ENST00000413578 RPRD2Q5VT52 1461 aaKnown RBP19.03■□□□□ 0.64
LIMS2-210ENST00000413578 ZFYVE9O95405 1425 aa19.01■□□□□ 0.63
LIMS2-210ENST00000413578 ANKRD50Q9ULJ7 1429 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms