RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 NISCHQ9Y2I1 1504 aa30.98■■■□□ 2.55
LIMS2-210ENST00000413578 ABCC9O60706 1549 aa27.98■■■□□ 2.07
LIMS2-210ENST00000413578 CCDC180Q9P1Z9 1646 aa27.81■■■□□ 2.04
LIMS2-210ENST00000413578 RB1CC1Q8TDY2 1594 aa26.56■■□□□ 1.84
LIMS2-210ENST00000413578 DNAJC5BQ9UF47 199 aa26.49■■□□□ 1.83
LIMS2-210ENST00000413578 NACADO15069 1562 aa26.37■■□□□ 1.81
LIMS2-210ENST00000413578 DCAF8L2P0C7V8 631 aa26.07■■□□□ 1.76
LIMS2-210ENST00000413578 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
LIMS2-210ENST00000413578 PABPN1Q86U42 306 aaKnown RBP eCLIP26.03■■□□□ 1.76
LIMS2-210ENST00000413578 UNC13AQ9UPW8 1703 aa25.89■■□□□ 1.74
LIMS2-210ENST00000413578 BICRAQ9NZM4 1560 aa25.86■■□□□ 1.73
LIMS2-210ENST00000413578 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
LIMS2-210ENST00000413578 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
LIMS2-210ENST00000413578 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
LIMS2-210ENST00000413578 SCRIBQ14160 1630 aa25.3■■□□□ 1.64
LIMS2-210ENST00000413578 CC2D2AQ9P2K1 1620 aa25.27■■□□□ 1.64
LIMS2-210ENST00000413578 CECR2Q9BXF3 1484 aa25.26■■□□□ 1.63
LIMS2-210ENST00000413578 EIF4G1Q04637 1599 aaKnown RBP25.2■■□□□ 1.62
LIMS2-210ENST00000413578 DNAJC5Q9H3Z4 198 aa24.43■■□□□ 1.5
LIMS2-210ENST00000413578 NCAPD3P42695 1498 aa24.4■■□□□ 1.5
LIMS2-210ENST00000413578 ATAD2BQ9ULI0 1458 aa24.28■■□□□ 1.48
LIMS2-210ENST00000413578 CUX2O14529 1486 aa24.24■■□□□ 1.47
LIMS2-210ENST00000413578 HMGXB3Q12766 1538 aa24.18■■□□□ 1.46
LIMS2-210ENST00000413578 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
LIMS2-210ENST00000413578 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
LIMS2-210ENST00000413578 ERCC6Q03468 1493 aa24.14■■□□□ 1.46
LIMS2-210ENST00000413578 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
LIMS2-210ENST00000413578 NESP48681 1621 aa24.02■■□□□ 1.44
LIMS2-210ENST00000413578 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
LIMS2-210ENST00000413578 BAZ1BQ9UIG0 1483 aaKnown RBP23.99■■□□□ 1.43
LIMS2-210ENST00000413578 MROH2BQ7Z745 1585 aa23.86■■□□□ 1.41
LIMS2-210ENST00000413578 THOC2Q8NI27 1593 aaKnown RBP23.82■■□□□ 1.4
LIMS2-210ENST00000413578 LAMC3Q9Y6N6 1575 aa23.81■■□□□ 1.4
LIMS2-210ENST00000413578 PDS5BQ9NTI5 1447 aa23.68■■□□□ 1.38
LIMS2-210ENST00000413578 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
LIMS2-210ENST00000413578 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
LIMS2-210ENST00000413578 MRC2Q9UBG0 1479 aa23.5■■□□□ 1.35
LIMS2-210ENST00000413578 WIZO95785 1651 aa23.5■■□□□ 1.35
LIMS2-210ENST00000413578 WDR62O43379 1518 aa23.47■■□□□ 1.35
LIMS2-210ENST00000413578 CEP164Q9UPV0 1460 aa23.35■■□□□ 1.33
LIMS2-210ENST00000413578 CFTRP13569 1480 aa23.34■■□□□ 1.33
LIMS2-210ENST00000413578 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.33
LIMS2-210ENST00000413578 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
LIMS2-210ENST00000413578 TOP2AP11388 1531 aaKnown RBP23.25■■□□□ 1.31
LIMS2-210ENST00000413578 TRIM41Q8WV44 630 aa23.17■■□□□ 1.3
LIMS2-210ENST00000413578 URB2Q14146 1524 aaKnown RBP23.17■■□□□ 1.3
LIMS2-210ENST00000413578 OSCARQ8IYS5 282 aa23.06■■□□□ 1.28
LIMS2-210ENST00000413578 CCDC88BA6NC98 1476 aa22.99■■□□□ 1.27
LIMS2-210ENST00000413578 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
LIMS2-210ENST00000413578 IFT140Q96RY7 1462 aa22.92■■□□□ 1.26
LIMS2-210ENST00000413578 ZNF608Q9ULD9 1512 aaPredicted RBP22.91■■□□□ 1.26
LIMS2-210ENST00000413578 TOPBP1Q92547 1522 aa22.87■■□□□ 1.25
LIMS2-210ENST00000413578 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
LIMS2-210ENST00000413578 RIMBP3CA6NJZ7 1639 aa22.76■■□□□ 1.23
LIMS2-210ENST00000413578 RIMBP3BA6NNM3 1639 aa22.76■■□□□ 1.23
LIMS2-210ENST00000413578 RIMBP3Q9UFD9 1639 aa22.76■■□□□ 1.23
LIMS2-210ENST00000413578 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
LIMS2-210ENST00000413578 EIF4G3O43432 1585 aaKnown RBP22.73■■□□□ 1.23
LIMS2-210ENST00000413578 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
LIMS2-210ENST00000413578 TARBP1Q13395 1621 aaKnown RBP22.68■■□□□ 1.22
LIMS2-210ENST00000413578 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.22
LIMS2-210ENST00000413578 POLA1P09884 1462 aaPredicted RBP22.65■■□□□ 1.22
LIMS2-210ENST00000413578 RAD54L2Q9Y4B4 1467 aa22.54■■□□□ 1.2
LIMS2-210ENST00000413578 CHD1O14646 1710 aa22.53■■□□□ 1.2
LIMS2-210ENST00000413578 SOGA1O94964 1423 aa22.51■■□□□ 1.19
LIMS2-210ENST00000413578 CYB5RLQ6IPT4 315 aa22.51■■□□□ 1.19
LIMS2-210ENST00000413578 ARAP1Q96P48 1450 aa22.5■■□□□ 1.19
LIMS2-210ENST00000413578 TDRD9Q8NDG6 1382 aaKnown RBP22.5■■□□□ 1.19
LIMS2-210ENST00000413578 FBLN2P98095 1184 aa22.46■■□□□ 1.19
LIMS2-210ENST00000413578 FGD5Q6ZNL6 1462 aa22.46■■□□□ 1.19
LIMS2-210ENST00000413578 WDR97A6NE52 1622 aa22.44■■□□□ 1.18
LIMS2-210ENST00000413578 SNAPC4Q5SXM2 1469 aa22.42■■□□□ 1.18
LIMS2-210ENST00000413578 CUX1P39880 1505 aa22.41■■□□□ 1.18
LIMS2-210ENST00000413578 CLASP1Q7Z460 1538 aa22.38■■□□□ 1.17
LIMS2-210ENST00000413578 MAGI1Q96QZ7 1491 aaPredicted RBP22.37■■□□□ 1.17
LIMS2-210ENST00000413578 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
LIMS2-210ENST00000413578 CHMP7Q8WUX9 453 aaPredicted RBP22.31■■□□□ 1.16
LIMS2-210ENST00000413578 SYNJ2O15056 1496 aa22.3■■□□□ 1.16
LIMS2-210ENST00000413578 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
LIMS2-210ENST00000413578 TRHP20396 242 aaPredicted RBP22.26■■□□□ 1.15
LIMS2-210ENST00000413578 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
LIMS2-210ENST00000413578 ABCA10Q8WWZ4 1543 aa22.22■■□□□ 1.15
LIMS2-210ENST00000413578 ABCA5Q8WWZ7 1642 aa22.18■■□□□ 1.14
LIMS2-210ENST00000413578 PBRM1Q86U86 1689 aa22.15■■□□□ 1.14
LIMS2-210ENST00000413578 WRNQ14191 1432 aaPredicted RBP eCLIP22.07■■□□□ 1.12
LIMS2-210ENST00000413578 GRIN2AQ12879 1464 aa22.06■■□□□ 1.12
LIMS2-210ENST00000413578 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
LIMS2-210ENST00000413578 NUP160Q12769 1436 aa22.04■■□□□ 1.12
LIMS2-210ENST00000413578 ADAMTS12P58397 1594 aa22.01■■□□□ 1.11
LIMS2-210ENST00000413578 ERCC6L2Q5T890 1561 aa22■■□□□ 1.11
LIMS2-210ENST00000413578 TOP2BQ02880 1626 aa22■■□□□ 1.11
LIMS2-210ENST00000413578 CEP170Q5SW79 1584 aa21.99■■□□□ 1.11
LIMS2-210ENST00000413578 BIVM-ERCC5R4GMW8 1640 aa21.98■■□□□ 1.11
LIMS2-210ENST00000413578 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
LIMS2-210ENST00000413578 SHROOM2Q13796 1616 aa21.92■■□□□ 1.1
LIMS2-210ENST00000413578 ERICH3Q5RHP9 1530 aa21.91■■□□□ 1.1
LIMS2-210ENST00000413578 PRG4Q92954 1404 aaPredicted RBP21.79■■□□□ 1.08
LIMS2-210ENST00000413578 JPH4Q96JJ6 628 aa21.75■■□□□ 1.07
LIMS2-210ENST00000413578 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
LIMS2-210ENST00000413578 AEBP2Q6ZN18 517 aaPredicted RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms