RNA–Protein interactions for RNA: ENST00000395453.2

SCAF11-203, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SCAF11, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-203ENST00000395453 ZNF644Q9H582 1327 aaPredicted RBP21.56■■□□□ 1.04
SCAF11-203ENST00000395453 PLXNC1O60486 1568 aa21.55■■□□□ 1.04
SCAF11-203ENST00000395453 VPS8Q8N3P4 1428 aa21.54■■□□□ 1.04
SCAF11-203ENST00000395453 MBD5Q9P267 1494 aa21.53■■□□□ 1.04
SCAF11-203ENST00000395453 TOM1O60784 492 aa21.53■■□□□ 1.04
SCAF11-203ENST00000395453 HSPA1LP34931 641 aa21.53■■□□□ 1.04
SCAF11-203ENST00000395453 INO80Q9ULG1 1556 aaPredicted RBP21.52■■□□□ 1.04
SCAF11-203ENST00000395453 NCOA2Q15596 1464 aa21.51■■□□□ 1.03
SCAF11-203ENST00000395453 PIP4K2BP78356 416 aa21.51■■□□□ 1.03
SCAF11-203ENST00000395453 A2ML1A8K2U0 1454 aa21.5■■□□□ 1.03
SCAF11-203ENST00000395453 MED1Q15648 1581 aaPredicted RBP21.48■■□□□ 1.03
SCAF11-203ENST00000395453 CPS1P31327 1500 aa21.47■■□□□ 1.03
SCAF11-203ENST00000395453 DNMT1P26358 1616 aaKnown RBP21.46■■□□□ 1.03
SCAF11-203ENST00000395453 LRRC9Q6ZRR7 1453 aa21.46■■□□□ 1.03
SCAF11-203ENST00000395453 MAP3K1Q13233 1512 aa21.46■■□□□ 1.03
SCAF11-203ENST00000395453 RTEL1-TNFRSF6BF6WH68 1400 aa21.46■■□□□ 1.03
SCAF11-203ENST00000395453 ADGBQ8N7X0 1667 aa21.44■■□□□ 1.02
SCAF11-203ENST00000395453 SHANK2Q9UPX8 1470 aa21.44■■□□□ 1.02
SCAF11-203ENST00000395453 RSPH4AQ5TD94 716 aa21.43■■□□□ 1.02
SCAF11-203ENST00000395453 TNRQ92752 1358 aa21.41■■□□□ 1.02
SCAF11-203ENST00000395453 KANK4Q5T7N3 995 aaPredicted RBP21.41■■□□□ 1.02
SCAF11-203ENST00000395453 CAMSAP2Q08AD1 1489 aa21.41■■□□□ 1.02
SCAF11-203ENST00000395453 POLR1AO95602 1720 aaPredicted RBP21.4■■□□□ 1.02
SCAF11-203ENST00000395453 ANKLE2Q86XL3 938 aa21.4■■□□□ 1.02
SCAF11-203ENST00000395453 NEURL4Q96JN8 1562 aa21.39■■□□□ 1.01
SCAF11-203ENST00000395453 DHX29Q7Z478 1369 aaKnown RBP21.39■■□□□ 1.01
SCAF11-203ENST00000395453 CCDC141Q6ZP82 1450 aa21.39■■□□□ 1.01
SCAF11-203ENST00000395453 FBXO31Q5XUX0 539 aaPredicted RBP21.38■■□□□ 1.01
SCAF11-203ENST00000395453 PPP4R3CPQ6ZMV5 832 aa21.36■■□□□ 1.01
SCAF11-203ENST00000395453 THEMISQ8N1K5 641 aaPredicted RBP21.36■■□□□ 1.01
SCAF11-203ENST00000395453 ARHGEF5Q12774 1597 aa21.36■■□□□ 1.01
SCAF11-203ENST00000395453 KIF3BO15066 747 aa21.35■■□□□ 1.01
SCAF11-203ENST00000395453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.35■■□□□ 1.01
SCAF11-203ENST00000395453 PZPP20742 1482 aa21.35■■□□□ 1.01
SCAF11-203ENST00000395453 FAM135AQ9P2D6 1515 aa21.34■■□□□ 1.01
SCAF11-203ENST00000395453 WASHC2CQ9Y4E1 1318 aa21.32■■□□□ 1
SCAF11-203ENST00000395453 VWDEQ8N2E2 1590 aa21.32■■□□□ 1
SCAF11-203ENST00000395453 KDM5DQ9BY66 1539 aa21.32■■□□□ 1
SCAF11-203ENST00000395453 NLRP1Q9C000 1473 aa21.31■■□□□ 1
SCAF11-203ENST00000395453 NPHP4O75161 1426 aaPredicted RBP21.31■■□□□ 1
SCAF11-203ENST00000395453 MIA2Q96PC5 1412 aa21.31■■□□□ 1
SCAF11-203ENST00000395453 TSPY4P0CV99 314 aa21.3■■□□□ 1
SCAF11-203ENST00000395453 TSPY10P0CW01 314 aa21.3■■□□□ 1
SCAF11-203ENST00000395453 MED14O60244 1454 aa21.3■■□□□ 1
SCAF11-203ENST00000395453 MYOM3Q5VTT5 1437 aa21.3■■□□□ 1
SCAF11-203ENST00000395453 DEPDC5O75140 1603 aa21.28■■□□□ 1
SCAF11-203ENST00000395453 UGGT1Q9NYU2 1555 aa21.28■■□□□ 1
SCAF11-203ENST00000395453 ALKQ9UM73 1620 aa21.27■■□□□ 1
SCAF11-203ENST00000395453 MAST1Q9Y2H9 1570 aa21.25■□□□□ 0.99
SCAF11-203ENST00000395453 APLP2Q06481 763 aa21.25■□□□□ 0.99
SCAF11-203ENST00000395453 IQGAP1P46940 1657 aa21.22■□□□□ 0.99
SCAF11-203ENST00000395453 LRRC7Q96NW7 1537 aa21.22■□□□□ 0.99
SCAF11-203ENST00000395453 HOXD11P31277 338 aaPredicted RBP21.2■□□□□ 0.98
SCAF11-203ENST00000395453 RNF17Q9BXT8 1623 aaKnown RBP21.19■□□□□ 0.98
SCAF11-203ENST00000395453 SYNMO15061 1565 aa21.17■□□□□ 0.98
SCAF11-203ENST00000395453 CACNB1Q02641 598 aaPredicted RBP21.16■□□□□ 0.98
SCAF11-203ENST00000395453 STRCP1A6NGW2 1772 aa21.16■□□□□ 0.98
SCAF11-203ENST00000395453 PTPN23Q9H3S7 1636 aa21.15■□□□□ 0.98
SCAF11-203ENST00000395453 ABCC5O15440 1437 aa21.14■□□□□ 0.97
SCAF11-203ENST00000395453 FGD6Q6ZV73 1430 aa21.13■□□□□ 0.97
SCAF11-203ENST00000395453 EIF2AK4Q9P2K8 1649 aaKnown RBP21.13■□□□□ 0.97
SCAF11-203ENST00000395453 RGS17Q9UGC6 210 aaPredicted RBP21.12■□□□□ 0.97
SCAF11-203ENST00000395453 DCAF8L1A6NGE4 600 aa21.11■□□□□ 0.97
SCAF11-203ENST00000395453 DUOX2Q9NRD8 1548 aa21.11■□□□□ 0.97
SCAF11-203ENST00000395453 ABCC3O15438 1527 aa21.1■□□□□ 0.97
SCAF11-203ENST00000395453 ERVK-7P63135 1459 aa21.1■□□□□ 0.97
SCAF11-203ENST00000395453 CROCC2H7BZ55 1655 aa21.1■□□□□ 0.97
SCAF11-203ENST00000395453 ZC3H13Q5T200 1668 aaKnown RBP21.09■□□□□ 0.97
SCAF11-203ENST00000395453 SCAF11Q99590 1463 aaKnown RBP21.09■□□□□ 0.97
SCAF11-203ENST00000395453 DAPK1P53355 1430 aa21.09■□□□□ 0.97
SCAF11-203ENST00000395453 CNKSR2Q8WXI2 1034 aa21.08■□□□□ 0.97
SCAF11-203ENST00000395453 MROH1Q8NDA8 1641 aa21.08■□□□□ 0.97
SCAF11-203ENST00000395453 KIF15Q9NS87 1388 aa21.07■□□□□ 0.96
SCAF11-203ENST00000395453 TXNDC2Q86VQ3 553 aa21.05■□□□□ 0.96
SCAF11-203ENST00000395453 RRP7BPQ9NSQ0 103 aa21.05■□□□□ 0.96
SCAF11-203ENST00000395453 LTKP29376 864 aa21.04■□□□□ 0.96
SCAF11-203ENST00000395453 ERBINQ96RT1 1412 aa21.03■□□□□ 0.96
SCAF11-203ENST00000395453 UBR1Q8IWV7 1749 aa21.03■□□□□ 0.96
SCAF11-203ENST00000395453 EID1Q9Y6B2 187 aa21.03■□□□□ 0.96
SCAF11-203ENST00000395453 FAM135BQ49AJ0 1406 aa21.03■□□□□ 0.96
SCAF11-203ENST00000395453 SLIT1O75093 1534 aa21.01■□□□□ 0.95
SCAF11-203ENST00000395453 ARHGAP23Q9P227 1491 aa21.01■□□□□ 0.95
SCAF11-203ENST00000395453 CFAP65Q6ZU64 1925 aaKnown RBP20.99■□□□□ 0.95
SCAF11-203ENST00000395453 PRDM15P57071 1507 aaPredicted RBP20.99■□□□□ 0.95
SCAF11-203ENST00000395453 CEP152O94986 1710 aa20.99■□□□□ 0.95
SCAF11-203ENST00000395453 POTEAQ6S8J7 498 aa20.99■□□□□ 0.95
SCAF11-203ENST00000395453 CHIC2Q9UKJ5 165 aa20.99■□□□□ 0.95
SCAF11-203ENST00000395453 ANKRD30AQ9BXX3 1397 aa20.99■□□□□ 0.95
SCAF11-203ENST00000395453 XIRP1Q702N8 1843 aaKnown RBP20.97■□□□□ 0.95
SCAF11-203ENST00000395453 ARHGAP31Q2M1Z3 1444 aa20.97■□□□□ 0.95
SCAF11-203ENST00000395453 RNF216Q9NWF9 866 aaPredicted RBP20.97■□□□□ 0.95
SCAF11-203ENST00000395453 ADGRL2O95490 1459 aa20.95■□□□□ 0.94
SCAF11-203ENST00000395453 TMEM94Q12767 1356 aa20.94■□□□□ 0.94
SCAF11-203ENST00000395453 FAM50AQ14320 339 aaKnown RBP20.94■□□□□ 0.94
SCAF11-203ENST00000395453 STAG3Q9UJ98 1225 aa20.93■□□□□ 0.94
SCAF11-203ENST00000395453 TMEM2Q9UHN6 1383 aa20.92■□□□□ 0.94
SCAF11-203ENST00000395453 KCNA6P17658 529 aa20.92■□□□□ 0.94
SCAF11-203ENST00000395453 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.92■□□□□ 0.946e-8■□□□□ 11.1
SCAF11-203ENST00000395453 KANK1Q14678 1352 aa20.91■□□□□ 0.94
SCAF11-203ENST00000395453 LMTK2Q8IWU2 1503 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms