RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, human

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4-208	ENST00000508342	NEFL	P07196	543 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	CNGB1	Q14028	1251 aa	Predicted RBP	4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	CEP170	Q5SW79	1584 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	NBR1	Q14596	966 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	FANCA	O15360	1455 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	ARID3A	Q99856	593 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	CD109	Q6YHK3	1445 aa		4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	ZCCHC11	Q5TAX3	1644 aa	Known RBP	4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	CCDC18	Q5T9S5	1454 aa		4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	PLB1	Q6P1J6	1458 aa		4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	WASHC2C	Q9Y4E1	1318 aa		4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	LOC105371045	A0A1W2PR82	267 aa		4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	RRP7BP	Q9NSQ0	103 aa		4.15	□□□□□ -1.74
NEDD4-208	ENST00000508342	SPAG9	O60271	1321 aa	Known RBP	4.15	□□□□□ -1.75
NEDD4-208	ENST00000508342	KIF21B	O75037	1637 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	TARBP1	Q13395	1621 aa	Known RBP	4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	RAPGEF6	Q8TEU7	1601 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	EEA1	Q15075	1411 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	NEUROD1	Q13562	356 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	ABCA10	Q8WWZ4	1543 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	MYO5C	Q9NQX4	1742 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	FMN1	Q68DA7	1419 aa		4.14	□□□□□ -1.75
NEDD4-208	ENST00000508342	NUTM2B	A6NNL0	878 aa	Predicted RBP	4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	NUTM2E	B1AL46	878 aa	Predicted RBP	4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	ATF3	P18847	181 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	NUTM2A	Q8IVF1	878 aa	Predicted RBP	4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	FHOD3	Q2V2M9	1422 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	AKNA	Q7Z591	1439 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	UACA	Q9BZF9	1416 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	FOXD4L1	Q9NU39	408 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	ASXL2	Q76L83	1435 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	VSIG10	Q8N0Z9	540 aa		4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.13	□□□□□ -1.75
NEDD4-208	ENST00000508342	NPHP1	O15259	732 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	PODXL2	Q9NZ53	605 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	PAK3	O75914	559 aa	Predicted RBP	4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	NEFM	P07197	916 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	GTF3C3	Q9Y5Q9	886 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	POGK	Q9P215	609 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	CFAP43	Q8NDM7	1665 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	ITSN2	Q9NZM3	1697 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	KIF3B	O15066	747 aa		4.12	□□□□□ -1.75
NEDD4-208	ENST00000508342	RIMS1	Q86UR5	1692 aa	Known RBP	4.11	□□□□□ -1.75
NEDD4-208	ENST00000508342	EVA1C	P58658	441 aa		4.11	□□□□□ -1.75
NEDD4-208	ENST00000508342	KLHL34	Q8N239	644 aa		4.11	□□□□□ -1.75
NEDD4-208	ENST00000508342	WDR7	Q9Y4E6	1490 aa		4.11	□□□□□ -1.75
NEDD4-208	ENST00000508342	UBAP1L	F5GYI3	381 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	KDM2A	Q9Y2K7	1162 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	EFCAB5	A4FU69	1503 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	ARHGAP35	Q9NRY4	1499 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	NPM2	Q86SE8	214 aa	Known RBP	4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	KIAA0556	O60303	1618 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	NUTM2D	Q5VT03	806 aa	Predicted RBP	4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	KIAA0586	Q9BVV6	1533 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	CLSPN	Q9HAW4	1339 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	FER1L4	A9Z1Z3	1794 aa		4.1	□□□□□ -1.75
NEDD4-208	ENST00000508342	LMTK3	Q96Q04	1460 aa		4.09	□□□□□ -1.75
NEDD4-208	ENST00000508342	TIMELESS	Q9UNS1	1208 aa		4.09	□□□□□ -1.75
NEDD4-208	ENST00000508342	RUSC2	Q8N2Y8	1516 aa		4.09	□□□□□ -1.75
NEDD4-208	ENST00000508342	STK26	Q9P289	416 aa		4.09	□□□□□ -1.75
NEDD4-208	ENST00000508342	ARAP1	Q96P48	1450 aa		4.09	□□□□□ -1.76
NEDD4-208	ENST00000508342	ADGRL1	O94910	1474 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	RAPGEF3	O95398	923 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	ANKLE2	Q86XL3	938 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	CFAP44	Q96MT7	982 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	UHRF1BP1	Q6BDS2	1440 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	DISP3	Q9P2K9	1392 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	DENND4B	O75064	1496 aa	Predicted RBP	4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	MSH5	O43196	834 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	NPM3	O75607	178 aa	Known RBP	4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	CSB-PGBD3	P0DP91	1061 aa		4.08	□□□□□ -1.76
NEDD4-208	ENST00000508342	CFAP65	Q6ZU64	1925 aa	Known RBP	4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	ZFYVE16	Q7Z3T8	1539 aa		4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	TOM1	O60784	492 aa		4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	CENPB	P07199	599 aa	Predicted RBP	4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	RGL3	Q3MIN7	710 aa		4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	EPRS	P07814	1512 aa	Known RBP	4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
NEDD4-208	ENST00000508342	PROSER2	Q86WR7	435 aa	Predicted RBP	4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	THEMIS	Q8N1K5	641 aa	Predicted RBP	4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	ABCC2	Q92887	1545 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	IGF1R	P08069	1367 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	CEP162	Q5TB80	1403 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	ADCY10	Q96PN6	1610 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	SCAPER	Q9BY12	1400 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	PLEKHH2	Q8IVE3	1493 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	BCL11A	Q9H165	835 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	NCKAP5L	Q9HCH0	1330 aa		4.06	□□□□□ -1.76
NEDD4-208	ENST00000508342	CDK13	Q14004	1512 aa	Known RBP	4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	CLASP1	Q7Z460	1538 aa		4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	ANKRD30A	Q9BXX3	1397 aa		4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	TMC1	Q8TDI8	760 aa		4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	FAM135A	Q9P2D6	1515 aa		4.05	□□□□□ -1.76
NEDD4-208	ENST00000508342	SOX12	O15370	315 aa		4.04	□□□□□ -1.76
NEDD4-208	ENST00000508342	EHBP1L1	Q8N3D4	1523 aa		4.04	□□□□□ -1.76
NEDD4-208	ENST00000508342	CLTC	Q00610	1675 aa	Known RBP	4.04	□□□□□ -1.76
NEDD4-208	ENST00000508342	HSPA2	P54652	639 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms