RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 PLEKHH2Q8IVE3 1493 aa12.72□□□□□ -0.37
VPS13B-206ENST00000496144 ATP10BO94823 1461 aa12.72□□□□□ -0.37
VPS13B-206ENST00000496144 SCAF1Q9H7N4 1312 aaKnown RBP12.71□□□□□ -0.37
VPS13B-206ENST00000496144 KIF14Q15058 1648 aa12.71□□□□□ -0.37
VPS13B-206ENST00000496144 ABCA8O94911 1581 aa12.7□□□□□ -0.38
VPS13B-206ENST00000496144 GGT6Q6P531 493 aa12.69□□□□□ -0.38
VPS13B-206ENST00000496144 KANK1Q14678 1352 aa12.69□□□□□ -0.38
VPS13B-206ENST00000496144 TROQ12816 1431 aaPredicted RBP12.68□□□□□ -0.38
VPS13B-206ENST00000496144 FAM50AQ14320 339 aaKnown RBP12.68□□□□□ -0.38
VPS13B-206ENST00000496144 MAP3K1Q13233 1512 aa12.67□□□□□ -0.38
VPS13B-206ENST00000496144 HDGFP51858 240 aaKnown RBP12.66□□□□□ -0.38
VPS13B-206ENST00000496144 TIAM1Q13009 1591 aa12.65□□□□□ -0.38
VPS13B-206ENST00000496144 ZFYVE16Q7Z3T8 1539 aa12.64□□□□□ -0.39
VPS13B-206ENST00000496144 PCF11O94913 1555 aaKnown RBP12.63□□□□□ -0.39
VPS13B-206ENST00000496144 CASKIN1Q8WXD9 1431 aa12.63□□□□□ -0.39
VPS13B-206ENST00000496144 C9orf84Q5VXU9 1444 aa12.63□□□□□ -0.39
VPS13B-206ENST00000496144 PLCH2O75038 1416 aa12.63□□□□□ -0.39
VPS13B-206ENST00000496144 KIF13AQ9H1H9 1805 aa12.62□□□□□ -0.39
VPS13B-206ENST00000496144 PPP1R15AO75807 674 aaPredicted RBP12.62□□□□□ -0.39
VPS13B-206ENST00000496144 ZNF518AQ6AHZ1 1483 aa12.62□□□□□ -0.39
VPS13B-206ENST00000496144 MAGI2Q86UL8 1455 aa12.62□□□□□ -0.39
VPS13B-206ENST00000496144 SAMD9Q5K651 1589 aa12.61□□□□□ -0.39
VPS13B-206ENST00000496144 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.393e-7■■■■■ 30.8
VPS13B-206ENST00000496144 PPP6R1Q9UPN7 881 aa12.61□□□□□ -0.39
VPS13B-206ENST00000496144 KDM4FA0A1W2PPD8 638 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 CCER1Q8TC90 406 aaPredicted RBP12.6□□□□□ -0.39
VPS13B-206ENST00000496144 EID1Q9Y6B2 187 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■■□□□ 14.1
VPS13B-206ENST00000496144 UHRF1BP1Q6BDS2 1440 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 CNTLNQ9NXG0 1405 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 RRBP1Q9P2E9 1410 aaKnown RBP12.6□□□□□ -0.39
VPS13B-206ENST00000496144 ATP10AO60312 1499 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 ARAP3Q8WWN8 1544 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 FYCO1Q9BQS8 1478 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 WASHC2CQ9Y4E1 1318 aa12.6□□□□□ -0.39
VPS13B-206ENST00000496144 NUP153P49790 1475 aaKnown RBP12.59□□□□□ -0.39
VPS13B-206ENST00000496144 MAP3K4Q9Y6R4 1608 aa12.59□□□□□ -0.39
VPS13B-206ENST00000496144 CDK13Q14004 1512 aaKnown RBP12.58□□□□□ -0.4
VPS13B-206ENST00000496144 KIF3BO15066 747 aa12.58□□□□□ -0.4
VPS13B-206ENST00000496144 C14orf37Q86TY3 774 aa12.57□□□□□ -0.4
VPS13B-206ENST00000496144 CHGAP10645 457 aaKnown RBP12.56□□□□□ -0.4
VPS13B-206ENST00000496144 AFAP1Q8N556 730 aa12.56□□□□□ -0.4
VPS13B-206ENST00000496144 LRRIQ1Q96JM4 1722 aa12.56□□□□□ -0.4
VPS13B-206ENST00000496144 KANK4Q5T7N3 995 aaPredicted RBP12.55□□□□□ -0.4
VPS13B-206ENST00000496144 PHF23Q9BUL5 403 aaPredicted RBP12.53□□□□□ -0.4
VPS13B-206ENST00000496144 LRRC9Q6ZRR7 1453 aa12.53□□□□□ -0.4
VPS13B-206ENST00000496144 ABCA9Q8IUA7 1624 aa12.53□□□□□ -0.4
VPS13B-206ENST00000496144 ITGAEP38570 1179 aa12.53□□□□□ -0.4
VPS13B-206ENST00000496144 THEMISQ8N1K5 641 aaPredicted RBP12.53□□□□□ -0.4
VPS13B-206ENST00000496144 FBXO41Q8TF61 875 aa12.51□□□□□ -0.41
VPS13B-206ENST00000496144 EHBP1L1Q8N3D4 1523 aa12.5□□□□□ -0.41
VPS13B-206ENST00000496144 ANKLE2Q86XL3 938 aa12.5□□□□□ -0.41
VPS13B-206ENST00000496144 HSPA2P54652 639 aa12.49□□□□□ -0.41
VPS13B-206ENST00000496144 MYO5CQ9NQX4 1742 aa12.48□□□□□ -0.41
VPS13B-206ENST00000496144 PKD2Q13563 968 aa12.48□□□□□ -0.41
VPS13B-206ENST00000496144 TRIM52Q96A61 297 aa12.48□□□□□ -0.41
VPS13B-206ENST00000496144 PTPRMP28827 1452 aa12.47□□□□□ -0.41
VPS13B-206ENST00000496144 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.46□□□□□ -0.42
VPS13B-206ENST00000496144 CEBPAP49715 358 aaPredicted RBP12.45□□□□□ -0.42
VPS13B-206ENST00000496144 ANKRD30AQ9BXX3 1397 aa12.45□□□□□ -0.42
VPS13B-206ENST00000496144 ARHGEF40Q8TER5 1519 aa12.45□□□□□ -0.42
VPS13B-206ENST00000496144 TOM1O60784 492 aa12.44□□□□□ -0.42
VPS13B-206ENST00000496144 CHIC2Q9UKJ5 165 aa12.44□□□□□ -0.42
VPS13B-206ENST00000496144 CERKQ8TCT0 537 aa12.43□□□□□ -0.42
VPS13B-206ENST00000496144 UBAP1LF5GYI3 381 aa12.43□□□□□ -0.42
VPS13B-206ENST00000496144 ZNF326Q5BKZ1 582 aaKnown RBP12.43□□□□□ -0.42
VPS13B-206ENST00000496144 ACIN1Q9UKV3 1341 aaKnown RBP12.41□□□□□ -0.42
VPS13B-206ENST00000496144 RRP7BPQ9NSQ0 103 aa12.41□□□□□ -0.42
VPS13B-206ENST00000496144 ILDR1Q86SU0 546 aaPredicted RBP12.41□□□□□ -0.42
VPS13B-206ENST00000496144 KIAA1107Q9UPP5 1409 aa12.4□□□□□ -0.42
VPS13B-206ENST00000496144 HECW2Q9P2P5 1572 aa12.4□□□□□ -0.42
VPS13B-206ENST00000496144 ITSN2Q9NZM3 1697 aa12.4□□□□□ -0.42
VPS13B-206ENST00000496144 TRAPPC8Q9Y2L5 1435 aa12.4□□□□□ -0.42
VPS13B-206ENST00000496144 RIMS1Q86UR5 1692 aaKnown RBP12.4□□□□□ -0.42
VPS13B-206ENST00000496144 DHX57Q6P158 1386 aaKnown RBP12.39□□□□□ -0.43
VPS13B-206ENST00000496144 SUPT6HQ7KZ85 1726 aaKnown RBP12.39□□□□□ -0.43
VPS13B-206ENST00000496144 A2MP01023 1474 aa12.39□□□□□ -0.43
VPS13B-206ENST00000496144 PIP4K2BP78356 416 aa12.39□□□□□ -0.43
VPS13B-206ENST00000496144 SENP3Q9H4L4 574 aaPredicted RBP12.39□□□□□ -0.43
VPS13B-206ENST00000496144 MYOM3Q5VTT5 1437 aa12.39□□□□□ -0.43
VPS13B-206ENST00000496144 YEATS2Q9ULM3 1422 aa12.39□□□□□ -0.43
VPS13B-206ENST00000496144 CCDC141Q6ZP82 1450 aa12.39□□□□□ -0.43
VPS13B-206ENST00000496144 TNRQ92752 1358 aa12.38□□□□□ -0.43
VPS13B-206ENST00000496144 FOXD1Q16676 465 aa12.38□□□□□ -0.43
VPS13B-206ENST00000496144 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS13B-206ENST00000496144 FAM135AQ9P2D6 1515 aa12.37□□□□□ -0.43
VPS13B-206ENST00000496144 TTC37Q6PGP7 1564 aa12.37□□□□□ -0.43
VPS13B-206ENST00000496144 MEX3CQ5U5Q3 659 aaKnown RBP12.37□□□□□ -0.43
VPS13B-206ENST00000496144 CLSPNQ9HAW4 1339 aa12.37□□□□□ -0.43
VPS13B-206ENST00000496144 COL17A1Q9UMD9 1497 aaPredicted RBP12.36□□□□□ -0.43
VPS13B-206ENST00000496144 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS13B-206ENST00000496144 LMTK3Q96Q04 1460 aa12.36□□□□□ -0.43
VPS13B-206ENST00000496144 ZMYM3Q14202 1370 aa12.35□□□□□ -0.43
VPS13B-206ENST00000496144 NCOA2Q15596 1464 aa12.35□□□□□ -0.43
VPS13B-206ENST00000496144 MLH3Q9UHC1 1453 aa12.35□□□□□ -0.43
VPS13B-206ENST00000496144 DHX29Q7Z478 1369 aaKnown RBP12.34□□□□□ -0.43
VPS13B-206ENST00000496144 ZMYM4Q5VZL5 1548 aa12.34□□□□□ -0.43
VPS13B-206ENST00000496144 SYCP2Q9BX26 1530 aa12.33□□□□□ -0.44
VPS13B-206ENST00000496144 RTEL1-TNFRSF6BF6WH68 1400 aa12.33□□□□□ -0.44
VPS13B-206ENST00000496144 MADDQ8WXG6 1647 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms