RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.06□□□□□ -0.967e-7■■■■■ 178.2
VPS13B-206ENST00000496144 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.34□□□□□ -1.072e-7■■■■■ 102.3
VPS13B-206ENST00000496144 DDX21Q9NR30 783 aaKnown RBP eCLIP10.53□□□□□ -0.722e-21■■■■■ 83.8
VPS13B-206ENST00000496144 SF3B1O75533 1304 aaKnown RBP eCLIP9.21□□□□□ -0.936e-6■■■■■ 83.1
VPS13B-206ENST00000496144 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.17□□□□□ -1.14e-9■■■■■ 79.6
VPS13B-206ENST00000496144 TROVE2P10155 538 aaKnown RBP eCLIP8.5□□□□□ -1.058e-10■■■■■ 45.1
VPS13B-206ENST00000496144 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.17□□□□□ -0.782e-8■■■■■ 42.5
VPS13B-206ENST00000496144 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.25□□□□□ -1.253e-11■■■■■ 41.3
VPS13B-206ENST00000496144 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.64□□□□□ -1.194e-6■■■■■ 36.9
VPS13B-206ENST00000496144 PTBP1P26599 531 aaKnown RBP eCLIP7.58□□□□□ -1.21e-6■■■■■ 36.5
VPS13B-206ENST00000496144 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.57□□□□□ -1.362e-8■■■■■ 36
VPS13B-206ENST00000496144 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.25□□□□□ -0.774e-7■■■■■ 34.5
VPS13B-206ENST00000496144 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.36□□□□□ -1.071e-6■■■■■ 33.1
VPS13B-206ENST00000496144 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.393e-7■■■■■ 30.8
VPS13B-206ENST00000496144 RBFOX2O43251 390 aaKnown RBP eCLIP6.84□□□□□ -1.312e-6■■■■■ 30.4
VPS13B-206ENST00000496144 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.98□□□□□ -0.652e-7■■■■■ 27.4
VPS13B-206ENST00000496144 BCCIPQ9P287 314 aaKnown RBP eCLIP9.09□□□□□ -0.953e-8■■■■■ 27.3
VPS13B-206ENST00000496144 HLTFQ14527 1009 aaKnown RBP eCLIP8.84□□□□□ -0.994e-7■■■■■ 26.9
VPS13B-206ENST00000496144 GTF2F1P35269 517 aaKnown RBP eCLIP9.46□□□□□ -0.892e-7■■■■■ 26.9
VPS13B-206ENST00000496144 EIF3HO15372 352 aaKnown RBP eCLIP8.82□□□□□ -11e-6■■■■■ 26.8
VPS13B-206ENST00000496144 PCBP2Q15366 365 aaKnown RBP eCLIP8.19□□□□□ -1.13e-7■■■■□ 25.6
VPS13B-206ENST00000496144 U2AF2P26368 475 aaKnown RBP eCLIP9.62□□□□□ -0.871e-6■■■■□ 25.1
VPS13B-206ENST00000496144 QKIQ96PU8 341 aaKnown RBP eCLIP8.61□□□□□ -1.034e-7■■■■□ 24.9
VPS13B-206ENST00000496144 FXR2P51116 673 aaKnown RBP eCLIP9.33□□□□□ -0.927e-6■■■■□ 23.7
VPS13B-206ENST00000496144 MATR3P43243 847 aaKnown RBP eCLIP9.52□□□□□ -0.899e-6■■■■□ 23
VPS13B-206ENST00000496144 U2AF1Q01081 240 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■□ 22.1
VPS13B-206ENST00000496144 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.96□□□□□ -1.141e-6■■■■□ 21
VPS13B-206ENST00000496144 WDR43Q15061 677 aaKnown RBP eCLIP11.1□□□□□ -0.633e-6■■■■□ 20.8
VPS13B-206ENST00000496144 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.47□□□□□ -0.576e-7■■■■□ 20.3
VPS13B-206ENST00000496144 AATFQ9NY61 560 aaKnown RBP eCLIP10.02□□□□□ -0.815e-6■■■■□ 19.3
VPS13B-206ENST00000496144 KHSRPQ92945 711 aaKnown RBP eCLIP8.66□□□□□ -1.028e-10■■■□□ 19
VPS13B-206ENST00000496144 TARDBPQ13148 414 aaKnown RBP eCLIP8.39□□□□□ -1.073e-6■■■□□ 18.6
VPS13B-206ENST00000496144 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.46□□□□□ -1.058e-6■■■□□ 18.6
VPS13B-206ENST00000496144 ZNF622Q969S3 477 aaKnown RBP eCLIP10.93□□□□□ -0.669e-7■■■□□ 17.7
VPS13B-206ENST00000496144 NCBP2P52298 156 aaKnown RBP eCLIP7.84□□□□□ -1.152e-6■■■□□ 17.1
VPS13B-206ENST00000496144 PRPF4O43172 522 aaKnown RBP eCLIP8.65□□□□□ -1.034e-6■■■□□ 16.7
VPS13B-206ENST00000496144 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.1□□□□□ -1.117e-7■■■□□ 16.6
VPS13B-206ENST00000496144 EIF4G2P78344 907 aaKnown RBP eCLIP11.66□□□□□ -0.548e-7■■■□□ 16.1
VPS13B-206ENST00000496144 NIPBLQ6KC79 2804 aaeCLIP5.94□□□□□ -1.462e-7■■■□□ 16.1
VPS13B-206ENST00000496144 XRCC6P12956 609 aaKnown RBP eCLIP9.96□□□□□ -0.829e-6■■■□□ 15.7
VPS13B-206ENST00000496144 PPIGQ13427 754 aaKnown RBP eCLIP9.77□□□□□ -0.852e-6■■■□□ 15.5
VPS13B-206ENST00000496144 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■■□□□ 14.1
VPS13B-206ENST00000496144 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.7□□□□□ -1.021e-6■■□□□ 13.9
VPS13B-206ENST00000496144 AGGF1Q8N302 714 aaeCLIP8.6□□□□□ -1.032e-7■■□□□ 13.7
VPS13B-206ENST00000496144 EIF3DO15371 548 aaKnown RBP eCLIP9.14□□□□□ -0.953e-6■■□□□ 13.7
VPS13B-206ENST00000496144 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.42□□□□□ -0.92e-6■■□□□ 13.6
VPS13B-206ENST00000496144 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.31□□□□□ -0.927e-7■■□□□ 13.2
VPS13B-206ENST00000496144 HNRNPLP14866 589 aaKnown RBP eCLIP8.58□□□□□ -1.041e-8■■□□□ 11.6
VPS13B-206ENST00000496144 PUM1Q14671 1186 aaKnown RBP eCLIP8.9□□□□□ -0.984e-6■□□□□ 8.5
Retrieved 49 of 49 RNA–protein pairs in 10.8 ms