RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 NAP1L5Q96NT1 182 aaPredicted RBP21.53■■□□□ 1.04
MCF2L-229ENST00000488765 RRP7BPQ9NSQ0 103 aa21.53■■□□□ 1.04
MCF2L-229ENST00000488765 PODXL2Q9NZ53 605 aa21.53■■□□□ 1.04
MCF2L-229ENST00000488765 GLIPR1L2Q4G1C9 344 aa21.51■■□□□ 1.03
MCF2L-229ENST00000488765 EIF4G2P78344 907 aaKnown RBP eCLIP21.5■■□□□ 1.03
MCF2L-229ENST00000488765 PLIN1O60240 522 aa21.5■■□□□ 1.03
MCF2L-229ENST00000488765 GAPVD1Q14C86 1478 aa21.5■■□□□ 1.03
MCF2L-229ENST00000488765 RRAGDQ9NQL2 400 aaPredicted RBP21.5■■□□□ 1.03
MCF2L-229ENST00000488765 DNMBPQ6XZF7 1577 aa21.49■■□□□ 1.03
MCF2L-229ENST00000488765 FOXD1Q16676 465 aa21.48■■□□□ 1.03
MCF2L-229ENST00000488765 FHAD1B1AJZ9 1412 aa21.47■■□□□ 1.03
MCF2L-229ENST00000488765 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
MCF2L-229ENST00000488765 TCERG1O14776 1098 aaKnown RBP21.46■■□□□ 1.03
MCF2L-229ENST00000488765 LRRC9Q6ZRR7 1453 aa21.45■■□□□ 1.02
MCF2L-229ENST00000488765 FAM43AQ8N2R8 423 aa21.44■■□□□ 1.02
MCF2L-229ENST00000488765 A0A0U1RQG5 324 aaPredicted RBP21.42■■□□□ 1.02
MCF2L-229ENST00000488765 HSP90AA2PQ14568 343 aaPredicted RBP21.41■■□□□ 1.02
MCF2L-229ENST00000488765 POGKQ9P215 609 aa21.4■■□□□ 1.02
MCF2L-229ENST00000488765 CHMP7Q8WUX9 453 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-229ENST00000488765 ZNF777Q9ULD5 760 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-229ENST00000488765 TIAM1Q13009 1591 aa21.36■■□□□ 1.01
MCF2L-229ENST00000488765 SLC24A1O60721 1099 aa21.36■■□□□ 1.01
MCF2L-229ENST00000488765 PCF11O94913 1555 aaKnown RBP21.36■■□□□ 1.01
MCF2L-229ENST00000488765 ZNF326Q5BKZ1 582 aaKnown RBP21.35■■□□□ 1.01
MCF2L-229ENST00000488765 TMC1Q8TDI8 760 aa21.34■■□□□ 1.01
MCF2L-229ENST00000488765 DDRGK1Q96HY6 314 aa21.34■■□□□ 1.01
MCF2L-229ENST00000488765 SMG6Q86US8 1419 aaKnown RBP21.34■■□□□ 1.01
MCF2L-229ENST00000488765 RRP1P56182 461 aaKnown RBP21.34■■□□□ 1.01
MCF2L-229ENST00000488765 CNTLNQ9NXG0 1405 aa21.33■■□□□ 1.01
MCF2L-229ENST00000488765 PRDM2Q13029 1718 aa21.33■■□□□ 1
MCF2L-229ENST00000488765 ERCC6Q03468 1493 aa21.32■■□□□ 1
MCF2L-229ENST00000488765 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
MCF2L-229ENST00000488765 ZNF608Q9ULD9 1512 aaPredicted RBP21.31■■□□□ 1
MCF2L-229ENST00000488765 GZF1Q9H116 711 aaPredicted RBP21.31■■□□□ 1
MCF2L-229ENST00000488765 L3MBTL2Q969R5 705 aa21.31■■□□□ 1
MCF2L-229ENST00000488765 RGS3P49796 1198 aa21.3■■□□□ 1
MCF2L-229ENST00000488765 SLKQ9H2G2 1235 aaPredicted RBP21.3■■□□□ 1
MCF2L-229ENST00000488765 FMN1Q68DA7 1419 aa21.29■■□□□ 1
MCF2L-229ENST00000488765 HSP90AA1P07900 732 aaKnown RBP21.29■■□□□ 1
MCF2L-229ENST00000488765 RCAN3Q9UKA8 241 aa21.29■■□□□ 1
MCF2L-229ENST00000488765 RNF123Q5XPI4 1314 aa21.28■■□□□ 1
MCF2L-229ENST00000488765 CCDC7Q96M83 1385 aa21.28■■□□□ 1
MCF2L-229ENST00000488765 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
MCF2L-229ENST00000488765 CDCA7LQ96GN5 454 aa21.27■■□□□ 1
MCF2L-229ENST00000488765 KIF7Q2M1P5 1343 aa21.27■■□□□ 1
MCF2L-229ENST00000488765 PNNQ9H307 717 aaKnown RBP21.27■□□□□ 0.99
MCF2L-229ENST00000488765 ZNF644Q9H582 1327 aaPredicted RBP21.26■□□□□ 0.99
MCF2L-229ENST00000488765 CASKIN1Q8WXD9 1431 aa21.25■□□□□ 0.99
MCF2L-229ENST00000488765 SPRYD3Q8NCJ5 442 aa21.23■□□□□ 0.99
MCF2L-229ENST00000488765 CRBNQ96SW2 442 aa21.23■□□□□ 0.99
MCF2L-229ENST00000488765 PANK2Q9BZ23 570 aa21.22■□□□□ 0.99
MCF2L-229ENST00000488765 NBPF8Q3BBV2 869 aa21.21■□□□□ 0.99
MCF2L-229ENST00000488765 MS4A1P11836 297 aa21.2■□□□□ 0.98
MCF2L-229ENST00000488765 ARID3AQ99856 593 aa21.2■□□□□ 0.98
MCF2L-229ENST00000488765 C20orf194Q5TEA3 1177 aa21.19■□□□□ 0.98
MCF2L-229ENST00000488765 FGD6Q6ZV73 1430 aa21.18■□□□□ 0.98
MCF2L-229ENST00000488765 PNISRQ8TF01 805 aaKnown RBP21.17■□□□□ 0.98
MCF2L-229ENST00000488765 PTPRKQ15262 1439 aa21.17■□□□□ 0.98
MCF2L-229ENST00000488765 FYCO1Q9BQS8 1478 aa21.15■□□□□ 0.98
MCF2L-229ENST00000488765 CCDC18Q5T9S5 1454 aa21.14■□□□□ 0.97
MCF2L-229ENST00000488765 NCOA2Q15596 1464 aa21.13■□□□□ 0.97
MCF2L-229ENST00000488765 CDK13Q14004 1512 aaKnown RBP21.12■□□□□ 0.97
MCF2L-229ENST00000488765 MRC2Q9UBG0 1479 aa21.12■□□□□ 0.97
MCF2L-229ENST00000488765 CUL7Q14999 1698 aa21.09■□□□□ 0.97
MCF2L-229ENST00000488765 JPH4Q96JJ6 628 aa21.09■□□□□ 0.97
MCF2L-229ENST00000488765 XRCC6P12956 609 aaKnown RBP eCLIP21.08■□□□□ 0.97
MCF2L-229ENST00000488765 RRP9O43818 475 aaKnown RBP21.08■□□□□ 0.96
MCF2L-229ENST00000488765 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
MCF2L-229ENST00000488765 EFCAB5A4FU69 1503 aa21.06■□□□□ 0.96
MCF2L-229ENST00000488765 GRIN2BQ13224 1484 aa21.06■□□□□ 0.96
MCF2L-229ENST00000488765 CFDP1Q9UEE9 299 aaPredicted RBP21.06■□□□□ 0.96
MCF2L-229ENST00000488765 C8orf34Q49A92 452 aa21.05■□□□□ 0.96
MCF2L-229ENST00000488765 NCOA1Q15788 1441 aa21.05■□□□□ 0.96
MCF2L-229ENST00000488765 RBM10P98175 930 aaKnown RBP21.05■□□□□ 0.96
MCF2L-229ENST00000488765 MYOM3Q5VTT5 1437 aa21.04■□□□□ 0.96
MCF2L-229ENST00000488765 ABCA5Q8WWZ7 1642 aa21.03■□□□□ 0.96
MCF2L-229ENST00000488765 FAM161AQ3B820 660 aa21.03■□□□□ 0.96
MCF2L-229ENST00000488765 UACAQ9BZF9 1416 aa21.03■□□□□ 0.96
MCF2L-229ENST00000488765 SLC4A1APQ9BWU0 796 aaKnown RBP21.02■□□□□ 0.96
MCF2L-229ENST00000488765 MAP3K1Q13233 1512 aa21.01■□□□□ 0.95
MCF2L-229ENST00000488765 CTTNBP2Q8WZ74 1663 aa21.01■□□□□ 0.95
MCF2L-229ENST00000488765 MPHOSPH9Q99550 1183 aa21■□□□□ 0.95
MCF2L-229ENST00000488765 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
MCF2L-229ENST00000488765 KDM5BQ9UGL1 1544 aa21■□□□□ 0.95
MCF2L-229ENST00000488765 SEC24BO95487 1268 aa20.99■□□□□ 0.95
MCF2L-229ENST00000488765 GOLGA6L3A6NEY3 463 aa20.99■□□□□ 0.95
MCF2L-229ENST00000488765 L1TD1Q5T7N2 865 aaKnown RBP20.97■□□□□ 0.95
MCF2L-229ENST00000488765 MAGI3Q5TCQ9 1506 aa20.97■□□□□ 0.95
MCF2L-229ENST00000488765 PRG4Q92954 1404 aaPredicted RBP20.95■□□□□ 0.94
MCF2L-229ENST00000488765 EPRSP07814 1512 aaKnown RBP20.95■□□□□ 0.94
MCF2L-229ENST00000488765 PLEKHD1A6NEE1 506 aa20.95■□□□□ 0.94
MCF2L-229ENST00000488765 NAIPQ13075 1403 aa20.94■□□□□ 0.94
MCF2L-229ENST00000488765 CLCN1P35523 988 aa20.94■□□□□ 0.94
MCF2L-229ENST00000488765 IQGAP2Q13576 1575 aa20.94■□□□□ 0.94
MCF2L-229ENST00000488765 DHX29Q7Z478 1369 aaKnown RBP20.94■□□□□ 0.94
MCF2L-229ENST00000488765 ERBB4Q15303 1308 aa20.92■□□□□ 0.94
MCF2L-229ENST00000488765 IFT140Q96RY7 1462 aa20.92■□□□□ 0.94
MCF2L-229ENST00000488765 PLB1Q6P1J6 1458 aa20.91■□□□□ 0.94
MCF2L-229ENST00000488765 CFAP43Q8NDM7 1665 aa20.91■□□□□ 0.94
MCF2L-229ENST00000488765 KDM2AQ9Y2K7 1162 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms