RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 NISCHQ9Y2I1 1504 aa30.53■■■□□ 2.48
MCF2L-229ENST00000488765 PPARGC1BQ86YN6 1023 aaKnown RBP27.6■■■□□ 2.01
MCF2L-229ENST00000488765 HRCP23327 699 aa27.53■■■□□ 2
MCF2L-229ENST00000488765 PCGF6Q9BYE7 350 aa27.24■■□□□ 1.95
MCF2L-229ENST00000488765 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
MCF2L-229ENST00000488765 DCAF8L2P0C7V8 631 aa26.96■■□□□ 1.91
MCF2L-229ENST00000488765 PELP1Q8IZL8 1130 aaKnown RBP26.89■■□□□ 1.9
MCF2L-229ENST00000488765 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
MCF2L-229ENST00000488765 SCAF1Q9H7N4 1312 aaKnown RBP26.58■■□□□ 1.85
MCF2L-229ENST00000488765 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
MCF2L-229ENST00000488765 CHIC1Q5VXU3 224 aa26.06■■□□□ 1.76
MCF2L-229ENST00000488765 LOC105371045A0A1W2PR82 267 aa26.02■■□□□ 1.76
MCF2L-229ENST00000488765 MYT1Q01538 1121 aa25.79■■□□□ 1.72
MCF2L-229ENST00000488765 NEUROD1Q13562 356 aa25.73■■□□□ 1.71
MCF2L-229ENST00000488765 TRIM26Q12899 539 aaPredicted RBP25.7■■□□□ 1.7
MCF2L-229ENST00000488765 GTF3C3Q9Y5Q9 886 aa25.69■■□□□ 1.7
MCF2L-229ENST00000488765 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
MCF2L-229ENST00000488765 ACIN1Q9UKV3 1341 aaKnown RBP25.59■■□□□ 1.69
MCF2L-229ENST00000488765 CCDC180Q9P1Z9 1646 aa25.51■■□□□ 1.67
MCF2L-229ENST00000488765 EHMT2Q96KQ7 1210 aa25.42■■□□□ 1.66
MCF2L-229ENST00000488765 ZEB1P37275 1124 aaPredicted RBP25.39■■□□□ 1.65
MCF2L-229ENST00000488765 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
MCF2L-229ENST00000488765 YTHDC1Q96MU7 727 aaKnown RBP25.22■■□□□ 1.63
MCF2L-229ENST00000488765 CENPBP07199 599 aaPredicted RBP25.15■■□□□ 1.62
MCF2L-229ENST00000488765 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.09■■□□□ 1.61
MCF2L-229ENST00000488765 ABCC9O60706 1549 aa25.07■■□□□ 1.6
MCF2L-229ENST00000488765 FAM9AQ8IZU1 332 aaPredicted RBP25.05■■□□□ 1.6
MCF2L-229ENST00000488765 DIEXFQ68CQ4 756 aaKnown RBP25.03■■□□□ 1.6
MCF2L-229ENST00000488765 CCER1Q8TC90 406 aaPredicted RBP24.92■■□□□ 1.58
MCF2L-229ENST00000488765 BCL11AQ9H165 835 aa24.83■■□□□ 1.57
MCF2L-229ENST00000488765 TTBK1Q5TCY1 1321 aaPredicted RBP24.81■■□□□ 1.56
MCF2L-229ENST00000488765 SCRIBQ14160 1630 aa24.71■■□□□ 1.55
MCF2L-229ENST00000488765 MIER1Q8N108 512 aa24.44■■□□□ 1.5
MCF2L-229ENST00000488765 TRIM41Q8WV44 630 aa24.42■■□□□ 1.5
MCF2L-229ENST00000488765 CSRNP3Q8WYN3 585 aa24.39■■□□□ 1.49
MCF2L-229ENST00000488765 ANP32EQ9BTT0 268 aa24.35■■□□□ 1.49
MCF2L-229ENST00000488765 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.482e-7■■■□□ 15.6
MCF2L-229ENST00000488765 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
MCF2L-229ENST00000488765 ZNF316A6NFI3 1004 aaPredicted RBP24.25■■□□□ 1.47
MCF2L-229ENST00000488765 CECR2Q9BXF3 1484 aa24.22■■□□□ 1.47
MCF2L-229ENST00000488765 TSHZ2Q9NRE2 1034 aa24.16■■□□□ 1.46
MCF2L-229ENST00000488765 PRKCSHP14314 528 aaPredicted RBP24.12■■□□□ 1.45
MCF2L-229ENST00000488765 SUPT16HQ9Y5B9 1047 aaKnown RBP24.12■■□□□ 1.45
MCF2L-229ENST00000488765 BCANQ96GW7 911 aa24.11■■□□□ 1.45
MCF2L-229ENST00000488765 NACADO15069 1562 aa23.96■■□□□ 1.43
MCF2L-229ENST00000488765 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
MCF2L-229ENST00000488765 MROH2BQ7Z745 1585 aa23.93■■□□□ 1.42
MCF2L-229ENST00000488765 HNRNPUL2Q1KMD3 747 aaKnown RBP23.81■■□□□ 1.4
MCF2L-229ENST00000488765 WIZO95785 1651 aa23.74■■□□□ 1.39
MCF2L-229ENST00000488765 ITGAEP38570 1179 aa23.69■■□□□ 1.38
MCF2L-229ENST00000488765 KCNH8Q96L42 1107 aa23.62■■□□□ 1.37
MCF2L-229ENST00000488765 FKBP8Q14318 412 aa23.6■■□□□ 1.37
MCF2L-229ENST00000488765 RBM19Q9Y4C8 960 aaKnown RBP23.59■■□□□ 1.37
MCF2L-229ENST00000488765 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
MCF2L-229ENST00000488765 ANO8Q9HCE9 1232 aaPredicted RBP23.49■■□□□ 1.35
MCF2L-229ENST00000488765 MSH5O43196 834 aa23.47■■□□□ 1.35
MCF2L-229ENST00000488765 UBTFP17480 764 aaKnown RBP23.42■■□□□ 1.34
MCF2L-229ENST00000488765 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
MCF2L-229ENST00000488765 ERICH6Q7L0X2 663 aa23.39■■□□□ 1.33
MCF2L-229ENST00000488765 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
MCF2L-229ENST00000488765 CCDC88BA6NC98 1476 aa23.34■■□□□ 1.33
MCF2L-229ENST00000488765 CCDC136Q96JN2 1154 aa23.29■■□□□ 1.32
MCF2L-229ENST00000488765 CLSPNQ9HAW4 1339 aa23.29■■□□□ 1.32
MCF2L-229ENST00000488765 TRIM52Q96A61 297 aa23.23■■□□□ 1.31
MCF2L-229ENST00000488765 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
MCF2L-229ENST00000488765 UNC13AQ9UPW8 1703 aa23.2■■□□□ 1.31
MCF2L-229ENST00000488765 DEKP35659 375 aaKnown RBP23.2■■□□□ 1.3
MCF2L-229ENST00000488765 IRX6P78412 446 aaPredicted RBP23.2■■□□□ 1.3
MCF2L-229ENST00000488765 NEFLP07196 543 aa23.19■■□□□ 1.3
MCF2L-229ENST00000488765 SOGA1O94964 1423 aa23.18■■□□□ 1.3
MCF2L-229ENST00000488765 NBR1Q14596 966 aa23.16■■□□□ 1.3
MCF2L-229ENST00000488765 SALL2Q9Y467 1007 aaPredicted RBP23.16■■□□□ 1.3
MCF2L-229ENST00000488765 RTN4Q9NQC3 1192 aaKnown RBP23.12■■□□□ 1.29
MCF2L-229ENST00000488765 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
MCF2L-229ENST00000488765 BICRAQ9NZM4 1560 aa23.09■■□□□ 1.29
MCF2L-229ENST00000488765 RUSC2Q8N2Y8 1516 aa23.08■■□□□ 1.29
MCF2L-229ENST00000488765 CEP162Q5TB80 1403 aa23.07■■□□□ 1.28
MCF2L-229ENST00000488765 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.04■■□□□ 1.28
MCF2L-229ENST00000488765 SMARCA2P51531 1590 aa23.04■■□□□ 1.28
MCF2L-229ENST00000488765 DDX10Q13206 875 aaKnown RBP23.02■■□□□ 1.28
MCF2L-229ENST00000488765 HIRIP3Q9BW71 556 aaPredicted RBP23.01■■□□□ 1.27
MCF2L-229ENST00000488765 BAZ1BQ9UIG0 1483 aaKnown RBP22.94■■□□□ 1.26
MCF2L-229ENST00000488765 ATAD2BQ9ULI0 1458 aa22.9■■□□□ 1.26
MCF2L-229ENST00000488765 WRNQ14191 1432 aaPredicted RBP eCLIP22.9■■□□□ 1.26
MCF2L-229ENST00000488765 CDK11AQ9UQ88 783 aaPredicted RBP22.89■■□□□ 1.25
MCF2L-229ENST00000488765 APLP2Q06481 763 aa22.87■■□□□ 1.25
MCF2L-229ENST00000488765 IL27Q8NEV9 243 aa22.86■■□□□ 1.25
MCF2L-229ENST00000488765 FANCIQ9NVI1 1328 aa22.76■■□□□ 1.23
MCF2L-229ENST00000488765 PAK3O75914 559 aaPredicted RBP22.76■■□□□ 1.23
MCF2L-229ENST00000488765 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
MCF2L-229ENST00000488765 DHX57Q6P158 1386 aaKnown RBP22.68■■□□□ 1.22
MCF2L-229ENST00000488765 EIF5BO60841 1220 aaKnown RBP22.66■■□□□ 1.22
MCF2L-229ENST00000488765 TNIKQ9UKE5 1360 aa22.66■■□□□ 1.22
MCF2L-229ENST00000488765 B4GALNT3Q6L9W6 998 aa22.65■■□□□ 1.22
MCF2L-229ENST00000488765 ATP1B4Q9UN42 357 aaPredicted RBP22.61■■□□□ 1.21
MCF2L-229ENST00000488765 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
MCF2L-229ENST00000488765 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
MCF2L-229ENST00000488765 NOP58Q9Y2X3 529 aaKnown RBP22.59■■□□□ 1.21
MCF2L-229ENST00000488765 RTL5Q5HYW3 569 aaPredicted RBP22.55■■□□□ 1.2
MCF2L-229ENST00000488765 ANP32CO43423 234 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms