RNA–Protein interactions for RNA: ENST00000486515.1

UBR4-214, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-214ENST00000486515 PTPRTO14522 1441 aa10.67□□□□□ -0.7
UBR4-214ENST00000486515 ABCA8O94911 1581 aa10.67□□□□□ -0.7
UBR4-214ENST00000486515 NUP153P49790 1475 aaKnown RBP10.67□□□□□ -0.7
UBR4-214ENST00000486515 CFAP43Q8NDM7 1665 aa10.66□□□□□ -0.7
UBR4-214ENST00000486515 PPARGC1BQ86YN6 1023 aaKnown RBP10.66□□□□□ -0.7
UBR4-214ENST00000486515 SCAF1Q9H7N4 1312 aaKnown RBP10.65□□□□□ -0.7
UBR4-214ENST00000486515 MAP3K1Q13233 1512 aa10.65□□□□□ -0.7
UBR4-214ENST00000486515 KCNH8Q96L42 1107 aa10.65□□□□□ -0.7
UBR4-214ENST00000486515 ATP10BO94823 1461 aa10.64□□□□□ -0.71
UBR4-214ENST00000486515 STRCQ7RTU9 1775 aa10.64□□□□□ -0.71
UBR4-214ENST00000486515 CDK13Q14004 1512 aaKnown RBP10.63□□□□□ -0.71
UBR4-214ENST00000486515 ARAP3Q8WWN8 1544 aa10.63□□□□□ -0.71
UBR4-214ENST00000486515 KDM5BQ9UGL1 1544 aa10.63□□□□□ -0.71
UBR4-214ENST00000486515 TIAM1Q13009 1591 aa10.61□□□□□ -0.71
UBR4-214ENST00000486515 TROQ12816 1431 aaPredicted RBP10.61□□□□□ -0.71
UBR4-214ENST00000486515 PIP4K2BP78356 416 aa10.61□□□□□ -0.71
UBR4-214ENST00000486515 KANK4Q5T7N3 995 aaPredicted RBP10.61□□□□□ -0.71
UBR4-214ENST00000486515 LRRC9Q6ZRR7 1453 aa10.61□□□□□ -0.71
UBR4-214ENST00000486515 RAPGEF3O95398 923 aa10.6□□□□□ -0.71
UBR4-214ENST00000486515 RGS17Q9UGC6 210 aaPredicted RBP10.6□□□□□ -0.71
UBR4-214ENST00000486515 WDR7Q9Y4E6 1490 aa10.6□□□□□ -0.71
UBR4-214ENST00000486515 EHBP1L1Q8N3D4 1523 aa10.59□□□□□ -0.71
UBR4-214ENST00000486515 ZCCHC11Q5TAX3 1644 aaKnown RBP10.59□□□□□ -0.71
UBR4-214ENST00000486515 CCNB3Q8WWL7 1395 aa10.59□□□□□ -0.71
UBR4-214ENST00000486515 CFDP1Q9UEE9 299 aaPredicted RBP10.56□□□□□ -0.72
UBR4-214ENST00000486515 POGZQ7Z3K3 1410 aa10.56□□□□□ -0.72
UBR4-214ENST00000486515 UHRF1BP1Q6BDS2 1440 aa10.55□□□□□ -0.72
UBR4-214ENST00000486515 KIF14Q15058 1648 aa10.55□□□□□ -0.72
UBR4-214ENST00000486515 PREX1Q8TCU6 1659 aa10.54□□□□□ -0.72
UBR4-214ENST00000486515 ZNF777Q9ULD5 760 aaPredicted RBP10.54□□□□□ -0.72
UBR4-214ENST00000486515 ZNF335Q9H4Z2 1342 aaPredicted RBP10.54□□□□□ -0.72
UBR4-214ENST00000486515 MLECQ14165 292 aa10.53□□□□□ -0.72
UBR4-214ENST00000486515 FAM50AQ14320 339 aaKnown RBP10.53□□□□□ -0.72
UBR4-214ENST00000486515 EFCAB2Q5VUJ9 269 aa10.53□□□□□ -0.72
UBR4-214ENST00000486515 NCOA2Q15596 1464 aa10.53□□□□□ -0.72
UBR4-214ENST00000486515 CEBPAP49715 358 aaPredicted RBP10.52□□□□□ -0.73
UBR4-214ENST00000486515 TRIM26Q12899 539 aaPredicted RBP10.52□□□□□ -0.73
UBR4-214ENST00000486515 SUPT6HQ7KZ85 1726 aaKnown RBP10.52□□□□□ -0.73
UBR4-214ENST00000486515 PHLDB1Q86UU1 1377 aa10.52□□□□□ -0.73
UBR4-214ENST00000486515 TOM1O60784 492 aa10.51□□□□□ -0.73
UBR4-214ENST00000486515 IFFO2Q5TF58 517 aa10.51□□□□□ -0.73
UBR4-214ENST00000486515 POTEAQ6S8J7 498 aa10.51□□□□□ -0.73
UBR4-214ENST00000486515 SENP3Q9H4L4 574 aaPredicted RBP10.5□□□□□ -0.73
UBR4-214ENST00000486515 MYOM3Q5VTT5 1437 aa10.5□□□□□ -0.73
UBR4-214ENST00000486515 TTC37Q6PGP7 1564 aa10.49□□□□□ -0.73
UBR4-214ENST00000486515 MIA2Q96PC5 1412 aa10.49□□□□□ -0.73
UBR4-214ENST00000486515 FANCAO15360 1455 aa10.49□□□□□ -0.73
UBR4-214ENST00000486515 UPF1Q92900 1129 aaKnown RBP eCLIP10.48□□□□□ -0.73
UBR4-214ENST00000486515 TSPY4P0CV99 314 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 TSPY10P0CW01 314 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 ITGAEP38570 1179 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 RSPH4AQ5TD94 716 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 MYT1LQ9UL68 1186 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 PLCH2O75038 1416 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 ARHGAP5Q13017 1502 aa10.47□□□□□ -0.73
UBR4-214ENST00000486515 FGD6Q6ZV73 1430 aa10.46□□□□□ -0.74
UBR4-214ENST00000486515 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.46□□□□□ -0.74
UBR4-214ENST00000486515 ARHGEF40Q8TER5 1519 aa10.46□□□□□ -0.74
UBR4-214ENST00000486515 GPATCH8Q9UKJ3 1502 aaKnown RBP10.45□□□□□ -0.74
UBR4-214ENST00000486515 NCOA1Q15788 1441 aa10.45□□□□□ -0.74
UBR4-214ENST00000486515 PLEKHH2Q8IVE3 1493 aa10.44□□□□□ -0.74
UBR4-214ENST00000486515 CDC42BPAQ5VT25 1732 aa10.44□□□□□ -0.74
UBR4-214ENST00000486515 AKNAQ7Z591 1439 aa10.43□□□□□ -0.74
UBR4-214ENST00000486515 FRMPD1Q5SYB0 1578 aa10.43□□□□□ -0.74
UBR4-214ENST00000486515 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.42□□□□□ -0.74
UBR4-214ENST00000486515 ITSN2Q9NZM3 1697 aa10.42□□□□□ -0.74
UBR4-214ENST00000486515 PCGF6Q9BYE7 350 aa10.42□□□□□ -0.74
UBR4-214ENST00000486515 FER1L4A9Z1Z3 1794 aa10.42□□□□□ -0.74
UBR4-214ENST00000486515 RRBP1Q9P2E9 1410 aaKnown RBP10.41□□□□□ -0.74
UBR4-214ENST00000486515 MYO5CQ9NQX4 1742 aa10.41□□□□□ -0.74
UBR4-214ENST00000486515 ABCA9Q8IUA7 1624 aa10.41□□□□□ -0.74
UBR4-214ENST00000486515 HNRNPMP52272 730 aaKnown RBP eCLIP10.41□□□□□ -0.74
UBR4-214ENST00000486515 PREX2Q70Z35 1606 aa10.4□□□□□ -0.74
UBR4-214ENST00000486515 ZNF644Q9H582 1327 aaPredicted RBP10.4□□□□□ -0.74
UBR4-214ENST00000486515 SETD1AO15047 1707 aaKnown RBP10.4□□□□□ -0.74
UBR4-214ENST00000486515 NEO1Q92859 1461 aa10.39□□□□□ -0.75
UBR4-214ENST00000486515 KIAA1107Q9UPP5 1409 aa10.39□□□□□ -0.75
UBR4-214ENST00000486515 CDC42BPBQ9Y5S2 1711 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 NCKAP5LQ9HCH0 1330 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 CAMSAP2Q08AD1 1489 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 PTPN23Q9H3S7 1636 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 CHIC2Q9UKJ5 165 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 SCAPERQ9BY12 1400 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 CFAP74Q9C0B2 1584 aa10.38□□□□□ -0.75
UBR4-214ENST00000486515 ARHGEF12Q9NZN5 1544 aa10.37□□□□□ -0.75
UBR4-214ENST00000486515 DENND4BO75064 1496 aaPredicted RBP10.36□□□□□ -0.75
UBR4-214ENST00000486515 TCOF1Q13428 1488 aaKnown RBP10.36□□□□□ -0.75
UBR4-214ENST00000486515 SPAG9O60271 1321 aaKnown RBP10.36□□□□□ -0.75
UBR4-214ENST00000486515 ANKRD30AQ9BXX3 1397 aa10.35□□□□□ -0.75
UBR4-214ENST00000486515 CCDC141Q6ZP82 1450 aa10.35□□□□□ -0.75
UBR4-214ENST00000486515 SIGLEC1Q9BZZ2 1709 aa10.34□□□□□ -0.75
UBR4-214ENST00000486515 AFAP1Q8N556 730 aa10.34□□□□□ -0.75
UBR4-214ENST00000486515 ZNF518AQ6AHZ1 1483 aa10.34□□□□□ -0.75
UBR4-214ENST00000486515 SAMD9LQ8IVG5 1584 aa10.34□□□□□ -0.75
UBR4-214ENST00000486515 ACIN1Q9UKV3 1341 aaKnown RBP10.33□□□□□ -0.76
UBR4-214ENST00000486515 DAPK1P53355 1430 aa10.33□□□□□ -0.76
UBR4-214ENST00000486515 PTPRKQ15262 1439 aa10.33□□□□□ -0.76
UBR4-214ENST00000486515 RRP7BPQ9NSQ0 103 aa10.33□□□□□ -0.76
UBR4-214ENST00000486515 SYCP2Q9BX26 1530 aa10.33□□□□□ -0.76
UBR4-214ENST00000486515 SETD1BQ9UPS6 1966 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms