RNA–Protein interactions for RNA: ENST00000486515.1

UBR4-214, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-214ENST00000486515 NISCHQ9Y2I1 1504 aa15.92■□□□□ 0.14
UBR4-214ENST00000486515 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
UBR4-214ENST00000486515 ABCC9O60706 1549 aa14.93□□□□□ -0.02
UBR4-214ENST00000486515 DNAJC5Q9H3Z4 198 aa14.65□□□□□ -0.06
UBR4-214ENST00000486515 CCDC180Q9P1Z9 1646 aa13.98□□□□□ -0.17
UBR4-214ENST00000486515 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.25e-8■■□□□ 13.6
UBR4-214ENST00000486515 RB1CC1Q8TDY2 1594 aa13.65□□□□□ -0.22
UBR4-214ENST00000486515 TRIM41Q8WV44 630 aa13.58□□□□□ -0.24
UBR4-214ENST00000486515 CECR2Q9BXF3 1484 aa13.57□□□□□ -0.24
UBR4-214ENST00000486515 DCAF8L2P0C7V8 631 aa13.45□□□□□ -0.26
UBR4-214ENST00000486515 CC2D2AQ9P2K1 1620 aa13.36□□□□□ -0.27
UBR4-214ENST00000486515 CUX2O14529 1486 aa13.3□□□□□ -0.28
UBR4-214ENST00000486515 ZCCHC6Q5VYS8 1495 aaKnown RBP13.3□□□□□ -0.28
UBR4-214ENST00000486515 NACADO15069 1562 aa13.28□□□□□ -0.28
UBR4-214ENST00000486515 BICRAQ9NZM4 1560 aa13.28□□□□□ -0.28
UBR4-214ENST00000486515 UNC13AQ9UPW8 1703 aa13.19□□□□□ -0.3
UBR4-214ENST00000486515 DCAF1Q9Y4B6 1507 aa13.17□□□□□ -0.3
UBR4-214ENST00000486515 MYO15BQ96JP2 1530 aa13.13□□□□□ -0.31
UBR4-214ENST00000486515 AEBP2Q6ZN18 517 aaPredicted RBP13.1□□□□□ -0.31
UBR4-214ENST00000486515 EIF4G1Q04637 1599 aaKnown RBP13.07□□□□□ -0.32
UBR4-214ENST00000486515 SHROOM4Q9ULL8 1493 aa12.99□□□□□ -0.33
UBR4-214ENST00000486515 ERCC6Q03468 1493 aa12.98□□□□□ -0.33
UBR4-214ENST00000486515 SCRIBQ14160 1630 aa12.87□□□□□ -0.35
UBR4-214ENST00000486515 ILDR1Q86SU0 546 aaPredicted RBP12.77□□□□□ -0.37
UBR4-214ENST00000486515 TRHP20396 242 aaPredicted RBP12.62□□□□□ -0.39
UBR4-214ENST00000486515 OSCARQ8IYS5 282 aa12.58□□□□□ -0.4
UBR4-214ENST00000486515 THOC2Q8NI27 1593 aaKnown RBP12.52□□□□□ -0.41
UBR4-214ENST00000486515 NESP48681 1621 aa12.48□□□□□ -0.41
UBR4-214ENST00000486515 BAZ1AQ9NRL2 1556 aaPredicted RBP12.43□□□□□ -0.42
UBR4-214ENST00000486515 RIMBP3CA6NJZ7 1639 aa12.43□□□□□ -0.42
UBR4-214ENST00000486515 RIMBP3BA6NNM3 1639 aa12.43□□□□□ -0.42
UBR4-214ENST00000486515 RIMBP3Q9UFD9 1639 aa12.43□□□□□ -0.42
UBR4-214ENST00000486515 CYB5RLQ6IPT4 315 aa12.38□□□□□ -0.43
UBR4-214ENST00000486515 SMARCA2P51531 1590 aa12.38□□□□□ -0.43
UBR4-214ENST00000486515 SUPT5HO00267 1087 aaKnown RBP12.33□□□□□ -0.44
UBR4-214ENST00000486515 CHIC1Q5VXU3 224 aa12.33□□□□□ -0.44
UBR4-214ENST00000486515 NCAPD3P42695 1498 aa12.32□□□□□ -0.44
UBR4-214ENST00000486515 ARHGEF11O15085 1522 aa12.32□□□□□ -0.44
UBR4-214ENST00000486515 SMARCA4P51532 1647 aa12.27□□□□□ -0.44
UBR4-214ENST00000486515 RSF1Q96T23 1441 aaPredicted RBP12.26□□□□□ -0.45
UBR4-214ENST00000486515 MROH2BQ7Z745 1585 aa12.25□□□□□ -0.45
UBR4-214ENST00000486515 PDS5BQ9NTI5 1447 aa12.21□□□□□ -0.45
UBR4-214ENST00000486515 WIZO95785 1651 aa12.18□□□□□ -0.46
UBR4-214ENST00000486515 KIF21AQ7Z4S6 1674 aa12.17□□□□□ -0.46
UBR4-214ENST00000486515 ATAD2BQ9ULI0 1458 aa12.17□□□□□ -0.46
UBR4-214ENST00000486515 LAMC3Q9Y6N6 1575 aa12.17□□□□□ -0.46
UBR4-214ENST00000486515 BAZ1BQ9UIG0 1483 aaKnown RBP12.15□□□□□ -0.46
UBR4-214ENST00000486515 MRC2Q9UBG0 1479 aa12.14□□□□□ -0.47
UBR4-214ENST00000486515 ARAP1Q96P48 1450 aa12.13□□□□□ -0.47
UBR4-214ENST00000486515 WDR62O43379 1518 aa12.12□□□□□ -0.47
UBR4-214ENST00000486515 PEG3Q9GZU2 1588 aa12.11□□□□□ -0.47
UBR4-214ENST00000486515 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
UBR4-214ENST00000486515 TOP2AP11388 1531 aaKnown RBP12.05□□□□□ -0.48
UBR4-214ENST00000486515 LMTK3Q96Q04 1460 aa12.03□□□□□ -0.48
UBR4-214ENST00000486515 SOCS7O14512 581 aa12.01□□□□□ -0.49
UBR4-214ENST00000486515 FBXO41Q8TF61 875 aa11.99□□□□□ -0.49
UBR4-214ENST00000486515 KDM4FA0A1W2PPD8 638 aa11.96□□□□□ -0.49
UBR4-214ENST00000486515 CCDC88BA6NC98 1476 aa11.92□□□□□ -0.5
UBR4-214ENST00000486515 CADPSQ9ULU8 1353 aa11.91□□□□□ -0.5
UBR4-214ENST00000486515 CEP164Q9UPV0 1460 aa11.88□□□□□ -0.51
UBR4-214ENST00000486515 ILDR2Q71H61 639 aa11.87□□□□□ -0.51
UBR4-214ENST00000486515 ERCC6L2Q5T890 1561 aa11.84□□□□□ -0.51
UBR4-214ENST00000486515 CFTRP13569 1480 aa11.78□□□□□ -0.52
UBR4-214ENST00000486515 ZNF608Q9ULD9 1512 aaPredicted RBP11.78□□□□□ -0.52
UBR4-214ENST00000486515 FANCD2Q9BXW9 1451 aa11.76□□□□□ -0.53
UBR4-214ENST00000486515 FBLN2P98095 1184 aa11.76□□□□□ -0.53
UBR4-214ENST00000486515 PRDM2Q13029 1718 aa11.74□□□□□ -0.53
UBR4-214ENST00000486515 DISP3Q9P2K9 1392 aa11.74□□□□□ -0.53
UBR4-214ENST00000486515 HECW2Q9P2P5 1572 aa11.74□□□□□ -0.53
UBR4-214ENST00000486515 URB2Q14146 1524 aaKnown RBP11.72□□□□□ -0.53
UBR4-214ENST00000486515 IFT140Q96RY7 1462 aa11.68□□□□□ -0.54
UBR4-214ENST00000486515 CHD1O14646 1710 aa11.67□□□□□ -0.54
UBR4-214ENST00000486515 SYNJ2O15056 1496 aa11.64□□□□□ -0.55
UBR4-214ENST00000486515 WRNQ14191 1432 aaPredicted RBP eCLIP11.61□□□□□ -0.55
UBR4-214ENST00000486515 ABCC8Q09428 1581 aa11.6□□□□□ -0.55
UBR4-214ENST00000486515 GAPVD1Q14C86 1478 aa11.6□□□□□ -0.55
UBR4-214ENST00000486515 EIF4G3O43432 1585 aaKnown RBP11.59□□□□□ -0.55
UBR4-214ENST00000486515 CLASP1Q7Z460 1538 aa11.58□□□□□ -0.56
UBR4-214ENST00000486515 ADGRL1O94910 1474 aa11.57□□□□□ -0.56
UBR4-214ENST00000486515 AQRO60306 1485 aaKnown RBP eCLIP11.55□□□□□ -0.566e-7■■■■□ 22.9
UBR4-214ENST00000486515 SYNJ1O43426 1573 aa11.52□□□□□ -0.57
UBR4-214ENST00000486515 DNMBPQ6XZF7 1577 aa11.5□□□□□ -0.57
UBR4-214ENST00000486515 KDM6BO15054 1643 aa11.5□□□□□ -0.57
UBR4-214ENST00000486515 FAM69CQ0P6D2 419 aa11.5□□□□□ -0.57
UBR4-214ENST00000486515 TOPBP1Q92547 1522 aa11.5□□□□□ -0.57
UBR4-214ENST00000486515 KIF13AQ9H1H9 1805 aa11.49□□□□□ -0.57
UBR4-214ENST00000486515 CUX1P39880 1505 aa11.48□□□□□ -0.57
UBR4-214ENST00000486515 CHMP7Q8WUX9 453 aaPredicted RBP11.47□□□□□ -0.57
UBR4-214ENST00000486515 BIVM-ERCC5R4GMW8 1640 aa11.46□□□□□ -0.57
UBR4-214ENST00000486515 SOGA1O94964 1423 aa11.46□□□□□ -0.57
UBR4-214ENST00000486515 TOP2BQ02880 1626 aa11.46□□□□□ -0.58
UBR4-214ENST00000486515 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
UBR4-214ENST00000486515 POLA1P09884 1462 aaPredicted RBP11.42□□□□□ -0.58
UBR4-214ENST00000486515 SPATA31D1Q6ZQQ2 1576 aa11.41□□□□□ -0.58
UBR4-214ENST00000486515 ABCC10Q5T3U5 1492 aa11.4□□□□□ -0.58
UBR4-214ENST00000486515 KIF27Q86VH2 1401 aa11.39□□□□□ -0.59
UBR4-214ENST00000486515 FAM9AQ8IZU1 332 aaPredicted RBP11.39□□□□□ -0.59
UBR4-214ENST00000486515 SNAPC4Q5SXM2 1469 aa11.38□□□□□ -0.59
UBR4-214ENST00000486515 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
UBR4-214ENST00000486515 EEA1Q15075 1411 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms