RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	PLB1	Q6P1J6	1458 aa		13.91	□□□□□ -0.18
UBA3-208	ENST00000465627	POLA2	Q14181	598 aa		13.89	□□□□□ -0.19
UBA3-208	ENST00000465627	FMN1	Q68DA7	1419 aa		13.88	□□□□□ -0.19
UBA3-208	ENST00000465627	CASKIN1	Q8WXD9	1431 aa		13.88	□□□□□ -0.19
UBA3-208	ENST00000465627	EPRS	P07814	1512 aa	Known RBP	13.88	□□□□□ -0.19
UBA3-208	ENST00000465627	MAP3K1	Q13233	1512 aa		13.87	□□□□□ -0.19
UBA3-208	ENST00000465627	FYCO1	Q9BQS8	1478 aa		13.87	□□□□□ -0.19
UBA3-208	ENST00000465627	MED1	Q15648	1581 aa	Predicted RBP	13.86	□□□□□ -0.19
UBA3-208	ENST00000465627	P3H3	Q8IVL6	736 aa		13.86	□□□□□ -0.19
UBA3-208	ENST00000465627	FOXD4L1	Q9NU39	408 aa		13.86	□□□□□ -0.19
UBA3-208	ENST00000465627	RIMS1	Q86UR5	1692 aa	Known RBP	13.86	□□□□□ -0.19
UBA3-208	ENST00000465627	BCORL1	Q5H9F3	1711 aa		13.86	□□□□□ -0.19
UBA3-208	ENST00000465627	ABCC2	Q92887	1545 aa		13.85	□□□□□ -0.19
UBA3-208	ENST00000465627	LRRIQ1	Q96JM4	1722 aa		13.85	□□□□□ -0.19
UBA3-208	ENST00000465627	CFAP43	Q8NDM7	1665 aa		13.83	□□□□□ -0.19
UBA3-208	ENST00000465627	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.83	□□□□□ -0.2
UBA3-208	ENST00000465627	CARMIL2	Q6F5E8	1435 aa		13.82	□□□□□ -0.2
UBA3-208	ENST00000465627	TIAM1	Q13009	1591 aa		13.82	□□□□□ -0.2
UBA3-208	ENST00000465627	STRC	Q7RTU9	1775 aa		13.81	□□□□□ -0.2
UBA3-208	ENST00000465627	ABCA8	O94911	1581 aa		13.78	□□□□□ -0.2
UBA3-208	ENST00000465627	HECW1	Q76N89	1606 aa		13.77	□□□□□ -0.2
UBA3-208	ENST00000465627	RAPGEF6	Q8TEU7	1601 aa		13.77	□□□□□ -0.2
UBA3-208	ENST00000465627	NUP153	P49790	1475 aa	Known RBP	13.76	□□□□□ -0.21
UBA3-208	ENST00000465627	KANK4	Q5T7N3	995 aa	Predicted RBP	13.75	□□□□□ -0.21
UBA3-208	ENST00000465627	PTPRG	P23470	1445 aa		13.75	□□□□□ -0.21
UBA3-208	ENST00000465627	LTBP4	Q8N2S1	1624 aa		13.74	□□□□□ -0.21
UBA3-208	ENST00000465627	LRRC9	Q6ZRR7	1453 aa		13.74	□□□□□ -0.21
UBA3-208	ENST00000465627	CCDC18	Q5T9S5	1454 aa		13.73	□□□□□ -0.21
UBA3-208	ENST00000465627	MAGI3	Q5TCQ9	1506 aa		13.71	□□□□□ -0.21
UBA3-208	ENST00000465627	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.71	□□□□□ -0.21
UBA3-208	ENST00000465627	CDK13	Q14004	1512 aa	Known RBP	13.7	□□□□□ -0.22
UBA3-208	ENST00000465627	YEATS2	Q9ULM3	1422 aa		13.69	□□□□□ -0.22
UBA3-208	ENST00000465627	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.69	□□□□□ -0.22
UBA3-208	ENST00000465627	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.69	□□□□□ -0.22
UBA3-208	ENST00000465627	TRIM26	Q12899	539 aa	Predicted RBP	13.68	□□□□□ -0.22
UBA3-208	ENST00000465627	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.68	□□□□□ -0.22
UBA3-208	ENST00000465627	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.68	□□□□□ -0.22
UBA3-208	ENST00000465627	UHRF1BP1L	A0JNW5	1464 aa		13.67	□□□□□ -0.22
UBA3-208	ENST00000465627	IQSEC2	Q5JU85	1478 aa		13.67	□□□□□ -0.22
UBA3-208	ENST00000465627	UACA	Q9BZF9	1416 aa		13.66	□□□□□ -0.22
UBA3-208	ENST00000465627	EHBP1L1	Q8N3D4	1523 aa		13.66	□□□□□ -0.22
UBA3-208	ENST00000465627	ATP10B	O94823	1461 aa		13.65	□□□□□ -0.22
UBA3-208	ENST00000465627	UBAP1L	F5GYI3	381 aa		13.65	□□□□□ -0.22
UBA3-208	ENST00000465627	CD109	Q6YHK3	1445 aa		13.65	□□□□□ -0.22
UBA3-208	ENST00000465627	KDM5B	Q9UGL1	1544 aa		13.63	□□□□□ -0.23
UBA3-208	ENST00000465627	PREX1	Q8TCU6	1659 aa		13.62	□□□□□ -0.23
UBA3-208	ENST00000465627	HSPA1L	P34931	641 aa		13.62	□□□□□ -0.23
UBA3-208	ENST00000465627	RRBP1	Q9P2E9	1410 aa	Known RBP	13.61	□□□□□ -0.23
UBA3-208	ENST00000465627	ARAP3	Q8WWN8	1544 aa		13.61	□□□□□ -0.23
UBA3-208	ENST00000465627	CHRDL2	Q6WN34	429 aa		13.61	□□□□□ -0.23
UBA3-208	ENST00000465627	SRCAP	Q6ZRS2	3230 aa		13.61	□□□□□ -0.23
UBA3-208	ENST00000465627	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.6	□□□□□ -0.23
UBA3-208	ENST00000465627	PHLDB1	Q86UU1	1377 aa		13.6	□□□□□ -0.23
UBA3-208	ENST00000465627	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.6	□□□□□ -0.23
UBA3-208	ENST00000465627	NCOA2	Q15596	1464 aa		13.59	□□□□□ -0.23
UBA3-208	ENST00000465627	WDR7	Q9Y4E6	1490 aa		13.59	□□□□□ -0.23
UBA3-208	ENST00000465627	MTUS2	Q5JR59	1369 aa		13.59	□□□□□ -0.23
UBA3-208	ENST00000465627	TRO	Q12816	1431 aa	Predicted RBP	13.58	□□□□□ -0.24
UBA3-208	ENST00000465627	PCGF6	Q9BYE7	350 aa		13.58	□□□□□ -0.24
UBA3-208	ENST00000465627	PTPRT	O14522	1441 aa		13.57	□□□□□ -0.24
UBA3-208	ENST00000465627	RAPGEF3	O95398	923 aa		13.57	□□□□□ -0.24
UBA3-208	ENST00000465627	SIGLEC1	Q9BZZ2	1709 aa		13.56	□□□□□ -0.24
UBA3-208	ENST00000465627	KIF14	Q15058	1648 aa		13.55	□□□□□ -0.24
UBA3-208	ENST00000465627	FER1L4	A9Z1Z3	1794 aa		13.54	□□□□□ -0.24
UBA3-208	ENST00000465627	ZBTB22	O15209	634 aa		13.54	□□□□□ -0.24
UBA3-208	ENST00000465627	AKT1S1	Q96B36	256 aa		13.54	□□□□□ -0.24
UBA3-208	ENST00000465627	KCNH8	Q96L42	1107 aa		13.54	□□□□□ -0.24
UBA3-208	ENST00000465627	FRMPD1	Q5SYB0	1578 aa		13.53	□□□□□ -0.24
UBA3-208	ENST00000465627	ARID3C	A6NKF2	412 aa		13.53	□□□□□ -0.24
UBA3-208	ENST00000465627	MYOM3	Q5VTT5	1437 aa		13.52	□□□□□ -0.24
UBA3-208	ENST00000465627	RGS17	Q9UGC6	210 aa	Predicted RBP	13.52	□□□□□ -0.25
UBA3-208	ENST00000465627	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
UBA3-208	ENST00000465627	TTC37	Q6PGP7	1564 aa		13.51	□□□□□ -0.25
UBA3-208	ENST00000465627	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.51	□□□□□ -0.25
UBA3-208	ENST00000465627	CCNB3	Q8WWL7	1395 aa		13.51	□□□□□ -0.25
UBA3-208	ENST00000465627	FGD6	Q6ZV73	1430 aa		13.51	□□□□□ -0.25
UBA3-208	ENST00000465627	SETD1A	O15047	1707 aa	Known RBP	13.5	□□□□□ -0.25
UBA3-208	ENST00000465627	TCOF1	Q13428	1488 aa	Known RBP	13.49	□□□□□ -0.25
UBA3-208	ENST00000465627	CDC42BPA	Q5VT25	1732 aa		13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	ARHGEF40	Q8TER5	1519 aa		13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	MIA2	Q96PC5	1412 aa		13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	CEBPA	P49715	358 aa	Predicted RBP	13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	PIP4K2B	P78356	416 aa		13.47	□□□□□ -0.25
UBA3-208	ENST00000465627	PLEKHD1	A6NEE1	506 aa		13.46	□□□□□ -0.25
UBA3-208	ENST00000465627	ATXN8OS	P0DMR3	200 aa		13.46	□□□□□ -0.25
UBA3-208	ENST00000465627	PTPN23	Q9H3S7	1636 aa		13.46	□□□□□ -0.25
UBA3-208	ENST00000465627	MLEC	Q14165	292 aa		13.45	□□□□□ -0.26
UBA3-208	ENST00000465627	ITSN2	Q9NZM3	1697 aa		13.45	□□□□□ -0.26
UBA3-208	ENST00000465627	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
UBA3-208	ENST00000465627	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.45	□□□□□ -0.26
UBA3-208	ENST00000465627	PREX2	Q70Z35	1606 aa		13.42	□□□□□ -0.26
UBA3-208	ENST00000465627	CDC42BPB	Q9Y5S2	1711 aa		13.42	□□□□□ -0.26
UBA3-208	ENST00000465627	SETD1B	Q9UPS6	1966 aa	Known RBP	13.42	□□□□□ -0.26
UBA3-208	ENST00000465627	UHRF1BP1	Q6BDS2	1440 aa		13.41	□□□□□ -0.26
UBA3-208	ENST00000465627	ABCA9	Q8IUA7	1624 aa		13.4	□□□□□ -0.26
UBA3-208	ENST00000465627	PTPRK	Q15262	1439 aa		13.39	□□□□□ -0.27
UBA3-208	ENST00000465627	POGZ	Q7Z3K3	1410 aa		13.39	□□□□□ -0.27
UBA3-208	ENST00000465627	FANCA	O15360	1455 aa		13.39	□□□□□ -0.27
UBA3-208	ENST00000465627	POTEA	Q6S8J7	498 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms