RNA–Protein interactions for RNA: ENST00000381513.8

SMARCD1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCD1, Length 3,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-201ENST00000381513 PLIN1O60240 522 aa24.91■■□□□ 1.58
SMARCD1-201ENST00000381513 RRP7BPQ9NSQ0 103 aa24.9■■□□□ 1.58
SMARCD1-201ENST00000381513 CHIC2Q9UKJ5 165 aa24.88■■□□□ 1.57
SMARCD1-201ENST00000381513 ARID4BQ4LE39 1312 aaPredicted RBP24.87■■□□□ 1.57
SMARCD1-201ENST00000381513 RRP9O43818 475 aaKnown RBP24.87■■□□□ 1.57
SMARCD1-201ENST00000381513 FOXD1Q16676 465 aa24.87■■□□□ 1.57
SMARCD1-201ENST00000381513 PNISRQ8TF01 805 aaKnown RBP24.86■■□□□ 1.57
SMARCD1-201ENST00000381513 TOP2BQ02880 1626 aa24.86■■□□□ 1.57
SMARCD1-201ENST00000381513 AQRO60306 1485 aaKnown RBP eCLIP24.85■■□□□ 1.571e-6■■■■■ 28
SMARCD1-201ENST00000381513 MAP3K1Q13233 1512 aa24.84■■□□□ 1.57
SMARCD1-201ENST00000381513 L1TD1Q5T7N2 865 aaKnown RBP24.84■■□□□ 1.57
SMARCD1-201ENST00000381513 KDM5BQ9UGL1 1544 aa24.83■■□□□ 1.57
SMARCD1-201ENST00000381513 CRBNQ96SW2 442 aa24.81■■□□□ 1.56
SMARCD1-201ENST00000381513 HFM1A2PYH4 1435 aa24.8■■□□□ 1.56
SMARCD1-201ENST00000381513 NBPF8Q3BBV2 869 aa24.8■■□□□ 1.56
SMARCD1-201ENST00000381513 FMN1Q68DA7 1419 aa24.79■■□□□ 1.56
SMARCD1-201ENST00000381513 RGS3P49796 1198 aa24.78■■□□□ 1.56
SMARCD1-201ENST00000381513 ZNF326Q5BKZ1 582 aaKnown RBP24.78■■□□□ 1.56
SMARCD1-201ENST00000381513 FAM161AQ3B820 660 aa24.77■■□□□ 1.56
SMARCD1-201ENST00000381513 SLKQ9H2G2 1235 aaPredicted RBP24.77■■□□□ 1.56
SMARCD1-201ENST00000381513 PTPRKQ15262 1439 aa24.76■■□□□ 1.56
SMARCD1-201ENST00000381513 FGD6Q6ZV73 1430 aa24.74■■□□□ 1.55
SMARCD1-201ENST00000381513 NAIPQ13075 1403 aa24.73■■□□□ 1.55
SMARCD1-201ENST00000381513 CDCA7LQ96GN5 454 aa24.73■■□□□ 1.55
SMARCD1-201ENST00000381513 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.72■■□□□ 1.557e-6■■■□□ 16.5
SMARCD1-201ENST00000381513 A0A0U1RQG5 324 aaPredicted RBP24.71■■□□□ 1.55
SMARCD1-201ENST00000381513 GZF1Q9H116 711 aaPredicted RBP24.7■■□□□ 1.54
SMARCD1-201ENST00000381513 MTUS2Q5JR59 1369 aa24.69■■□□□ 1.54
SMARCD1-201ENST00000381513 MPHOSPH9Q99550 1183 aa24.69■■□□□ 1.54
SMARCD1-201ENST00000381513 DHX29Q7Z478 1369 aaKnown RBP24.68■■□□□ 1.54
SMARCD1-201ENST00000381513 PTPN23Q9H3S7 1636 aa24.67■■□□□ 1.54
SMARCD1-201ENST00000381513 CLCN1P35523 988 aa24.67■■□□□ 1.54
SMARCD1-201ENST00000381513 GOLGA6L3A6NEY3 463 aa24.66■■□□□ 1.54
SMARCD1-201ENST00000381513 C8orf34Q49A92 452 aa24.66■■□□□ 1.54
SMARCD1-201ENST00000381513 PANK2Q9BZ23 570 aa24.64■■□□□ 1.54
SMARCD1-201ENST00000381513 XRCC6P12956 609 aaKnown RBP eCLIP24.63■■□□□ 1.53
SMARCD1-201ENST00000381513 FHOD3Q2V2M9 1422 aa24.62■■□□□ 1.53
SMARCD1-201ENST00000381513 KTN1Q86UP2 1357 aaKnown RBP24.62■■□□□ 1.53
SMARCD1-201ENST00000381513 C20orf194Q5TEA3 1177 aa24.61■■□□□ 1.53
SMARCD1-201ENST00000381513 PDE3BQ13370 1112 aa24.59■■□□□ 1.53
SMARCD1-201ENST00000381513 CENPQQ7L2Z9 268 aaPredicted RBP24.59■■□□□ 1.53
SMARCD1-201ENST00000381513 PCF11O94913 1555 aaKnown RBP24.59■■□□□ 1.53
SMARCD1-201ENST00000381513 BECN1Q14457 450 aa24.58■■□□□ 1.53
SMARCD1-201ENST00000381513 CARMIL1Q5VZK9 1371 aa24.58■■□□□ 1.52
SMARCD1-201ENST00000381513 BIVM-ERCC5R4GMW8 1640 aa24.56■■□□□ 1.52
SMARCD1-201ENST00000381513 IGF1RP08069 1367 aa24.55■■□□□ 1.52
SMARCD1-201ENST00000381513 MYBBP1AQ9BQG0 1328 aaKnown RBP24.53■■□□□ 1.52
SMARCD1-201ENST00000381513 SPRYD3Q8NCJ5 442 aa24.52■■□□□ 1.52
SMARCD1-201ENST00000381513 SPATA31E1Q6ZUB1 1445 aa24.51■■□□□ 1.51
SMARCD1-201ENST00000381513 RBM10P98175 930 aaKnown RBP24.5■■□□□ 1.51
SMARCD1-201ENST00000381513 LRPPRCP42704 1394 aaKnown RBP24.5■■□□□ 1.51
SMARCD1-201ENST00000381513 KDM2BQ8NHM5 1336 aa24.49■■□□□ 1.51
SMARCD1-201ENST00000381513 CUX1P39880 1505 aa24.49■■□□□ 1.51
SMARCD1-201ENST00000381513 USP47Q96K76 1375 aa24.49■■□□□ 1.51
SMARCD1-201ENST00000381513 TRIM44Q96DX7 344 aaPredicted RBP24.49■■□□□ 1.51
SMARCD1-201ENST00000381513 CFAP43Q8NDM7 1665 aa24.48■■□□□ 1.51
SMARCD1-201ENST00000381513 MYH16Q9H6N6 1097 aa24.48■■□□□ 1.51
SMARCD1-201ENST00000381513 BRD4O60885 1362 aaPredicted RBP24.48■■□□□ 1.51
SMARCD1-201ENST00000381513 ATAD2BQ9ULI0 1458 aa24.48■■□□□ 1.51
SMARCD1-201ENST00000381513 ESPNB1AK53 854 aa24.47■■□□□ 1.51
SMARCD1-201ENST00000381513 KIF15Q9NS87 1388 aa24.47■■□□□ 1.51
SMARCD1-201ENST00000381513 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
SMARCD1-201ENST00000381513 RALBP1Q15311 655 aa24.45■■□□□ 1.5
SMARCD1-201ENST00000381513 PDCL3Q9H2J4 239 aa24.44■■□□□ 1.5
SMARCD1-201ENST00000381513 UNC13AQ9UPW8 1703 aa24.44■■□□□ 1.5
SMARCD1-201ENST00000381513 DENND4BO75064 1496 aaPredicted RBP24.43■■□□□ 1.5
SMARCD1-201ENST00000381513 NLRP13Q86W25 1043 aa24.41■■□□□ 1.5
SMARCD1-201ENST00000381513 FYCO1Q9BQS8 1478 aa24.4■■□□□ 1.5
SMARCD1-201ENST00000381513 MYOM3Q5VTT5 1437 aa24.4■■□□□ 1.5
SMARCD1-201ENST00000381513 CASKIN1Q8WXD9 1431 aa24.4■■□□□ 1.5
SMARCD1-201ENST00000381513 MRE11P49959 708 aa24.39■■□□□ 1.49
SMARCD1-201ENST00000381513 TPM2P07951 284 aa24.38■■□□□ 1.49
SMARCD1-201ENST00000381513 SEC24BO95487 1268 aa24.38■■□□□ 1.49
SMARCD1-201ENST00000381513 MIA2Q96PC5 1412 aa24.38■■□□□ 1.49
SMARCD1-201ENST00000381513 FSD2A1L4K1 749 aa24.37■■□□□ 1.49
SMARCD1-201ENST00000381513 ARID3AQ99856 593 aa24.36■■□□□ 1.49
SMARCD1-201ENST00000381513 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 ROCK2O75116 1388 aaKnown RBP24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 ERBB4Q15303 1308 aa24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 CARD11Q9BXL7 1154 aa24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 ANKRD30BQ9BXX2 1392 aa24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 MCM4P33991 863 aa24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 UPF2Q9HAU5 1272 aaKnown RBP24.35■■□□□ 1.49
SMARCD1-201ENST00000381513 TRAK2O60296 914 aa24.34■■□□□ 1.49
SMARCD1-201ENST00000381513 KIAA1211Q6ZU35 1233 aa24.34■■□□□ 1.49
SMARCD1-201ENST00000381513 RPRD2Q5VT52 1461 aaKnown RBP24.33■■□□□ 1.49
SMARCD1-201ENST00000381513 CALD1Q05682 793 aaKnown RBP24.33■■□□□ 1.48
SMARCD1-201ENST00000381513 GRPEL1Q9HAV7 217 aa24.33■■□□□ 1.48
SMARCD1-201ENST00000381513 USP19O94966 1318 aa24.32■■□□□ 1.48
SMARCD1-201ENST00000381513 CC2D1BQ5T0F9 858 aaKnown RBP24.3■■□□□ 1.48
SMARCD1-201ENST00000381513 AAMPQ13685 434 aa24.3■■□□□ 1.48
SMARCD1-201ENST00000381513 ANTXR1Q9H6X2 564 aa24.29■■□□□ 1.48
SMARCD1-201ENST00000381513 TEX14Q8IWB6 1497 aa24.29■■□□□ 1.48
SMARCD1-201ENST00000381513 ST20-MTHFSA0A0A6YYL1 179 aa24.29■■□□□ 1.48
SMARCD1-201ENST00000381513 CFTRP13569 1480 aa24.28■■□□□ 1.48
SMARCD1-201ENST00000381513 FAM13BQ9NYF5 915 aa24.28■■□□□ 1.48
SMARCD1-201ENST00000381513 FGD5Q6ZNL6 1462 aa24.28■■□□□ 1.48
SMARCD1-201ENST00000381513 TBC1D2Q9BYX2 928 aa24.26■■□□□ 1.47
SMARCD1-201ENST00000381513 KDM2AQ9Y2K7 1162 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms