RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 CCER1Q8TC90 406 aaPredicted RBP13.94□□□□□ -0.18
ATG4A-202ENST00000345734 KIAA0586Q9BVV6 1533 aa13.94□□□□□ -0.18
ATG4A-202ENST00000345734 RRBP1Q9P2E9 1410 aaKnown RBP13.93□□□□□ -0.18
ATG4A-202ENST00000345734 UGGT2Q9NYU1 1516 aa13.93□□□□□ -0.18
ATG4A-202ENST00000345734 CEP170Q5SW79 1584 aa13.92□□□□□ -0.18
ATG4A-202ENST00000345734 CACNB1Q02641 598 aaPredicted RBP13.92□□□□□ -0.18
ATG4A-202ENST00000345734 CIZ1Q9ULV3 898 aaPredicted RBP13.89□□□□□ -0.19
ATG4A-202ENST00000345734 CCNB3Q8WWL7 1395 aa13.89□□□□□ -0.19
ATG4A-202ENST00000345734 PHLDB1Q86UU1 1377 aa13.88□□□□□ -0.19
ATG4A-202ENST00000345734 DISP1Q96F81 1524 aa13.88□□□□□ -0.19
ATG4A-202ENST00000345734 KIAA0556O60303 1618 aa13.87□□□□□ -0.19
ATG4A-202ENST00000345734 NUP160Q12769 1436 aa13.86□□□□□ -0.19
ATG4A-202ENST00000345734 PAXIP1Q6ZW49 1069 aaPredicted RBP13.84□□□□□ -0.19
ATG4A-202ENST00000345734 CFAP44Q96MT7 982 aa13.84□□□□□ -0.19
ATG4A-202ENST00000345734 HECW1Q76N89 1606 aa13.83□□□□□ -0.2
ATG4A-202ENST00000345734 MTUS2Q5JR59 1369 aa13.82□□□□□ -0.2
ATG4A-202ENST00000345734 ITGAEP38570 1179 aa13.81□□□□□ -0.2
ATG4A-202ENST00000345734 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.81□□□□□ -0.2
ATG4A-202ENST00000345734 CHD1O14646 1710 aa13.81□□□□□ -0.2
ATG4A-202ENST00000345734 MAGI3Q5TCQ9 1506 aa13.8□□□□□ -0.2
ATG4A-202ENST00000345734 JPH4Q96JJ6 628 aa13.8□□□□□ -0.2
ATG4A-202ENST00000345734 CCDC18Q5T9S5 1454 aa13.8□□□□□ -0.2
ATG4A-202ENST00000345734 EPRSP07814 1512 aaKnown RBP13.8□□□□□ -0.2
ATG4A-202ENST00000345734 ARID3CA6NKF2 412 aa13.79□□□□□ -0.2
ATG4A-202ENST00000345734 CDK13Q14004 1512 aaKnown RBP13.79□□□□□ -0.2
ATG4A-202ENST00000345734 BBXQ8WY36 941 aaPredicted RBP13.79□□□□□ -0.2
ATG4A-202ENST00000345734 PLEKHG5O94827 1062 aa13.78□□□□□ -0.2
ATG4A-202ENST00000345734 FAM50AQ14320 339 aaKnown RBP13.78□□□□□ -0.2
ATG4A-202ENST00000345734 EHBP1L1Q8N3D4 1523 aa13.78□□□□□ -0.2
ATG4A-202ENST00000345734 SUPT6HQ7KZ85 1726 aaKnown RBP13.77□□□□□ -0.21
ATG4A-202ENST00000345734 NCOA2Q15596 1464 aa13.76□□□□□ -0.21
ATG4A-202ENST00000345734 RAPGEF6Q8TEU7 1601 aa13.76□□□□□ -0.21
ATG4A-202ENST00000345734 NUP153P49790 1475 aaKnown RBP13.74□□□□□ -0.21
ATG4A-202ENST00000345734 CARMIL2Q6F5E8 1435 aa13.74□□□□□ -0.21
ATG4A-202ENST00000345734 CHGAP10645 457 aaKnown RBP13.74□□□□□ -0.21
ATG4A-202ENST00000345734 FGD6Q6ZV73 1430 aa13.74□□□□□ -0.21
ATG4A-202ENST00000345734 KDM2AQ9Y2K7 1162 aa13.73□□□□□ -0.21
ATG4A-202ENST00000345734 PLB1Q6P1J6 1458 aa13.72□□□□□ -0.21
ATG4A-202ENST00000345734 ARHGEF11O15085 1522 aa13.72□□□□□ -0.21
ATG4A-202ENST00000345734 MYOM3Q5VTT5 1437 aa13.71□□□□□ -0.22
ATG4A-202ENST00000345734 ZBTB47Q9UFB7 747 aaPredicted RBP13.7□□□□□ -0.22
ATG4A-202ENST00000345734 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.7□□□□□ -0.22
ATG4A-202ENST00000345734 VSIG10Q8N0Z9 540 aa13.69□□□□□ -0.22
ATG4A-202ENST00000345734 PRG4Q92954 1404 aaPredicted RBP13.69□□□□□ -0.22
ATG4A-202ENST00000345734 DHX57Q6P158 1386 aaKnown RBP13.69□□□□□ -0.22
ATG4A-202ENST00000345734 RAB3GAP2Q9H2M9 1393 aa13.67□□□□□ -0.22
ATG4A-202ENST00000345734 PTPN23Q9H3S7 1636 aa13.66□□□□□ -0.22
ATG4A-202ENST00000345734 ABCA8O94911 1581 aa13.65□□□□□ -0.22
ATG4A-202ENST00000345734 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
ATG4A-202ENST00000345734 SETD5Q9C0A6 1442 aa13.65□□□□□ -0.22
ATG4A-202ENST00000345734 CLEC11AQ9Y240 323 aa13.65□□□□□ -0.22
ATG4A-202ENST00000345734 PRKCSHP14314 528 aaPredicted RBP13.64□□□□□ -0.23
ATG4A-202ENST00000345734 BCANQ96GW7 911 aa13.64□□□□□ -0.23
ATG4A-202ENST00000345734 PTPRKQ15262 1439 aa13.64□□□□□ -0.23
ATG4A-202ENST00000345734 RNF25Q96BH1 459 aaPredicted RBP13.63□□□□□ -0.23
ATG4A-202ENST00000345734 TSHZ2Q9NRE2 1034 aa13.63□□□□□ -0.23
ATG4A-202ENST00000345734 SPRYD3Q8NCJ5 442 aa13.63□□□□□ -0.23
ATG4A-202ENST00000345734 CDK11AQ9UQ88 783 aaPredicted RBP13.62□□□□□ -0.23
ATG4A-202ENST00000345734 PTPRGP23470 1445 aa13.62□□□□□ -0.23
ATG4A-202ENST00000345734 ERCC6L2Q5T890 1561 aa13.62□□□□□ -0.23
ATG4A-202ENST00000345734 TCOF1Q13428 1488 aaKnown RBP13.61□□□□□ -0.23
ATG4A-202ENST00000345734 TROQ12816 1431 aaPredicted RBP13.6□□□□□ -0.23
ATG4A-202ENST00000345734 CLASP1Q7Z460 1538 aa13.59□□□□□ -0.23
ATG4A-202ENST00000345734 ATP10BO94823 1461 aa13.59□□□□□ -0.23
ATG4A-202ENST00000345734 KIF14Q15058 1648 aa13.59□□□□□ -0.23
ATG4A-202ENST00000345734 CLSPNQ9HAW4 1339 aa13.59□□□□□ -0.23
ATG4A-202ENST00000345734 MIA2Q96PC5 1412 aa13.58□□□□□ -0.24
ATG4A-202ENST00000345734 ADCY10Q96PN6 1610 aa13.56□□□□□ -0.24
ATG4A-202ENST00000345734 NUBP1P53384 320 aa13.56□□□□□ -0.24
ATG4A-202ENST00000345734 MAPKBP1O60336 1514 aa13.55□□□□□ -0.24
ATG4A-202ENST00000345734 DCAF8Q5TAQ9 597 aa13.55□□□□□ -0.24
ATG4A-202ENST00000345734 SPDYE1Q8NFV5 336 aaPredicted RBP13.55□□□□□ -0.24
ATG4A-202ENST00000345734 HFM1A2PYH4 1435 aa13.54□□□□□ -0.24
ATG4A-202ENST00000345734 ZNF644Q9H582 1327 aaPredicted RBP13.54□□□□□ -0.24
ATG4A-202ENST00000345734 PLEKHD1A6NEE1 506 aa13.54□□□□□ -0.24
ATG4A-202ENST00000345734 CHIC2Q9UKJ5 165 aa13.54□□□□□ -0.24
ATG4A-202ENST00000345734 UACAQ9BZF9 1416 aa13.53□□□□□ -0.24
ATG4A-202ENST00000345734 NAIPQ13075 1403 aa13.53□□□□□ -0.24
ATG4A-202ENST00000345734 GPATCH8Q9UKJ3 1502 aaKnown RBP13.52□□□□□ -0.24
ATG4A-202ENST00000345734 ITSN2Q9NZM3 1697 aa13.51□□□□□ -0.25
ATG4A-202ENST00000345734 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
ATG4A-202ENST00000345734 RRP7BPQ9NSQ0 103 aa13.51□□□□□ -0.25
ATG4A-202ENST00000345734 GSE1Q14687 1217 aa13.5□□□□□ -0.25
ATG4A-202ENST00000345734 CREBZFQ9NS37 354 aa13.5□□□□□ -0.25
ATG4A-202ENST00000345734 TAOK2Q9UL54 1235 aa13.5□□□□□ -0.25
ATG4A-202ENST00000345734 CDC42BPAQ5VT25 1732 aa13.5□□□□□ -0.25
ATG4A-202ENST00000345734 CFDP1Q9UEE9 299 aaPredicted RBP13.49□□□□□ -0.25
ATG4A-202ENST00000345734 ABCC10Q5T3U5 1492 aa13.49□□□□□ -0.25
ATG4A-202ENST00000345734 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
ATG4A-202ENST00000345734 DNMT1P26358 1616 aaKnown RBP13.49□□□□□ -0.25
ATG4A-202ENST00000345734 DAPK1P53355 1430 aa13.49□□□□□ -0.25
ATG4A-202ENST00000345734 ABCC2Q92887 1545 aa13.48□□□□□ -0.25
ATG4A-202ENST00000345734 GCC2Q8IWJ2 1684 aa13.48□□□□□ -0.25
ATG4A-202ENST00000345734 HS6ST3Q8IZP7 471 aa13.48□□□□□ -0.25
ATG4A-202ENST00000345734 ABCC5O15440 1437 aa13.48□□□□□ -0.25
ATG4A-202ENST00000345734 CAMSAP2Q08AD1 1489 aa13.48□□□□□ -0.25
ATG4A-202ENST00000345734 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
ATG4A-202ENST00000345734 REM2Q8IYK8 340 aaPredicted RBP13.47□□□□□ -0.25
ATG4A-202ENST00000345734 KDM6BO15054 1643 aa13.46□□□□□ -0.25
ATG4A-202ENST00000345734 ZNF777Q9ULD5 760 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms