RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Anapc15P60007 132 aa20.85■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Ipo9Q91YE6 1041 aa20.83■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Rassf8Q8CJ96 419 aa20.83■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Aebp2Q9Z248 504 aaKnown RBP20.82■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Atp6v1dP57746 247 aa20.82■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Ddrgk1Q80WW9 315 aa20.81■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Fyco1Q8VDC1 1437 aa20.81■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Arhgap35Q91YM2 1499 aa20.8■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Pcmtd1P59913 357 aa20.79■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Rtf1A2AQ19 715 aaKnown RBP20.78■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Clstn1Q9EPL2 979 aa20.78■□□□□ 0.92
Ccdc88a-201ENSMUST00000040182 Cspp1B2RX88 1205 aa20.76■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 B4galnt3Q6L8S8 986 aa20.76■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Glipr1l2Q9CQ35 332 aa20.76■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Rock2P70336 1388 aa20.74■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Iffo2Q8R2V2 512 aa20.74■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Becn1O88597 448 aa20.73■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Nol10Q5RJG1 687 aaKnown RBP20.73■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 1700019A02RikA0A087WPV9 146 aa20.72■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Ipo8Q7TMY7 1010 aa20.72■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Dbr1Q923B1 550 aa20.72■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Spag9Q58A65 1321 aaKnown RBP20.72■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Spryd3E9Q9B3 442 aa20.71■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Armcx1Q9CX83 456 aa20.7■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Rrp7aQ9D1C9 280 aaKnown RBP20.7■□□□□ 0.91
Ccdc88a-201ENSMUST00000040182 Fmn1Q05860 1466 aa20.7■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Zscan21Q07231 555 aa20.69■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Tpm3P21107 285 aaKnown RBP20.67■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 VgfQ0VGU4 617 aa20.66■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Rtn4Q99P72 1162 aaKnown RBP20.66■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Trim30aP15533 496 aa20.65■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Supt16hQ920B9 1047 aa20.65■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Ush1cQ9ES64 910 aa20.65■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 Rsph3aQ3UFY4 516 aa20.64■□□□□ 0.9
Ccdc88a-201ENSMUST00000040182 CntlnA2AM05 1397 aa20.64■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Arhgap27A2AB59 869 aa20.63■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Kiaa0754Q69ZZ9 979 aa20.63■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Ylpm1Q9R0I7 1386 aaKnown RBP20.63■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 MecomP14404 1042 aa20.62■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Ccdc47Q9D024 483 aaKnown RBP20.61■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Cgnl1Q6AW69 1298 aa20.61■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Stard8Q8K031 1019 aa20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Plekhh2Q8C115 1491 aa20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Golga2Q921M4 999 aa20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Baz1bQ9Z277 1479 aa20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Zrsr2Q62377 462 aaKnown RBP20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Stk24Q99KH8 431 aa20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Ftsj3Q9DBE9 838 aaKnown RBP20.59■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Kif27Q7M6Z4 1394 aa20.58■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Tpm4Q6IRU2 248 aa20.58■□□□□ 0.89
Ccdc88a-201ENSMUST00000040182 Kdm5dQ62240 1548 aa20.57■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 NgefQ8CHT1 710 aa20.57■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Tpm1P58771 284 aa20.56■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 CgnP59242 1191 aa20.56■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Polr1aO35134 1717 aaKnown RBP20.56■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Tpd52l1O54818 204 aa20.55■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Speer4f1Q9D5Q6 258 aa20.55■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 AampJ3QN89 436 aa20.55■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Dusp9Q7TNL7 452 aa20.54■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Rundc1Q0VDN7 615 aa20.54■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 St18Q80TY4 1045 aa20.54■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Gtf2e1Q9D0D5 440 aa20.54■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 HdgfP51859 237 aaKnown RBP20.54■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Ccar1Q8CH18 1146 aaKnown RBP20.53■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Dhx57Q6P5D3 1388 aaKnown RBP20.53■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 A0A1L1SQF0 893 aa20.52■□□□□ 0.88
Ccdc88a-201ENSMUST00000040182 Ccer1Q9CQL2 403 aa20.51■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Tpm2P58774 284 aa20.51■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Pkd2O35245 966 aa20.51■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Cep162Q6ZQ06 1403 aa20.5■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Ccdc34Q3UI66 367 aa20.49■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 U2surpQ6NV83 1029 aaKnown RBP20.49■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Q3TQI7 289 aaKnown RBP20.49■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Rsph4aQ8BYM7 716 aa20.49■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 U2af1Q9D883 239 aaKnown RBP20.48■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Mfap1aC0HKD8 439 aaKnown RBP20.48■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Mfap1bC0HKD9 439 aaKnown RBP20.48■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Filip1lQ6P6L0 1131 aa20.47■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Map4P27546 1125 aaKnown RBP20.47■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Mre11Q61216 706 aa20.46■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Tmco5bQ80X59 307 aa20.46■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Cttnbp2B9EJA2 1648 aa20.46■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Cux1P53564 1515 aa20.46■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Hspa5P20029 655 aaKnown RBP20.46■□□□□ 0.87
Ccdc88a-201ENSMUST00000040182 Cnga1P29974 684 aa20.45■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Slc4a3P16283 1227 aa20.44■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Taf3Q5HZG4 932 aa20.44■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 UacaQ8CGB3 1411 aa20.44■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Ipo7Q9EPL8 1038 aaKnown RBP20.43■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Srek1Q8BZX4 494 aaKnown RBP20.42■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Sf3a1Q8K4Z5 791 aaKnown RBP20.42■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Noc3lQ8VI84 807 aaKnown RBP20.41■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Evc2Q8K1G2 1220 aa20.41■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 SafbD3YXK2 937 aaKnown RBP20.41■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Ifit1bl1D3Z6F0 470 aa20.41■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Rab11fip3Q8CHD8 1047 aa20.39■□□□□ 0.86
Ccdc88a-201ENSMUST00000040182 Hook1Q8BIL5 728 aa20.39■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Exoc6Q8R313 802 aa20.39■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Gprasp1Q5U4C1 1347 aa20.38■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Brpf1B2RRD7 1212 aa20.37■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 16.6 ms