Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
Tpm1P58771 Gm25239-201ENSMUST00000174915 86 ntBASIC37.87■■■■□ 3.65
Tpm1P58771 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
Tpm1P58771 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.59■■■■□ 3.45
Tpm1P58771 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
Tpm1P58771 Psd-208ENSMUST00000224556 2034 ntBASIC35.47■■■■□ 3.27
Tpm1P58771 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Tpm1P58771 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Tpm1P58771 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
Tpm1P58771 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
Tpm1P58771 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Tpm1P58771 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
Tpm1P58771 Gm15042-201ENSMUST00000120212 883 ntBASIC34.14■■■■□ 3.06
Tpm1P58771 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
Tpm1P58771 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
Tpm1P58771 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
Tpm1P58771 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.82■■■■□ 3
Tpm1P58771 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
Tpm1P58771 Gm15045-201ENSMUST00000117359 883 ntBASIC33.49■■■□□ 2.95
Tpm1P58771 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Tpm1P58771 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Tpm1P58771 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Tpm1P58771 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33.16■■■□□ 2.9
Tpm1P58771 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
Tpm1P58771 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.88
Tpm1P58771 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
Tpm1P58771 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Tpm1P58771 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Tpm1P58771 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Tpm1P58771 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.77■■■□□ 2.84
Tpm1P58771 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.77■■■□□ 2.84
Tpm1P58771 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.84
Tpm1P58771 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.65■■■□□ 2.82
Tpm1P58771 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Tpm1P58771 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Tpm1P58771 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.41■■■□□ 2.78
Tpm1P58771 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Tpm1P58771 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Tpm1P58771 Gm24109-201ENSMUST00000175489 103 ntBASIC32.3■■■□□ 2.76
Tpm1P58771 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Tpm1P58771 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.23■■■□□ 2.75
Tpm1P58771 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.16■■■□□ 2.74
Tpm1P58771 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Tpm1P58771 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.13■■■□□ 2.73
Tpm1P58771 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Tpm1P58771 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Tpm1P58771 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.11■■■□□ 2.73
Tpm1P58771 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC32.02■■■□□ 2.72
Tpm1P58771 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Tpm1P58771 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
Tpm1P58771 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Tpm1P58771 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Tpm1P58771 Gm23366-201ENSMUST00000175022 89 ntBASIC31.83■■■□□ 2.69
Tpm1P58771 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Tpm1P58771 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Tpm1P58771 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Tpm1P58771 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Tpm1P58771 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Tpm1P58771 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.64
Tpm1P58771 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Tpm1P58771 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
Tpm1P58771 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Tpm1P58771 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Tpm1P58771 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.37■■■□□ 2.61
Tpm1P58771 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.31■■■□□ 2.6
Tpm1P58771 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
Tpm1P58771 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.3■■■□□ 2.6
Tpm1P58771 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Tpm1P58771 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Tpm1P58771 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Tpm1P58771 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Tpm1P58771 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Tpm1P58771 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Tpm1P58771 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
Tpm1P58771 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Tpm1P58771 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Tpm1P58771 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
Tpm1P58771 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Tpm1P58771 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Tpm1P58771 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
Tpm1P58771 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Tpm1P58771 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC30.73■■■□□ 2.51
Tpm1P58771 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
Tpm1P58771 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.71■■■□□ 2.51
Tpm1P58771 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Tpm1P58771 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Tpm1P58771 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Tpm1P58771 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Tpm1P58771 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Tpm1P58771 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
Tpm1P58771 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Tpm1P58771 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.42■■■□□ 2.46
Tpm1P58771 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Tpm1P58771 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.38■■■□□ 2.45
Tpm1P58771 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Tpm1P58771 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Tpm1P58771 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Tpm1P58771 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
Tpm1P58771 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Tpm1P58771 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms