Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Gm25239-201ENSMUST00000174915 86 ntBASIC50.33■■■■■ 5.65
Rab11fip3Q8CHD8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46.45■■■■■ 5.03
Rab11fip3Q8CHD8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC45.93■■■■■ 4.94
Rab11fip3Q8CHD8 Gm15042-201ENSMUST00000120212 883 ntBASIC44.13■■■■■ 4.66
Rab11fip3Q8CHD8 Gm24109-201ENSMUST00000175489 103 ntBASIC43.52■■■■■ 4.56
Rab11fip3Q8CHD8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC43.47■■■■■ 4.55
Rab11fip3Q8CHD8 Gm15045-201ENSMUST00000117359 883 ntBASIC43.14■■■■■ 4.5
Rab11fip3Q8CHD8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC42.81■■■■■ 4.44
Rab11fip3Q8CHD8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC42.8■■■■■ 4.44
Rab11fip3Q8CHD8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42.52■■■■■ 4.4
Rab11fip3Q8CHD8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC42.34■■■■■ 4.37
Rab11fip3Q8CHD8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC42.2■■■■■ 4.35
Rab11fip3Q8CHD8 Gm23366-201ENSMUST00000175022 89 ntBASIC42.12■■■■■ 4.33
Rab11fip3Q8CHD8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41.86■■■■■ 4.29
Rab11fip3Q8CHD8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC41.21■■■■■ 4.19
Rab11fip3Q8CHD8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC41.2■■■■■ 4.19
Rab11fip3Q8CHD8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC40.96■■■■■ 4.15
Rab11fip3Q8CHD8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC40.81■■■■■ 4.12
Rab11fip3Q8CHD8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC40.79■■■■■ 4.12
Rab11fip3Q8CHD8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC40.61■■■■■ 4.09
Rab11fip3Q8CHD8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC40.51■■■■■ 4.08
Rab11fip3Q8CHD8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC40.44■■■■■ 4.06
Rab11fip3Q8CHD8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC40.38■■■■■ 4.06
Rab11fip3Q8CHD8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.25■■■■■ 4.03
Rab11fip3Q8CHD8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC40.25■■■■■ 4.03
Rab11fip3Q8CHD8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC40.24■■■■■ 4.03
Rab11fip3Q8CHD8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC40.16■■■■■ 4.02
Rab11fip3Q8CHD8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC40.15■■■■■ 4.02
Rab11fip3Q8CHD8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC40.11■■■■■ 4.01
Rab11fip3Q8CHD8 Psd-208ENSMUST00000224556 2034 ntBASIC40.01■■■■■ 4
Rab11fip3Q8CHD8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
Rab11fip3Q8CHD8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
Rab11fip3Q8CHD8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC39.85■■■■□ 3.97
Rab11fip3Q8CHD8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC39.82■■■■□ 3.97
Rab11fip3Q8CHD8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC39.75■■■■□ 3.95
Rab11fip3Q8CHD8 Gm25238-201ENSMUST00000174914 89 ntBASIC39.67■■■■□ 3.94
Rab11fip3Q8CHD8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC39.44■■■■□ 3.9
Rab11fip3Q8CHD8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
Rab11fip3Q8CHD8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC39.17■■■■□ 3.86
Rab11fip3Q8CHD8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC39.05■■■■□ 3.84
Rab11fip3Q8CHD8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
Rab11fip3Q8CHD8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC38.98■■■■□ 3.83
Rab11fip3Q8CHD8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
Rab11fip3Q8CHD8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38.86■■■■□ 3.81
Rab11fip3Q8CHD8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC38.8■■■■□ 3.8
Rab11fip3Q8CHD8 Gm27325-201ENSMUST00000175467 74 ntBASIC38.72■■■■□ 3.79
Rab11fip3Q8CHD8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
Rab11fip3Q8CHD8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38.64■■■■□ 3.78
Rab11fip3Q8CHD8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38.63■■■■□ 3.77
Rab11fip3Q8CHD8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC38.53■■■■□ 3.76
Rab11fip3Q8CHD8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC38.5■■■■□ 3.75
Rab11fip3Q8CHD8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC38.41■■■■□ 3.74
Rab11fip3Q8CHD8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC38.34■■■■□ 3.73
Rab11fip3Q8CHD8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
Rab11fip3Q8CHD8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC38.27■■■■□ 3.72
Rab11fip3Q8CHD8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC38.21■■■■□ 3.71
Rab11fip3Q8CHD8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
Rab11fip3Q8CHD8 Gm25262-201ENSMUST00000174934 133 ntBASIC38.02■■■■□ 3.68
Rab11fip3Q8CHD8 Rab21-202ENSMUST00000218831 843 ntBASIC37.96■■■■□ 3.67
Rab11fip3Q8CHD8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC37.95■■■■□ 3.67
Rab11fip3Q8CHD8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
Rab11fip3Q8CHD8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC37.92■■■■□ 3.66
Rab11fip3Q8CHD8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
Rab11fip3Q8CHD8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
Rab11fip3Q8CHD8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37.82■■■■□ 3.64
Rab11fip3Q8CHD8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC37.76■■■■□ 3.64
Rab11fip3Q8CHD8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
Rab11fip3Q8CHD8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
Rab11fip3Q8CHD8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC37.72■■■■□ 3.63
Rab11fip3Q8CHD8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC37.72■■■■□ 3.63
Rab11fip3Q8CHD8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
Rab11fip3Q8CHD8 Gm10524-201ENSMUST00000181931 1893 ntBASIC37.67■■■■□ 3.62
Rab11fip3Q8CHD8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC37.64■■■■□ 3.62
Rab11fip3Q8CHD8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
Rab11fip3Q8CHD8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Rab11fip3Q8CHD8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
Rab11fip3Q8CHD8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC37.49■■■■□ 3.59
Rab11fip3Q8CHD8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC37.49■■■■□ 3.59
Rab11fip3Q8CHD8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC37.48■■■■□ 3.59
Rab11fip3Q8CHD8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC37.41■■■■□ 3.58
Rab11fip3Q8CHD8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
Rab11fip3Q8CHD8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC37.36■■■■□ 3.57
Rab11fip3Q8CHD8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC37.36■■■■□ 3.57
Rab11fip3Q8CHD8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37.33■■■■□ 3.57
Rab11fip3Q8CHD8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC37.29■■■■□ 3.56
Rab11fip3Q8CHD8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC37.23■■■■□ 3.55
Rab11fip3Q8CHD8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC37.21■■■■□ 3.55
Rab11fip3Q8CHD8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37.15■■■■□ 3.54
Rab11fip3Q8CHD8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC37.15■■■■□ 3.54
Rab11fip3Q8CHD8 Gm42596-201ENSMUST00000196305 1958 ntBASIC37.12■■■■□ 3.53
Rab11fip3Q8CHD8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
Rab11fip3Q8CHD8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
Rab11fip3Q8CHD8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
Rab11fip3Q8CHD8 Gm26115-201ENSMUST00000175605 87 ntBASIC37.02■■■■□ 3.52
Rab11fip3Q8CHD8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC37.02■■■■□ 3.52
Rab11fip3Q8CHD8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC37■■■■□ 3.51
Rab11fip3Q8CHD8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
Rab11fip3Q8CHD8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36.93■■■■□ 3.5
Rab11fip3Q8CHD8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC36.92■■■■□ 3.5
Rab11fip3Q8CHD8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms