RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Rhox8Q6VSS7 320 aa28.35■■■□□ 2.13
Ccdc88a-201ENSMUST00000040182 Rpgrip1Q9EPQ2 1331 aa27.47■■□□□ 1.99
Ccdc88a-201ENSMUST00000040182 Cngb1E1AZ71 1325 aa26.83■■□□□ 1.89
Ccdc88a-201ENSMUST00000040182 Las1lA2BE28 776 aaKnown RBP26.59■■□□□ 1.85
Ccdc88a-201ENSMUST00000040182 Pelp1Q9DBD5 1123 aaKnown RBP26.38■■□□□ 1.81
Ccdc88a-201ENSMUST00000040182 Rtl1Q7M732 1744 aa25.76■■□□□ 1.71
Ccdc88a-201ENSMUST00000040182 Wdr66E9Q743 1299 aa25.43■■□□□ 1.66
Ccdc88a-201ENSMUST00000040182 Ehmt2Q9Z148 1263 aaKnown RBP25.29■■□□□ 1.64
Ccdc88a-201ENSMUST00000040182 Ccdc180J3QNE4 1664 aa25.18■■□□□ 1.62
Ccdc88a-201ENSMUST00000040182 Ube2uB1AUC4 352 aa25.16■■□□□ 1.62
Ccdc88a-201ENSMUST00000040182 Esf1Q3V1V3 845 aaKnown RBP25.1■■□□□ 1.61
Ccdc88a-201ENSMUST00000040182 Stra8P70278 393 aa25.04■■□□□ 1.6
Ccdc88a-201ENSMUST00000040182 Zeb1Q64318 1117 aa25.01■■□□□ 1.59
Ccdc88a-201ENSMUST00000040182 CenpbP27790 599 aa24.98■■□□□ 1.59
Ccdc88a-201ENSMUST00000040182 Trim41Q5NCC3 630 aa24.93■■□□□ 1.58
Ccdc88a-201ENSMUST00000040182 Ccdc136Q3TVA9 1136 aa24.85■■□□□ 1.57
Ccdc88a-201ENSMUST00000040182 Amer1Q7TS75 1132 aa24.82■■□□□ 1.56
Ccdc88a-201ENSMUST00000040182 NischQ80TM9 1593 aa24.8■■□□□ 1.56
Ccdc88a-201ENSMUST00000040182 Npm2Q80W85 207 aa24.74■■□□□ 1.55
Ccdc88a-201ENSMUST00000040182 NefmP08553 848 aa24.69■■□□□ 1.54
Ccdc88a-201ENSMUST00000040182 Myt1Q8CFC2 1127 aa24.56■■□□□ 1.52
Ccdc88a-201ENSMUST00000040182 Acin1Q9JIX8 1338 aaKnown RBP24.54■■□□□ 1.52
Ccdc88a-201ENSMUST00000040182 4930567H17RikQ3V0K5 233 aa24.52■■□□□ 1.52
Ccdc88a-201ENSMUST00000040182 Gab3Q8BSM5 595 aa24.44■■□□□ 1.5
Ccdc88a-201ENSMUST00000040182 Myt1lP97500 1187 aa24.31■■□□□ 1.48
Ccdc88a-201ENSMUST00000040182 Tnnt3Q9QZ47 272 aa24.11■■□□□ 1.45
Ccdc88a-201ENSMUST00000040182 Anp32bQ9EST5 272 aaKnown RBP24.04■■□□□ 1.44
Ccdc88a-201ENSMUST00000040182 NeflP08551 543 aa24■■□□□ 1.43
Ccdc88a-201ENSMUST00000040182 Cdk11bP24788 784 aaKnown RBP23.94■■□□□ 1.42
Ccdc88a-201ENSMUST00000040182 UbtfP25976 765 aaKnown RBP23.93■■□□□ 1.42
Ccdc88a-201ENSMUST00000040182 Slc24a1Q91WD8 1130 aa23.87■■□□□ 1.41
Ccdc88a-201ENSMUST00000040182 Rtl5Q5DTT4 599 aa23.84■■□□□ 1.41
Ccdc88a-201ENSMUST00000040182 NrdcQ8BHG1 1161 aa23.84■■□□□ 1.41
Ccdc88a-201ENSMUST00000040182 4933416C03RikQ3V063 378 aa23.81■■□□□ 1.4
Ccdc88a-201ENSMUST00000040182 HrcG5E8J6 738 aa23.75■■□□□ 1.39
Ccdc88a-201ENSMUST00000040182 Ttbk1Q6PCN3 1308 aa23.74■■□□□ 1.39
Ccdc88a-201ENSMUST00000040182 Nop58Q6DFW4 536 aaKnown RBP23.53■■□□□ 1.36
Ccdc88a-201ENSMUST00000040182 NclP09405 707 aaKnown RBP23.49■■□□□ 1.35
Ccdc88a-201ENSMUST00000040182 Pcgf6Q99NA9 353 aa23.43■■□□□ 1.34
Ccdc88a-201ENSMUST00000040182 Fam50aQ9WV03 339 aaKnown RBP23.3■■□□□ 1.32
Ccdc88a-201ENSMUST00000040182 TonslQ6NZL6 1363 aa23.26■■□□□ 1.31
Ccdc88a-201ENSMUST00000040182 Os9Q8K2C7 672 aa23.23■■□□□ 1.31
Ccdc88a-201ENSMUST00000040182 Eif5bQ05D44 1216 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-201ENSMUST00000040182 Zcchc6Q5BLK4 1491 aaKnown RBP23.13■■□□□ 1.29
Ccdc88a-201ENSMUST00000040182 Neurod1Q60867 357 aa23.09■■□□□ 1.29
Ccdc88a-201ENSMUST00000040182 Il27Q8K3I6 234 aa23.06■■□□□ 1.28
Ccdc88a-201ENSMUST00000040182 Anp32aO35381 247 aa22.99■■□□□ 1.27
Ccdc88a-201ENSMUST00000040182 ClspnQ80YR7 1315 aa22.91■■□□□ 1.26
Ccdc88a-201ENSMUST00000040182 Hdac5Q9Z2V6 1113 aa22.89■■□□□ 1.25
Ccdc88a-201ENSMUST00000040182 Abcc9P70170 1546 aa22.86■■□□□ 1.25
Ccdc88a-201ENSMUST00000040182 DiexfQ8BTT6 772 aaKnown RBP22.82■■□□□ 1.24
Ccdc88a-201ENSMUST00000040182 Ap3b1Q9Z1T1 1105 aa22.82■■□□□ 1.24
Ccdc88a-201ENSMUST00000040182 Supt5hO55201 1082 aaKnown RBP22.8■■□□□ 1.24
Ccdc88a-201ENSMUST00000040182 DaxxO35613 739 aa22.78■■□□□ 1.24
Ccdc88a-201ENSMUST00000040182 Mier1Q5UAK0 511 aa22.63■■□□□ 1.21
Ccdc88a-201ENSMUST00000040182 Nlrp6Q91WS2 869 aa22.58■■□□□ 1.21
Ccdc88a-201ENSMUST00000040182 Ccdc9Q8VC31 543 aaKnown RBP22.54■■□□□ 1.2
Ccdc88a-201ENSMUST00000040182 Upf2A2AT37 1269 aaKnown RBP22.5■■□□□ 1.19
Ccdc88a-201ENSMUST00000040182 Gm35339A0A140LHH9 1649 aa22.47■■□□□ 1.19
Ccdc88a-201ENSMUST00000040182 Dcaf1Q80TR8 1506 aa22.44■■□□□ 1.18
Ccdc88a-201ENSMUST00000040182 Ppargc1bQ8VHJ7 1014 aa22.4■■□□□ 1.18
Ccdc88a-201ENSMUST00000040182 Gm13697A2AK42 830 aa22.4■■□□□ 1.18
Ccdc88a-201ENSMUST00000040182 Ythdc1E9Q5K9 736 aaKnown RBP22.4■■□□□ 1.18
Ccdc88a-201ENSMUST00000040182 Ccer2J3QPU5 274 aa22.4■■□□□ 1.18
Ccdc88a-201ENSMUST00000040182 Brd4Q9ESU6 1400 aaKnown RBP22.37■■□□□ 1.17
Ccdc88a-201ENSMUST00000040182 CatipB9EKE5 520 aa22.36■■□□□ 1.17
Ccdc88a-201ENSMUST00000040182 Hnrnpul2Q00PI9 745 aaKnown RBP22.35■■□□□ 1.17
Ccdc88a-201ENSMUST00000040182 Npm1Q61937 292 aaKnown RBP22.33■■□□□ 1.17
Ccdc88a-201ENSMUST00000040182 Anks4bQ8K3X6 423 aa22.31■■□□□ 1.16
Ccdc88a-201ENSMUST00000040182 Aplp2Q06335 707 aa22.29■■□□□ 1.16
Ccdc88a-201ENSMUST00000040182 Cep164Q5DU05 1446 aa22.25■■□□□ 1.15
Ccdc88a-201ENSMUST00000040182 Hsp90aa1P07901 733 aaKnown RBP22.23■■□□□ 1.15
Ccdc88a-201ENSMUST00000040182 Plekhg3Q4VAC9 1341 aa22.21■■□□□ 1.15
Ccdc88a-201ENSMUST00000040182 Polr3glQ8R0C0 218 aa22.2■■□□□ 1.14
Ccdc88a-201ENSMUST00000040182 Rb1cc1Q9ESK9 1588 aa22.16■■□□□ 1.14
Ccdc88a-201ENSMUST00000040182 Erich6D3Z6S9 713 aa22.14■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Atp1b4Q99ME6 356 aa22.13■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Zbtb7cQ8VCZ7 619 aa22.12■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Calr4Q3TQS0 420 aa22.12■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Lmod2Q3UHZ5 550 aa22.12■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Clip1Q922J3 1391 aa22.1■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Gm13695A2AK44 830 aa22.08■■□□□ 1.13
Ccdc88a-201ENSMUST00000040182 Abcc8B2RUS7 1588 aa22.05■■□□□ 1.12
Ccdc88a-201ENSMUST00000040182 Chic1Q8CBW7 227 aa22.02■■□□□ 1.11
Ccdc88a-201ENSMUST00000040182 Trim44Q9QXA7 346 aa22■■□□□ 1.11
Ccdc88a-201ENSMUST00000040182 Wdr43Q6ZQL4 677 aaKnown RBP22■■□□□ 1.11
Ccdc88a-201ENSMUST00000040182 ArxO35085 564 aa21.97■■□□□ 1.11
Ccdc88a-201ENSMUST00000040182 Ppp4r2Q0VGB7 417 aa21.96■■□□□ 1.11
Ccdc88a-201ENSMUST00000040182 DekQ7TNV0 380 aaKnown RBP21.92■■□□□ 1.1
Ccdc88a-201ENSMUST00000040182 Csrnp3P59055 597 aa21.91■■□□□ 1.1
Ccdc88a-201ENSMUST00000040182 Clstn2Q9ER65 966 aa21.91■■□□□ 1.1
Ccdc88a-201ENSMUST00000040182 Zbtb4Q5F293 982 aa21.85■■□□□ 1.09
Ccdc88a-201ENSMUST00000040182 Adam1bQ8R534 806 aa21.83■■□□□ 1.09
Ccdc88a-201ENSMUST00000040182 Htatsf1Q8BGC0 757 aa21.83■■□□□ 1.08
Ccdc88a-201ENSMUST00000040182 Eid3Q3V124 375 aa21.78■■□□□ 1.08
Ccdc88a-201ENSMUST00000040182 Lmod3E9QA62 571 aa21.74■■□□□ 1.07
Ccdc88a-201ENSMUST00000040182 Fgd1P52734 960 aa21.74■■□□□ 1.07
Ccdc88a-201ENSMUST00000040182 Hsp90ab1P11499 724 aaKnown RBP21.73■■□□□ 1.07
Ccdc88a-201ENSMUST00000040182 Prdm10Q3UTQ7 1184 aa21.73■■□□□ 1.07
Ccdc88a-201ENSMUST00000040182 Sall2Q9QX96 1004 aa21.72■■□□□ 1.07
Retrieved 100 of 22,080 RNA–protein pairs in 1011.4 ms