RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	TEL2	P53038	688 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	SQS1	P53866	767 aa	Known RBP	4.14	□□□□□ -1.75
VPS27	YNR006W	REG1	Q00816	1014 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	CIK1	Q01649	594 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TRS31	Q03337	283 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-DR2	Q03483	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	AIM32	Q04689	311 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	ARP9	Q05123	467 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	ECM22	Q05958	814 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS27	YNR006W	DUS4	Q06063	367 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	ESC8	Q08119	714 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TGL5	Q12043	749 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	UPC2	Q12151	913 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	NFI1	Q12216	726 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-B	Q12260	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-OR2	Q12293	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-DR1	Q12392	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-OR1	Q12439	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	TY2A-DR3	Q99303	438 aa		4.14	□□□□□ -1.75
VPS27	YNR006W	GLK1	P17709	500 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	PRP4	P20053	465 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	OCA4	P25366	362 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	STE14	P32584	239 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	MEF2	P39677	819 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	PXA1	P41909	870 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	BIT61	P47041	543 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	MRPL22	P53881	309 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	ARG5,6	Q01217	863 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	PEX25	Q02969	394 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	ERB1	Q04660	807 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	HMI1	Q12039	706 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	NBP2	Q12163	236 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	PDH1	Q12428	516 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	VMA2	P16140	517 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	RPS7A	P26786	190 aa	Known RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	PRP45	P28004	379 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	PUP2	P32379	260 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	UBP13	P38187	747 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	MET18	P40469	1032 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	DJP1	P40564	432 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	CHA4	P43634	648 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	TAM41	P53230	385 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	GPB1	Q08886	897 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	KEL3	Q08979	651 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS27	YNR006W	REX3	Q12090	404 aa		4.13	□□□□□ -1.75
VPS27	YNR006W	HIS5	P07172	385 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	CBS1	P14066	229 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	THR1	P17423	357 aa	Known RBP	4.12	□□□□□ -1.75
VPS27	YNR006W	ERG8	P24521	451 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	EMC1	P25574	760 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
VPS27	YNR006W	STB6	P36085	766 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	LYS9	P38999	446 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	IST3	P40565	148 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS27	YNR006W	PRP31	P49704	494 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS27	YNR006W	PRP43	P53131	767 aa	Known RBP	4.12	□□□□□ -1.75
VPS27	YNR006W	VPS62	P53285	467 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	JJJ1	P53863	590 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	ASI2	P53895	289 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	OAZ1	Q02803	292 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	ATG21	Q02887	496 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	YDR132C	Q03900	495 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	AIM6	Q07716	390 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	RCN2	Q12044	265 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	NOP58	Q12499	511 aa	Known RBP	4.12	□□□□□ -1.75
VPS27	YNR006W	ISN1	Q99312	450 aa		4.12	□□□□□ -1.75
VPS27	YNR006W	SOD2	P00447	233 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	CAF20	P12962	161 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	TRX1	P22217	103 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	GEX2	P36173	615 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	CRG1	P38892	291 aa	RIP-Chip data	4.11	□□□□□ -1.75	RIP-Chip
VPS27	YNR006W	SMF1	P38925	575 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	GDI1	P39958	451 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	VPS4	P52917	437 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	NCS6	P53088	359 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	MDR1	P53258	950 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	BNI5	P53890	448 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	GCN5	Q03330	439 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	PPN1	Q04119	674 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	SKG3	Q06315	1026 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	SGO1	Q08490	590 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	YOR352W	Q08816	343 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	VCX1	Q99385	411 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	PET122	P10355	254 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	SED4	P25365	1065 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	PEP3	P27801	918 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	STB5	P38699	743 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	YHR112C	P38716	378 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
VPS27	YNR006W	PZF1	P39933	429 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	VFA1	P40080	203 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	FTR1	P40088	404 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	AAD10	P47182	288 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	ART5	P53244	586 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	INN1	P53901	409 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	NCS2	P53923	493 aa	Predicted RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	NGL2	Q03264	515 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	VPS64	Q03944	604 aa		4.11	□□□□□ -1.75
VPS27	YNR006W	VBA4	Q04602	768 aa	Known RBP	4.11	□□□□□ -1.75
VPS27	YNR006W	FRE6	Q12473	712 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 71.2 ms