RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeastyeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS27YNR006W DRS1P32892 752 aaKnown RBP10.1□□□□□ -0.79
VPS27YNR006W MTC1P47018 478 aaKnown RBP9.86□□□□□ -0.83
VPS27YNR006W BFR2Q06631 534 aaKnown RBP8.81□□□□□ -1
VPS27YNR006W FAP1P53971 965 aa8.64□□□□□ -1.03
VPS27YNR006W DIP2Q12220 943 aaPredicted RBP8.53□□□□□ -1.04
VPS27YNR006W AVT3P36062 692 aa8.5□□□□□ -1.05
VPS27YNR006W TFA1P36100 482 aa8.46□□□□□ -1.06
VPS27YNR006W PRY3P47033 881 aa8.11□□□□□ -1.11
VPS27YNR006W PRI1P10363 409 aa8.08□□□□□ -1.12
VPS27YNR006W AAD16Q02895 342 aa8.04□□□□□ -1.12
VPS27YNR006W RSE1Q04693 1361 aaKnown RBP7.98□□□□□ -1.13
VPS27YNR006W ISW2Q08773 1120 aa7.98□□□□□ -1.13
VPS27YNR006W RPG1P38249 964 aaKnown RBP7.87□□□□□ -1.15
VPS27YNR006W RQC2Q12532 1038 aaKnown RBP7.68□□□□□ -1.18
VPS27YNR006W RPL17AP05740 184 aaKnown RBP7.68□□□□□ -1.18
VPS27YNR006W RPL17BP46990 184 aaKnown RBP7.68□□□□□ -1.18
VPS27YNR006W TSR3Q12094 313 aaKnown RBP7.64□□□□□ -1.19
VPS27YNR006W HAA1Q12753 694 aaKnown RBP7.62□□□□□ -1.19
VPS27YNR006W YCK3P39962 524 aa7.6□□□□□ -1.19
VPS27YNR006W REB1P21538 810 aa7.54□□□□□ -1.2
VPS27YNR006W SPT21P35209 758 aa7.45□□□□□ -1.22
VPS27YNR006W RIM101P33400 625 aa7.38□□□□□ -1.23
VPS27YNR006W MRPL32P25348 183 aa7.36□□□□□ -1.23
VPS27YNR006W TAF7Q05021 590 aa7.32□□□□□ -1.24
VPS27YNR006W PTP3P40048 928 aa7.23□□□□□ -1.25
VPS27YNR006W OXP1P28273 1286 aa7.17□□□□□ -1.26
VPS27YNR006W YKR023WP36119 530 aaKnown RBP7.16□□□□□ -1.26
VPS27YNR006W SSP1P38871 571 aa7.13□□□□□ -1.27
VPS27YNR006W DMA1P38823 416 aa7.11□□□□□ -1.27
VPS27YNR006W YGL015CP33199 130 aa7.05□□□□□ -1.28
VPS27YNR006W YAH1Q12184 172 aaKnown RBP7.05□□□□□ -1.28
VPS27YNR006W YIL055CP40523 627 aaKnown RBP7.01□□□□□ -1.29
VPS27YNR006W YLR271WQ06152 274 aa7□□□□□ -1.29
VPS27YNR006W TFC8Q12308 588 aa7□□□□□ -1.29
VPS27YNR006W HOP09932 586 aa7□□□□□ -1.29
VPS27YNR006W CDC27P38042 758 aa6.96□□□□□ -1.29
VPS27YNR006W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.96□□□□□ -1.29not detected
VPS27YNR006W DCD1P06773 312 aa6.95□□□□□ -1.3
VPS27YNR006W RSM7P47150 247 aa6.93□□□□□ -1.3
VPS27YNR006W LEO1P38439 464 aa6.87□□□□□ -1.31
VPS27YNR006W MGA2P40578 1113 aa6.85□□□□□ -1.31
VPS27YNR006W BCH2P36122 765 aa6.81□□□□□ -1.32
VPS27YNR006W AI2P03876 854 aa6.8□□□□□ -1.32
VPS27YNR006W CST9Q06032 482 aa6.8□□□□□ -1.32
VPS27YNR006W PSD2P53037 1138 aaKnown RBP6.79□□□□□ -1.32
VPS27YNR006W UBP10P53874 792 aaPredicted RBP6.79□□□□□ -1.32
VPS27YNR006W MAP2P38174 421 aaKnown RBP6.75□□□□□ -1.33
VPS27YNR006W BBC1P47068 1157 aa6.71□□□□□ -1.34
VPS27YNR006W EPS1P40557 701 aa6.7□□□□□ -1.34
VPS27YNR006W BDF1P35817 686 aa6.65□□□□□ -1.34
VPS27YNR006W SCY1P53009 804 aa6.64□□□□□ -1.35
VPS27YNR006W SAS10Q12136 610 aaPredicted RBP6.62□□□□□ -1.35
VPS27YNR006W MRM1P25270 412 aa6.6□□□□□ -1.35
VPS27YNR006W RAM2P29703 316 aa6.58□□□□□ -1.36
VPS27YNR006W LEU3P08638 886 aa6.56□□□□□ -1.36
VPS27YNR006W SLX5P32828 619 aaKnown RBP6.56□□□□□ -1.36
VPS27YNR006W RCR1P38212 213 aa6.56□□□□□ -1.36
VPS27YNR006W TIF4632P39936 914 aaKnown RBP6.53□□□□□ -1.36
VPS27YNR006W RTG3P38165 486 aa6.51□□□□□ -1.37
VPS27YNR006W TGL3P40308 642 aa6.48□□□□□ -1.37
VPS27YNR006W SET1P38827 1080 aaKnown RBP6.47□□□□□ -1.37
VPS27YNR006W VPS29P38759 282 aa6.45□□□□□ -1.38
VPS27YNR006W MAK11P20484 414 aaKnown RBP6.44□□□□□ -1.38
VPS27YNR006W BUD31P25337 157 aaPredicted RBP6.43□□□□□ -1.38
VPS27YNR006W YPR148CQ06523 435 aa6.41□□□□□ -1.38
VPS27YNR006W DMA2P53924 522 aa6.37□□□□□ -1.39
VPS27YNR006W YMR1P47147 688 aaKnown RBP RIP-Chip data6.36□□□□□ -1.39not detected
VPS27YNR006W VPS70P47161 811 aa6.36□□□□□ -1.39
VPS27YNR006W STS1P38637 319 aa6.36□□□□□ -1.39
VPS27YNR006W COQ8P27697 501 aa6.35□□□□□ -1.39
VPS27YNR006W IFH1P39520 1085 aa6.35□□□□□ -1.39
VPS27YNR006W ABP1P15891 592 aaKnown RBP6.34□□□□□ -1.39
VPS27YNR006W CKB1P43639 278 aa6.34□□□□□ -1.39
VPS27YNR006W DBP1P24784 617 aaKnown RBP6.32□□□□□ -1.4
VPS27YNR006W YFR006WP43590 535 aa6.31□□□□□ -1.4
VPS27YNR006W YOR238WQ08634 303 aa6.3□□□□□ -1.4
VPS27YNR006W EDS1P38073 919 aa6.3□□□□□ -1.4
VPS27YNR006W UBP9P39967 754 aa6.3□□□□□ -1.4
VPS27YNR006W NOP53Q12080 455 aaKnown RBP6.3□□□□□ -1.4
VPS27YNR006W SPB4P25808 606 aaPredicted RBP6.29□□□□□ -1.4
VPS27YNR006W NSR1P27476 414 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
VPS27YNR006W RPN1P38764 993 aaKnown RBP6.29□□□□□ -1.4
VPS27YNR006W MIF2P35201 549 aa6.28□□□□□ -1.4
VPS27YNR006W YAP5P40574 245 aa6.25□□□□□ -1.41
VPS27YNR006W DSF2P38213 736 aa6.24□□□□□ -1.41
VPS27YNR006W PIB1Q06651 286 aa6.24□□□□□ -1.41
VPS27YNR006W PBS2P08018 668 aa6.22□□□□□ -1.41
VPS27YNR006W PTC3P34221 468 aaKnown RBP6.22□□□□□ -1.41
VPS27YNR006W RLF2Q12495 606 aa6.2□□□□□ -1.42
VPS27YNR006W MST1P07236 462 aa6.19□□□□□ -1.42
VPS27YNR006W VMA1P17255 1071 aaKnown RBP6.19□□□□□ -1.42
VPS27YNR006W REF2P42073 533 aaPredicted RBP6.18□□□□□ -1.42
VPS27YNR006W SIS1P25294 352 aaKnown RBP6.15□□□□□ -1.43
VPS27YNR006W MAM3Q12296 706 aa6.13□□□□□ -1.43
VPS27YNR006W SAM3Q08986 587 aa6.13□□□□□ -1.43
VPS27YNR006W YNR021WP53723 404 aaKnown RBP6.12□□□□□ -1.43
VPS27YNR006W GRE2Q12068 342 aaKnown RBP6.11□□□□□ -1.43
VPS27YNR006W COX6P00427 148 aa6.11□□□□□ -1.43
VPS27YNR006W IES2P40154 320 aa6.11□□□□□ -1.43
VPS27YNR006W NUP42P49686 430 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms