RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 PRUNE2Q8WUY3 3088 aa4.93□□□□□ -1.62
TTC28-208ENST00000612946 CRYBG3Q68DQ2 2970 aa4.92□□□□□ -1.62
TTC28-208ENST00000612946 DCHS2Q6V1P9 2916 aa4.91□□□□□ -1.62
TTC28-208ENST00000612946 C10orf95Q9H7T3 257 aa4.9□□□□□ -1.62
TTC28-208ENST00000612946 H0YAA0 97 aa4.9□□□□□ -1.63
TTC28-208ENST00000612946 SRRM2Q9UQ35 2752 aaKnown RBP4.9□□□□□ -1.63
TTC28-208ENST00000612946 DMXL2Q8TDJ6 3036 aa4.89□□□□□ -1.63
TTC28-208ENST00000612946 KRTAP1-5Q9BYS1 174 aa4.89□□□□□ -1.63
TTC28-208ENST00000612946 LAMA1P25391 3075 aa4.88□□□□□ -1.63
TTC28-208ENST00000612946 WDFY4Q6ZS81 3184 aa4.88□□□□□ -1.63
TTC28-208ENST00000612946 Q5VSD8 79 aa4.87□□□□□ -1.63
TTC28-208ENST00000612946 MKI67P46013 3256 aaKnown RBP4.86□□□□□ -1.63
TTC28-208ENST00000612946 COL12A1Q99715 3063 aa4.85□□□□□ -1.63
TTC28-208ENST00000612946 Q6ZRN7 208 aaPredicted RBP4.85□□□□□ -1.63
TTC28-208ENST00000612946 FBN2P35556 2912 aa4.83□□□□□ -1.64
TTC28-208ENST00000612946 MXRA5Q9NR99 2828 aa4.83□□□□□ -1.64
TTC28-208ENST00000612946 PKD1L1Q8TDX9 2849 aa4.8□□□□□ -1.64
TTC28-208ENST00000612946 USP34Q70CQ2 3546 aa4.79□□□□□ -1.64
TTC28-208ENST00000612946 LAMA3Q16787 3333 aa4.79□□□□□ -1.64
TTC28-208ENST00000612946 BRCA2P51587 3418 aa4.78□□□□□ -1.64
TTC28-208ENST00000612946 KRTAP7-1Q8IUC3 87 aa4.76□□□□□ -1.65
TTC28-208ENST00000612946 VWFP04275 2813 aa4.74□□□□□ -1.65
TTC28-208ENST00000612946 KRTAP10-1P60331 282 aa4.74□□□□□ -1.65
TTC28-208ENST00000612946 BOD1L1Q8NFC6 3051 aa4.74□□□□□ -1.65
TTC28-208ENST00000612946 KRTAP13-2Q52LG2 175 aa4.72□□□□□ -1.65
TTC28-208ENST00000612946 XIRP2A4UGR9 3374 aa4.72□□□□□ -1.65
TTC28-208ENST00000612946 INE1O15225 51 aa4.68□□□□□ -1.66
TTC28-208ENST00000612946 FREM2Q5SZK8 3169 aa4.68□□□□□ -1.66
TTC28-208ENST00000612946 REV3LO60673 3130 aa4.66□□□□□ -1.66
TTC28-208ENST00000612946 SPTBN5Q9NRC6 3674 aaKnown RBP4.66□□□□□ -1.66
TTC28-208ENST00000612946 DNAH14Q0VDD8 3507 aa4.66□□□□□ -1.66
TTC28-208ENST00000612946 KRTAP10-2P60368 255 aa4.65□□□□□ -1.66
TTC28-208ENST00000612946 ADGRG4Q8IZF6 3080 aa4.65□□□□□ -1.67
TTC28-208ENST00000612946 COL6A3P12111 3177 aa4.65□□□□□ -1.67
TTC28-208ENST00000612946 KRTAP13-3Q3SY46 172 aa4.63□□□□□ -1.67
TTC28-208ENST00000612946 ATMQ13315 3056 aa4.63□□□□□ -1.67
TTC28-208ENST00000612946 DMXL1Q9Y485 3027 aa4.63□□□□□ -1.67
TTC28-208ENST00000612946 CDH23Q9H251 3354 aa4.62□□□□□ -1.67
TTC28-208ENST00000612946 TENM2Q9NT68 2774 aa4.62□□□□□ -1.67
TTC28-208ENST00000612946 CELSR1Q9NYQ6 3014 aa4.6□□□□□ -1.67
TTC28-208ENST00000612946 UNC80Q8N2C7 3258 aa4.6□□□□□ -1.67
TTC28-208ENST00000612946 CELSR3Q9NYQ7 3312 aa4.59□□□□□ -1.68
TTC28-208ENST00000612946 COL7A1Q02388 2944 aa4.59□□□□□ -1.68
TTC28-208ENST00000612946 ZFHX3Q15911 3703 aa4.58□□□□□ -1.68
TTC28-208ENST00000612946 KRTAP13-4Q3LI77 160 aa4.55□□□□□ -1.68
TTC28-208ENST00000612946 KRTAP10-8P60410 259 aa4.53□□□□□ -1.68
TTC28-208ENST00000612946 KRTAP21-3Q3LHN1 58 aa4.53□□□□□ -1.68
TTC28-208ENST00000612946 PRO2289Q9P1D8 64 aa4.51□□□□□ -1.69
TTC28-208ENST00000612946 VCANP13611 3396 aa4.5□□□□□ -1.69
TTC28-208ENST00000612946 SZT2Q5T011 3432 aa4.49□□□□□ -1.69
TTC28-208ENST00000612946 KRTAP15-1Q3LI76 137 aa4.48□□□□□ -1.69
TTC28-208ENST00000612946 XP32Q5T750 250 aa4.47□□□□□ -1.69
TTC28-208ENST00000612946 TPRXLQ17RH7 258 aa4.46□□□□□ -1.7
TTC28-208ENST00000612946 KRTAP1-4P0C5Y4 121 aa4.46□□□□□ -1.7
TTC28-208ENST00000612946 CFAP47Q6ZTR5 3102 aa4.44□□□□□ -1.7
TTC28-208ENST00000612946 WDFY3Q8IZQ1 3526 aa4.43□□□□□ -1.7
TTC28-208ENST00000612946 KRTAP12-2P59991 146 aa4.43□□□□□ -1.7
TTC28-208ENST00000612946 EYSQ5T1H1 3165 aa4.43□□□□□ -1.7
TTC28-208ENST00000612946 KRTAP12-1P59990 96 aa4.4□□□□□ -1.71
TTC28-208ENST00000612946 SPENQ96T58 3664 aaKnown RBP4.4□□□□□ -1.71
TTC28-208ENST00000612946 FBN1P35555 2871 aaKnown RBP4.39□□□□□ -1.71
TTC28-208ENST00000612946 MEGF8Q7Z7M0 2845 aa4.38□□□□□ -1.71
TTC28-208ENST00000612946 MYO15AQ9UKN7 3530 aa4.37□□□□□ -1.71
TTC28-208ENST00000612946 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
TTC28-208ENST00000612946 FBN3Q75N90 2809 aa4.35□□□□□ -1.71
TTC28-208ENST00000612946 NBPF19A0A087WUL8 3843 aa4.33□□□□□ -1.72
TTC28-208ENST00000612946 A0A1B0GVY2 172 aa4.31□□□□□ -1.72
TTC28-208ENST00000612946 LOC400499M0QZD8 3231 aa4.31□□□□□ -1.72
TTC28-208ENST00000612946 KRTAP10-10P60014 251 aa4.27□□□□□ -1.73
TTC28-208ENST00000612946 SPEGQ15772 3267 aa4.27□□□□□ -1.73
TTC28-208ENST00000612946 DMDP11532 3685 aa4.24□□□□□ -1.73
TTC28-208ENST00000612946 LAMA5O15230 3695 aa4.24□□□□□ -1.73
TTC28-208ENST00000612946 SMG1Q96Q15 3661 aaKnown RBP4.23□□□□□ -1.73
TTC28-208ENST00000612946 ALMS1Q8TCU4 4167 aa4.23□□□□□ -1.73
TTC28-208ENST00000612946 AKAP9Q99996 3911 aa4.22□□□□□ -1.73
TTC28-208ENST00000612946 VPS13CQ709C8 3753 aa4.22□□□□□ -1.73
TTC28-208ENST00000612946 KRTAP10-6P60371 365 aaPredicted RBP4.21□□□□□ -1.74
TTC28-208ENST00000612946 ZFHX4Q86UP3 3567 aa4.2□□□□□ -1.74
TTC28-208ENST00000612946 OTOGQ6ZRI0 2925 aa4.16□□□□□ -1.74
TTC28-208ENST00000612946 KRTAP3-1Q9BYR8 98 aa4.15□□□□□ -1.75
TTC28-208ENST00000612946 ASPMQ8IZT6 3477 aa4.11□□□□□ -1.75
TTC28-208ENST00000612946 RELNP78509 3460 aa4.1□□□□□ -1.75
TTC28-208ENST00000612946 TRRAPQ9Y4A5 3859 aa4.1□□□□□ -1.75
TTC28-208ENST00000612946 CSMD1Q96PZ7 3565 aa4.05□□□□□ -1.76
TTC28-208ENST00000612946 DCHS1Q96JQ0 3298 aa4.04□□□□□ -1.76
TTC28-208ENST00000612946 KRTAP3-2Q9BYR7 98 aa4.02□□□□□ -1.77
TTC28-208ENST00000612946 SVEP1Q4LDE5 3571 aa3.94□□□□□ -1.78
TTC28-208ENST00000612946 KRTAP10-12P60413 245 aa3.93□□□□□ -1.78
TTC28-208ENST00000612946 BSNQ9UPA5 3926 aa3.92□□□□□ -1.78
TTC28-208ENST00000612946 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
TTC28-208ENST00000612946 DNAH3Q8TD57 4116 aa3.9□□□□□ -1.79
TTC28-208ENST00000612946 KRTAP12-3P60328 96 aa3.87□□□□□ -1.79
TTC28-208ENST00000612946 LYSTQ99698 3801 aa3.82□□□□□ -1.8
TTC28-208ENST00000612946 CMYA5Q8N3K9 4069 aa3.82□□□□□ -1.8
TTC28-208ENST00000612946 KRTAP19-4Q3LI73 84 aa3.79□□□□□ -1.8
TTC28-208ENST00000612946 HECTD4Q9Y4D8 3996 aa3.78□□□□□ -1.8
TTC28-208ENST00000612946 DNAH1Q9P2D7 4330 aa3.78□□□□□ -1.8
TTC28-208ENST00000612946 CUBNO60494 3623 aa3.78□□□□□ -1.8
TTC28-208ENST00000612946 CRCT1Q9UGL9 99 aa3.74□□□□□ -1.81
TTC28-208ENST00000612946 MUC3AQ02505 3323 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms