RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 MYT1Q01538 1121 aa14.92□□□□□ -0.02
TTC28-208ENST00000612946 PELP1Q8IZL8 1130 aaKnown RBP14.77□□□□□ -0.05
TTC28-208ENST00000612946 CCER1Q8TC90 406 aaPredicted RBP13.88□□□□□ -0.19
TTC28-208ENST00000612946 CENPBP07199 599 aaPredicted RBP13.84□□□□□ -0.19
TTC28-208ENST00000612946 ZEB1P37275 1124 aaPredicted RBP13.77□□□□□ -0.21
TTC28-208ENST00000612946 TTBK1Q5TCY1 1321 aaPredicted RBP13.76□□□□□ -0.21
TTC28-208ENST00000612946 ERICH6Q7L0X2 663 aa13.66□□□□□ -0.22
TTC28-208ENST00000612946 YTHDC1Q96MU7 727 aaKnown RBP13.6□□□□□ -0.23
TTC28-208ENST00000612946 DCAF8L2P0C7V8 631 aa13.39□□□□□ -0.27
TTC28-208ENST00000612946 NEFLP07196 543 aa13.3□□□□□ -0.28
TTC28-208ENST00000612946 NISCHQ9Y2I1 1504 aa13.27□□□□□ -0.29
TTC28-208ENST00000612946 SUPT5HO00267 1087 aaKnown RBP13.16□□□□□ -0.3
TTC28-208ENST00000612946 APLP2Q06481 763 aa13.15□□□□□ -0.3
TTC28-208ENST00000612946 PCGF6Q9BYE7 350 aa13.14□□□□□ -0.31
TTC28-208ENST00000612946 HRCP23327 699 aa13.02□□□□□ -0.32
TTC28-208ENST00000612946 RTL5Q5HYW3 569 aaPredicted RBP12.94□□□□□ -0.34
TTC28-208ENST00000612946 DAXXQ9UER7 740 aaPredicted RBP12.94□□□□□ -0.34
TTC28-208ENST00000612946 MYT1LQ9UL68 1186 aa12.93□□□□□ -0.34
TTC28-208ENST00000612946 CLSPNQ9HAW4 1339 aa12.9□□□□□ -0.34
TTC28-208ENST00000612946 GLIPR1L2Q4G1C9 344 aa12.82□□□□□ -0.36
TTC28-208ENST00000612946 TRIM26Q12899 539 aaPredicted RBP12.82□□□□□ -0.36
TTC28-208ENST00000612946 FAM9AQ8IZU1 332 aaPredicted RBP12.73□□□□□ -0.37
TTC28-208ENST00000612946 SHROOM4Q9ULL8 1493 aa12.65□□□□□ -0.38
TTC28-208ENST00000612946 ZNF316A6NFI3 1004 aaPredicted RBP12.62□□□□□ -0.39
TTC28-208ENST00000612946 DIEXFQ68CQ4 756 aaKnown RBP12.49□□□□□ -0.41
TTC28-208ENST00000612946 TRIM41Q8WV44 630 aa12.45□□□□□ -0.42
TTC28-208ENST00000612946 CDK11AQ9UQ88 783 aaPredicted RBP12.44□□□□□ -0.42
TTC28-208ENST00000612946 GTF3C3Q9Y5Q9 886 aa12.41□□□□□ -0.42
TTC28-208ENST00000612946 ACIN1Q9UKV3 1341 aaKnown RBP12.4□□□□□ -0.42
TTC28-208ENST00000612946 EHMT2Q96KQ7 1210 aa12.38□□□□□ -0.43
TTC28-208ENST00000612946 ANP32AP39687 249 aaKnown RBP12.36□□□□□ -0.43
TTC28-208ENST00000612946 ANP32BQ92688 251 aaKnown RBP12.28□□□□□ -0.44
TTC28-208ENST00000612946 UBTFP17480 764 aaKnown RBP12.23□□□□□ -0.45
TTC28-208ENST00000612946 EIF5BO60841 1220 aaKnown RBP12.22□□□□□ -0.45
TTC28-208ENST00000612946 DCAF1Q9Y4B6 1507 aa12.18□□□□□ -0.46
TTC28-208ENST00000612946 TNNT2P45379 298 aaPredicted RBP12.17□□□□□ -0.46
TTC28-208ENST00000612946 RANGAP1P46060 587 aaPredicted RBP12.15□□□□□ -0.46
TTC28-208ENST00000612946 ANP32EQ9BTT0 268 aa12.13□□□□□ -0.47
TTC28-208ENST00000612946 CCDC180Q9P1Z9 1646 aa12.13□□□□□ -0.47
TTC28-208ENST00000612946 NCLP19338 710 aaKnown RBP12.12□□□□□ -0.47
TTC28-208ENST00000612946 ANP32CO43423 234 aa12.11□□□□□ -0.47
TTC28-208ENST00000612946 PPARGC1BQ86YN6 1023 aaKnown RBP12.11□□□□□ -0.47
TTC28-208ENST00000612946 TRIM44Q96DX7 344 aaPredicted RBP12.04□□□□□ -0.48
TTC28-208ENST00000612946 CHIC1Q5VXU3 224 aa12.01□□□□□ -0.49
TTC28-208ENST00000612946 ERICH6BQ5W0A0 696 aa12.01□□□□□ -0.49
TTC28-208ENST00000612946 UPF2Q9HAU5 1272 aaKnown RBP11.98□□□□□ -0.49
TTC28-208ENST00000612946 ZBTB47Q9UFB7 747 aaPredicted RBP11.96□□□□□ -0.5
TTC28-208ENST00000612946 DDRGK1Q96HY6 314 aa11.94□□□□□ -0.5
TTC28-208ENST00000612946 BCL11AQ9H165 835 aa11.94□□□□□ -0.5
TTC28-208ENST00000612946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
TTC28-208ENST00000612946 BCANQ96GW7 911 aa11.93□□□□□ -0.5
TTC28-208ENST00000612946 SCAF1Q9H7N4 1312 aaKnown RBP11.92□□□□□ -0.5
TTC28-208ENST00000612946 ATP1B4Q9UN42 357 aaPredicted RBP11.92□□□□□ -0.5
TTC28-208ENST00000612946 CDK11BP21127 795 aaKnown RBP11.87□□□□□ -0.51
TTC28-208ENST00000612946 PPM1GO15355 546 aaPredicted RBP11.84□□□□□ -0.51
TTC28-208ENST00000612946 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
TTC28-208ENST00000612946 NEFMP07197 916 aa11.83□□□□□ -0.52
TTC28-208ENST00000612946 HSP90AA1P07900 732 aaKnown RBP11.82□□□□□ -0.52
TTC28-208ENST00000612946 BECN1Q14457 450 aa11.82□□□□□ -0.52
TTC28-208ENST00000612946 CANXP27824 592 aaKnown RBP11.8□□□□□ -0.52
TTC28-208ENST00000612946 FKBP8Q14318 412 aa11.79□□□□□ -0.52
TTC28-208ENST00000612946 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
TTC28-208ENST00000612946 POLR3GLQ9BT43 218 aa11.77□□□□□ -0.53
TTC28-208ENST00000612946 NBR1Q14596 966 aa11.75□□□□□ -0.53
TTC28-208ENST00000612946 ARID4BQ4LE39 1312 aaPredicted RBP11.75□□□□□ -0.53
TTC28-208ENST00000612946 GOLGA6L22H0YM25 854 aa11.74□□□□□ -0.53
TTC28-208ENST00000612946 LOC105371045A0A1W2PR82 267 aa11.72□□□□□ -0.53
TTC28-208ENST00000612946 NPM2Q86SE8 214 aaKnown RBP11.72□□□□□ -0.53
TTC28-208ENST00000612946 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.71□□□□□ -0.53
TTC28-208ENST00000612946 CCDC136Q96JN2 1154 aa11.71□□□□□ -0.53
TTC28-208ENST00000612946 L1TD1Q5T7N2 865 aaKnown RBP11.71□□□□□ -0.54
TTC28-208ENST00000612946 NOP58Q9Y2X3 529 aaKnown RBP11.66□□□□□ -0.54
TTC28-208ENST00000612946 NAP1L5Q96NT1 182 aaPredicted RBP11.66□□□□□ -0.54
TTC28-208ENST00000612946 ITGAEP38570 1179 aa11.65□□□□□ -0.54
TTC28-208ENST00000612946 ZNF326Q5BKZ1 582 aaKnown RBP11.65□□□□□ -0.55
TTC28-208ENST00000612946 RSPH6AQ9H0K4 717 aa11.64□□□□□ -0.55
TTC28-208ENST00000612946 CHAF1AQ13111 956 aaPredicted RBP11.62□□□□□ -0.55
TTC28-208ENST00000612946 PTMSP20962 102 aa11.62□□□□□ -0.55
TTC28-208ENST00000612946 HNRNPUQ00839 825 aaKnown RBP eCLIP11.59□□□□□ -0.55
TTC28-208ENST00000612946 TONSLQ96HA7 1378 aa11.58□□□□□ -0.56
TTC28-208ENST00000612946 DEKP35659 375 aaKnown RBP11.56□□□□□ -0.56
TTC28-208ENST00000612946 GOLGA6L6A8MZA4 724 aa11.55□□□□□ -0.56
TTC28-208ENST00000612946 NRDCO43847 1150 aa11.54□□□□□ -0.56
TTC28-208ENST00000612946 USP35Q9P2H5 1018 aa11.54□□□□□ -0.56
TTC28-208ENST00000612946 FAM50AQ14320 339 aaKnown RBP11.52□□□□□ -0.56
TTC28-208ENST00000612946 PTMAP06454 111 aaKnown RBP11.52□□□□□ -0.56
TTC28-208ENST00000612946 PPP4R2Q9NY27 417 aa11.51□□□□□ -0.57
TTC28-208ENST00000612946 MSNP26038 577 aaKnown RBP11.49□□□□□ -0.57
TTC28-208ENST00000612946 DNTTIP2Q5QJE6 756 aaKnown RBP11.49□□□□□ -0.57
TTC28-208ENST00000612946 SLC4A1APQ9BWU0 796 aaKnown RBP11.48□□□□□ -0.57
TTC28-208ENST00000612946 SLC24A1O60721 1099 aa11.47□□□□□ -0.57
TTC28-208ENST00000612946 PNNQ9H307 717 aaKnown RBP11.47□□□□□ -0.57
TTC28-208ENST00000612946 TRIM52Q96A61 297 aa11.46□□□□□ -0.57
TTC28-208ENST00000612946 MYH16Q9H6N6 1097 aa11.46□□□□□ -0.57
TTC28-208ENST00000612946 SUPT16HQ9Y5B9 1047 aaKnown RBP11.44□□□□□ -0.58
TTC28-208ENST00000612946 CFAP44Q96MT7 982 aa11.43□□□□□ -0.58
TTC28-208ENST00000612946 CNGB1Q14028 1251 aaPredicted RBP11.43□□□□□ -0.58
TTC28-208ENST00000612946 HSP90AA2PQ14568 343 aaPredicted RBP11.43□□□□□ -0.58
TTC28-208ENST00000612946 LAS1LQ9Y4W2 734 aaKnown RBP11.43□□□□□ -0.58
TTC28-208ENST00000612946 MIER1Q8N108 512 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms