RNA–Protein interactions for RNA: YLR240W

VPS34, Transcript of Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate, yeast

Gene VPS34, Length 2,628 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS34	YLR240W	TRP5	P00931	707 aa	Known RBP	4.12	□□□□□ -1.75
VPS34	YLR240W	IOC2	Q12072	812 aa		4.11	□□□□□ -1.75
VPS34	YLR240W	CKB1	P43639	278 aa		4.11	□□□□□ -1.75
VPS34	YLR240W	NST1	P53935	1240 aa		4.1	□□□□□ -1.75
VPS34	YLR240W	SOL3	P38858	249 aa		4.1	□□□□□ -1.75
VPS34	YLR240W	YGR273C	P53329	174 aa		4.1	□□□□□ -1.75
VPS34	YLR240W	YEL023C	P39992	682 aa		4.09	□□□□□ -1.75
VPS34	YLR240W	LDB19	Q12502	818 aa		4.09	□□□□□ -1.75
VPS34	YLR240W	JIP4	Q03361	876 aa		4.08	□□□□□ -1.76
VPS34	YLR240W	AI4	P03878	556 aa		4.07	□□□□□ -1.76
VPS34	YLR240W	PTC4	P38089	393 aa		4.07	□□□□□ -1.76
VPS34	YLR240W	REF2	P42073	533 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS34	YLR240W	DAN4	P47179	1161 aa		4.07	□□□□□ -1.76
VPS34	YLR240W	YNL035C	P53962	389 aa	Known RBP	4.07	□□□□□ -1.76
VPS34	YLR240W	FKH1	P40466	484 aa		4.07	□□□□□ -1.76
VPS34	YLR240W	MPH3	P0CE00	602 aa		4.06	□□□□□ -1.76
VPS34	YLR240W	RTG1	P32607	177 aa		4.06	□□□□□ -1.76
VPS34	YLR240W	SEC61	P32915	480 aa		4.05	□□□□□ -1.76
VPS34	YLR240W	UBP14	P38237	781 aa	Known RBP	4.05	□□□□□ -1.76
VPS34	YLR240W	VHR2	P40041	505 aa		4.05	□□□□□ -1.76
VPS34	YLR240W	YLR326W	Q06170	240 aa	Known RBP	4.05	□□□□□ -1.76
VPS34	YLR240W	SIS1	P25294	352 aa	Known RBP	4.05	□□□□□ -1.76
VPS34	YLR240W	ILV3	P39522	585 aa	Known RBP	4.05	□□□□□ -1.76
VPS34	YLR240W	PBS2	P08018	668 aa		4.04	□□□□□ -1.76
VPS34	YLR240W	KEX1	P09620	729 aa		4.04	□□□□□ -1.76
VPS34	YLR240W	MAK21	Q12176	1025 aa	Known RBP	4.04	□□□□□ -1.76
VPS34	YLR240W	DSF2	P38213	736 aa		4.04	□□□□□ -1.76
VPS34	YLR240W	YDR090C	Q03193	310 aa		4.03	□□□□□ -1.76
VPS34	YLR240W	AIR2	Q12476	344 aa	Known RBP	4.03	□□□□□ -1.76
VPS34	YLR240W	COX6	P00427	148 aa		4.02	□□□□□ -1.77
VPS34	YLR240W	LEU3	P08638	886 aa		4.01	□□□□□ -1.77
VPS34	YLR240W	RAD54	P32863	898 aa		4.01	□□□□□ -1.77
VPS34	YLR240W	SPB4	P25808	606 aa	Predicted RBP	4.01	□□□□□ -1.77
VPS34	YLR240W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
VPS34	YLR240W	NCR1	Q12200	1170 aa		4.01	□□□□□ -1.77
VPS34	YLR240W	TFG1	P41895	735 aa	Predicted RBP	4	□□□□□ -1.77
VPS34	YLR240W	MAM3	Q12296	706 aa		4	□□□□□ -1.77
VPS34	YLR240W	SLI15	P38283	698 aa		3.99	□□□□□ -1.77
VPS34	YLR240W	KIC1	P38692	1080 aa		3.99	□□□□□ -1.77
VPS34	YLR240W	PML39	Q03760	334 aa		3.99	□□□□□ -1.77
VPS34	YLR240W	YDL129W	Q07555	291 aa		3.99	□□□□□ -1.77
VPS34	YLR240W	IES2	P40154	320 aa		3.97	□□□□□ -1.77
VPS34	YLR240W	MID1	P41821	548 aa		3.96	□□□□□ -1.77
VPS34	YLR240W	ORC6	P38826	435 aa		3.95	□□□□□ -1.78
VPS34	YLR240W	SAP30	P38429	201 aa		3.95	□□□□□ -1.78
VPS34	YLR240W	YJL171C	P46992	396 aa		3.95	□□□□□ -1.78
VPS34	YLR240W	NUP42	P49686	430 aa	Known RBP	3.95	□□□□□ -1.78
VPS34	YLR240W	MPC54	Q08550	464 aa		3.95	□□□□□ -1.78
VPS34	YLR240W	BMT6	Q12291	365 aa		3.95	□□□□□ -1.78
VPS34	YLR240W	RPP1B	P10622	106 aa	Known RBP	3.94	□□□□□ -1.78
VPS34	YLR240W	PEX29	Q03370	554 aa		3.94	□□□□□ -1.78
VPS34	YLR240W	GAP1	P19145	602 aa	Predicted RBP	3.93	□□□□□ -1.78
VPS34	YLR240W	DPL1	Q05567	589 aa		3.93	□□□□□ -1.78
VPS34	YLR240W	CDC73	Q06697	393 aa		3.93	□□□□□ -1.78
VPS34	YLR240W	PSE1	P32337	1089 aa	Known RBP	3.92	□□□□□ -1.78
VPS34	YLR240W	YNR021W	P53723	404 aa	Known RBP	3.92	□□□□□ -1.78
VPS34	YLR240W	DIT2	P21595	489 aa		3.91	□□□□□ -1.78
VPS34	YLR240W	ARH1	P48360	493 aa		3.91	□□□□□ -1.78
VPS34	YLR240W	CSC1	Q06538	782 aa		3.91	□□□□□ -1.78
VPS34	YLR240W	YDR344C	Q05510	147 aa		3.91	□□□□□ -1.78
VPS34	YLR240W	NMA111	P53920	997 aa		3.9	□□□□□ -1.79
VPS34	YLR240W	HAP5	Q02516	242 aa		3.9	□□□□□ -1.79
VPS34	YLR240W	TFB4	Q12004	338 aa		3.9	□□□□□ -1.79
VPS34	YLR240W	RPN1	P38764	993 aa	Known RBP	3.89	□□□□□ -1.79
VPS34	YLR240W	MVP1	P40959	511 aa	Known RBP	3.89	□□□□□ -1.79
VPS34	YLR240W	ISU2	Q12056	156 aa		3.89	□□□□□ -1.79
VPS34	YLR240W	RGR1	P19263	1082 aa		3.89	□□□□□ -1.79
VPS34	YLR240W	PRE3	P38624	215 aa		3.89	□□□□□ -1.79
VPS34	YLR240W	GLC3	P32775	704 aa		3.88	□□□□□ -1.79
VPS34	YLR240W	PEX21	P50091	288 aa		3.88	□□□□□ -1.79
VPS34	YLR240W	BNI4	P53858	892 aa		3.88	□□□□□ -1.79
VPS34	YLR240W	ELP4	Q02884	456 aa	Known RBP	3.88	□□□□□ -1.79
VPS34	YLR240W	AIM7	Q12156	149 aa		3.88	□□□□□ -1.79
VPS34	YLR240W	CHL1	P22516	861 aa	Predicted RBP	3.87	□□□□□ -1.79
VPS34	YLR240W	LEO1	P38439	464 aa		3.87	□□□□□ -1.79
VPS34	YLR240W	CLB5	P30283	435 aa		3.87	□□□□□ -1.79
VPS34	YLR240W	SPT23	P35210	1082 aa		3.86	□□□□□ -1.79
VPS34	YLR240W	TUM1	Q08686	304 aa	Known RBP	3.85	□□□□□ -1.79
VPS34	YLR240W	ATF2	P53296	535 aa		3.84	□□□□□ -1.79
VPS34	YLR240W	YRR1	Q12172	810 aa		3.84	□□□□□ -1.79
VPS34	YLR240W	TEA1	P47988	759 aa		3.84	□□□□□ -1.8
VPS34	YLR240W	YPR109W	Q06104	294 aa		3.84	□□□□□ -1.8
VPS34	YLR240W	PTC2	P39966	464 aa	Known RBP	3.83	□□□□□ -1.8
VPS34	YLR240W	PDR1	P12383	1068 aa		3.83	□□□□□ -1.8
VPS34	YLR240W	RAM1	P22007	431 aa		3.83	□□□□□ -1.8
VPS34	YLR240W	KIN1	P13185	1064 aa		3.82	□□□□□ -1.8
VPS34	YLR240W	YML082W	Q04533	649 aa	Known RBP	3.82	□□□□□ -1.8
VPS34	YLR240W	NUD1	P32336	851 aa		3.81	□□□□□ -1.8
VPS34	YLR240W	NIS1	P53939	407 aa		3.8	□□□□□ -1.8
VPS34	YLR240W	YPR015C	Q12531	247 aa		3.8	□□□□□ -1.8
VPS34	YLR240W	STR2	P47164	639 aa		3.8	□□□□□ -1.8
VPS34	YLR240W	SIT4	P20604	311 aa		3.79	□□□□□ -1.8
VPS34	YLR240W	BCK2	P33306	851 aa		3.78	□□□□□ -1.8
VPS34	YLR240W	NPL4	P33755	580 aa		3.78	□□□□□ -1.8
VPS34	YLR240W	ISM1	P48526	1002 aa		3.78	□□□□□ -1.8
VPS34	YLR240W	RTF1	P53064	558 aa		3.78	□□□□□ -1.8
VPS34	YLR240W	FPK1	P53739	893 aa		3.77	□□□□□ -1.81
VPS34	YLR240W	HST2	P53686	357 aa		3.77	□□□□□ -1.81
VPS34	YLR240W	YMR196W	Q04336	1088 aa		3.77	□□□□□ -1.81
VPS34	YLR240W	VRP1	P37370	817 aa		3.76	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms