RNA–Protein interactions for RNA: YLR240W

VPS34, Transcript of Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate, yeast

Gene VPS34, Length 2,628 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS34	YLR240W	MTC1	P47018	478 aa	Known RBP	6.88	□□□□□ -1.31
VPS34	YLR240W	DRS1	P32892	752 aa	Known RBP	6.76	□□□□□ -1.33
VPS34	YLR240W	DIP2	Q12220	943 aa	Predicted RBP	5.8	□□□□□ -1.48
VPS34	YLR240W	BFR2	Q06631	534 aa	Known RBP	5.79	□□□□□ -1.48
VPS34	YLR240W	FAP1	P53971	965 aa		5.76	□□□□□ -1.49
VPS34	YLR240W	AVT3	P36062	692 aa		5.71	□□□□□ -1.5
VPS34	YLR240W	ISW2	Q08773	1120 aa		5.62	□□□□□ -1.51
VPS34	YLR240W	PRI1	P10363	409 aa		5.6	□□□□□ -1.51
VPS34	YLR240W	RPG1	P38249	964 aa	Known RBP	5.53	□□□□□ -1.52
VPS34	YLR240W	RSE1	Q04693	1361 aa	Known RBP	5.51	□□□□□ -1.53
VPS34	YLR240W	AAD16	Q02895	342 aa		5.5	□□□□□ -1.53
VPS34	YLR240W	PRY3	P47033	881 aa		5.4	□□□□□ -1.55
VPS34	YLR240W	TFA1	P36100	482 aa		5.38	□□□□□ -1.55
VPS34	YLR240W	RPL17A	P05740	184 aa	Known RBP	5.3	□□□□□ -1.56
VPS34	YLR240W	RPL17B	P46990	184 aa	Known RBP	5.3	□□□□□ -1.56
VPS34	YLR240W	TSR3	Q12094	313 aa	Known RBP	5.28	□□□□□ -1.56
VPS34	YLR240W	REB1	P21538	810 aa		5.26	□□□□□ -1.57
VPS34	YLR240W	SPT21	P35209	758 aa		5.13	□□□□□ -1.59
VPS34	YLR240W	YCK3	P39962	524 aa		5.12	□□□□□ -1.59
VPS34	YLR240W	HAA1	Q12753	694 aa	Known RBP	5.1	□□□□□ -1.59
VPS34	YLR240W	MRPL32	P25348	183 aa		5.08	□□□□□ -1.6
VPS34	YLR240W	RIM101	P33400	625 aa		5.02	□□□□□ -1.61
VPS34	YLR240W	YKR023W	P36119	530 aa	Known RBP	4.98	□□□□□ -1.61
VPS34	YLR240W	CDC27	P38042	758 aa		4.9	□□□□□ -1.62
VPS34	YLR240W	TFC8	Q12308	588 aa		4.88	□□□□□ -1.63
VPS34	YLR240W	HO	P09932	586 aa		4.86	□□□□□ -1.63
VPS34	YLR240W	OXP1	P28273	1286 aa		4.85	□□□□□ -1.63
VPS34	YLR240W	DCD1	P06773	312 aa		4.83	□□□□□ -1.64
VPS34	YLR240W	YGL015C	P33199	130 aa		4.78	□□□□□ -1.64
VPS34	YLR240W	YIL055C	P40523	627 aa	Known RBP	4.77	□□□□□ -1.65
VPS34	YLR240W	PTP3	P40048	928 aa		4.76	□□□□□ -1.65
VPS34	YLR240W	UBP10	P53874	792 aa	Predicted RBP	4.75	□□□□□ -1.65
VPS34	YLR240W	YAH1	Q12184	172 aa	Known RBP	4.75	□□□□□ -1.65
VPS34	YLR240W	SSP1	P38871	571 aa		4.73	□□□□□ -1.65
VPS34	YLR240W	BCH2	P36122	765 aa		4.73	□□□□□ -1.65
VPS34	YLR240W	MAP2	P38174	421 aa	Known RBP	4.71	□□□□□ -1.66
VPS34	YLR240W	RSM7	P47150	247 aa		4.71	□□□□□ -1.66
VPS34	YLR240W	YLR271W	Q06152	274 aa		4.7	□□□□□ -1.66
VPS34	YLR240W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected
VPS34	YLR240W	SCY1	P53009	804 aa		4.67	□□□□□ -1.66
VPS34	YLR240W	AI2	P03876	854 aa		4.64	□□□□□ -1.67
VPS34	YLR240W	EPS1	P40557	701 aa		4.64	□□□□□ -1.67
VPS34	YLR240W	BBC1	P47068	1157 aa		4.63	□□□□□ -1.67
VPS34	YLR240W	BDF1	P35817	686 aa		4.61	□□□□□ -1.67
VPS34	YLR240W	PSD2	P53037	1138 aa	Known RBP	4.61	□□□□□ -1.67
VPS34	YLR240W	SLX5	P32828	619 aa	Known RBP	4.6	□□□□□ -1.67
VPS34	YLR240W	MGA2	P40578	1113 aa		4.59	□□□□□ -1.67
VPS34	YLR240W	CST9	Q06032	482 aa		4.55	□□□□□ -1.68
VPS34	YLR240W	TIF4632	P39936	914 aa	Known RBP	4.53	□□□□□ -1.68
VPS34	YLR240W	TGL3	P40308	642 aa		4.5	□□□□□ -1.69
VPS34	YLR240W	MRM1	P25270	412 aa		4.49	□□□□□ -1.69
VPS34	YLR240W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.45	□□□□□ -1.7	not detected
VPS34	YLR240W	RTG3	P38165	486 aa		4.42	□□□□□ -1.7
VPS34	YLR240W	RQC2	Q12532	1038 aa	Known RBP	4.42	□□□□□ -1.7
VPS34	YLR240W	RCR1	P38212	213 aa		4.41	□□□□□ -1.7
VPS34	YLR240W	YAP5	P40574	245 aa		4.39	□□□□□ -1.71
VPS34	YLR240W	VPS29	P38759	282 aa		4.38	□□□□□ -1.71
VPS34	YLR240W	RAM2	P29703	316 aa		4.37	□□□□□ -1.71
VPS34	YLR240W	MST1	P07236	462 aa		4.37	□□□□□ -1.71
VPS34	YLR240W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
VPS34	YLR240W	YOR238W	Q08634	303 aa		4.36	□□□□□ -1.71
VPS34	YLR240W	DMA1	P38823	416 aa		4.35	□□□□□ -1.71
VPS34	YLR240W	STS1	P38637	319 aa		4.34	□□□□□ -1.72
VPS34	YLR240W	MAK11	P20484	414 aa	Known RBP	4.33	□□□□□ -1.72
VPS34	YLR240W	DBP1	P24784	617 aa	Known RBP	4.33	□□□□□ -1.72
VPS34	YLR240W	YFR006W	P43590	535 aa		4.3	□□□□□ -1.72
VPS34	YLR240W	PIB1	Q06651	286 aa		4.3	□□□□□ -1.72
VPS34	YLR240W	VMA1	P17255	1071 aa	Known RBP	4.27	□□□□□ -1.73
VPS34	YLR240W	GTT3	P39996	337 aa		4.27	□□□□□ -1.73
VPS34	YLR240W	COQ8	P27697	501 aa		4.26	□□□□□ -1.73
VPS34	YLR240W	UBP9	P39967	754 aa		4.25	□□□□□ -1.73
VPS34	YLR240W	SET1	P38827	1080 aa	Known RBP	4.25	□□□□□ -1.73
VPS34	YLR240W	EDS1	P38073	919 aa		4.24	□□□□□ -1.73
VPS34	YLR240W	SAM3	Q08986	587 aa		4.24	□□□□□ -1.73
VPS34	YLR240W	BUD31	P25337	157 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS34	YLR240W	MIF2	P35201	549 aa		4.24	□□□□□ -1.73
VPS34	YLR240W	NOP53	Q12080	455 aa	Known RBP	4.23	□□□□□ -1.73
VPS34	YLR240W	YBL029C-A	Q3E756	94 aa		4.23	□□□□□ -1.73
VPS34	YLR240W	PTC3	P34221	468 aa	Known RBP	4.21	□□□□□ -1.74
VPS34	YLR240W	YOL036W	Q08206	761 aa		4.21	□□□□□ -1.74
VPS34	YLR240W	SAS10	Q12136	610 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS34	YLR240W	MSB4	Q12317	492 aa		4.21	□□□□□ -1.74
VPS34	YLR240W	WSC3	Q12215	556 aa		4.2	□□□□□ -1.74
VPS34	YLR240W	IFH1	P39520	1085 aa		4.2	□□□□□ -1.74
VPS34	YLR240W	VNX1	P42839	908 aa		4.2	□□□□□ -1.74
VPS34	YLR240W	YPR148C	Q06523	435 aa		4.2	□□□□□ -1.74
VPS34	YLR240W	ABP1	P15891	592 aa	Known RBP	4.19	□□□□□ -1.74
VPS34	YLR240W	SET4	P42948	560 aa		4.18	□□□□□ -1.74
VPS34	YLR240W	GRE2	Q12068	342 aa	Known RBP	4.18	□□□□□ -1.74
VPS34	YLR240W	GYP5	Q12344	894 aa		4.18	□□□□□ -1.74
VPS34	YLR240W	GUT1	P32190	709 aa		4.16	□□□□□ -1.74
VPS34	YLR240W	ATH1	P48016	1211 aa		4.16	□□□□□ -1.74
VPS34	YLR240W	SPP1	Q03012	353 aa		4.16	□□□□□ -1.74
VPS34	YLR240W	EAP1	P36041	632 aa	Known RBP	4.16	□□□□□ -1.74
VPS34	YLR240W	TIF11	P38912	153 aa	Known RBP	4.16	□□□□□ -1.74
VPS34	YLR240W	HTA1	P04911	132 aa	Known RBP	4.13	□□□□□ -1.75
VPS34	YLR240W	HTA2	P04912	132 aa		4.13	□□□□□ -1.75
VPS34	YLR240W	VPS70	P47161	811 aa		4.13	□□□□□ -1.75
VPS34	YLR240W	DCW1	P36091	449 aa		4.12	□□□□□ -1.75
VPS34	YLR240W	ULI1	P43604	169 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms