RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MAGI1Q96QZ7 1491 aaPredicted RBP26.46■■□□□ 1.83
CLN3-252ENST00000636907 PPARGC1BQ86YN6 1023 aaKnown RBP26.41■■□□□ 1.82
CLN3-252ENST00000636907 GRIN2AQ12879 1464 aa26.37■■□□□ 1.81
CLN3-252ENST00000636907 SYNJ2O15056 1496 aa26.37■■□□□ 1.81
CLN3-252ENST00000636907 PCGF6Q9BYE7 350 aa26.36■■□□□ 1.81
CLN3-252ENST00000636907 EFCAB5A4FU69 1503 aa26.35■■□□□ 1.81
CLN3-252ENST00000636907 TRIM26Q12899 539 aaPredicted RBP26.35■■□□□ 1.81
CLN3-252ENST00000636907 IQGAP2Q13576 1575 aa26.29■■□□□ 1.8
CLN3-252ENST00000636907 CHMP7Q8WUX9 453 aaPredicted RBP26.29■■□□□ 1.8
CLN3-252ENST00000636907 P3H3Q8IVL6 736 aa26.28■■□□□ 1.8
CLN3-252ENST00000636907 SAMD9Q5K651 1589 aa26.28■■□□□ 1.8
CLN3-252ENST00000636907 FHOD3Q2V2M9 1422 aa26.27■■□□□ 1.8
CLN3-252ENST00000636907 FBLN2P98095 1184 aa26.24■■□□□ 1.79
CLN3-252ENST00000636907 KIAA0586Q9BVV6 1533 aa26.23■■□□□ 1.79
CLN3-252ENST00000636907 APLP2Q06481 763 aa26.22■■□□□ 1.79
CLN3-252ENST00000636907 CEP170Q5SW79 1584 aa26.22■■□□□ 1.79
CLN3-252ENST00000636907 TTBK1Q5TCY1 1321 aaPredicted RBP26.21■■□□□ 1.79
CLN3-252ENST00000636907 NUP160Q12769 1436 aa26.18■■□□□ 1.78
CLN3-252ENST00000636907 UGGT2Q9NYU1 1516 aa26.17■■□□□ 1.78
CLN3-252ENST00000636907 PCF11O94913 1555 aaKnown RBP26.14■■□□□ 1.78
CLN3-252ENST00000636907 FMN1Q68DA7 1419 aa26.11■■□□□ 1.77
CLN3-252ENST00000636907 CHD1O14646 1710 aa26.1■■□□□ 1.77
CLN3-252ENST00000636907 CASKIN1Q8WXD9 1431 aa26.08■■□□□ 1.77
CLN3-252ENST00000636907 FYCO1Q9BQS8 1478 aa26.06■■□□□ 1.76
CLN3-252ENST00000636907 DISP1Q96F81 1524 aa26.05■■□□□ 1.76
CLN3-252ENST00000636907 MAP3K1Q13233 1512 aa26.04■■□□□ 1.76
CLN3-252ENST00000636907 KIAA0556O60303 1618 aa26.04■■□□□ 1.76
CLN3-252ENST00000636907 TIAM1Q13009 1591 aa26.03■■□□□ 1.76
CLN3-252ENST00000636907 KANK4Q5T7N3 995 aaPredicted RBP26.03■■□□□ 1.76
CLN3-252ENST00000636907 ATP1B4Q9UN42 357 aaPredicted RBP25.99■■□□□ 1.75
CLN3-252ENST00000636907 CFAP43Q8NDM7 1665 aa25.99■■□□□ 1.75
CLN3-252ENST00000636907 JPH4Q96JJ6 628 aa25.96■■□□□ 1.75
CLN3-252ENST00000636907 LRRC9Q6ZRR7 1453 aa25.91■■□□□ 1.74
CLN3-252ENST00000636907 LRRIQ1Q96JM4 1722 aa25.9■■□□□ 1.74
CLN3-252ENST00000636907 CARMIL2Q6F5E8 1435 aa25.89■■□□□ 1.74
CLN3-252ENST00000636907 HECW1Q76N89 1606 aa25.86■■□□□ 1.73
CLN3-252ENST00000636907 SHROOM2Q13796 1616 aa25.82■■□□□ 1.72
CLN3-252ENST00000636907 PRG4Q92954 1404 aaPredicted RBP25.81■■□□□ 1.72
CLN3-252ENST00000636907 CCDC18Q5T9S5 1454 aa25.8■■□□□ 1.72
CLN3-252ENST00000636907 CLASP1Q7Z460 1538 aa25.79■■□□□ 1.72
CLN3-252ENST00000636907 RAPGEF6Q8TEU7 1601 aa25.78■■□□□ 1.72
CLN3-252ENST00000636907 EPRSP07814 1512 aaKnown RBP25.77■■□□□ 1.72
CLN3-252ENST00000636907 NUP153P49790 1475 aaKnown RBP25.73■■□□□ 1.71
CLN3-252ENST00000636907 RRBP1Q9P2E9 1410 aaKnown RBP25.72■■□□□ 1.71
CLN3-252ENST00000636907 CDK13Q14004 1512 aaKnown RBP25.72■■□□□ 1.71
CLN3-252ENST00000636907 PLB1Q6P1J6 1458 aa25.72■■□□□ 1.71
CLN3-252ENST00000636907 MTUS2Q5JR59 1369 aa25.71■■□□□ 1.71
CLN3-252ENST00000636907 MAGI3Q5TCQ9 1506 aa25.69■■□□□ 1.7
CLN3-252ENST00000636907 EHBP1L1Q8N3D4 1523 aa25.69■■□□□ 1.7
CLN3-252ENST00000636907 PHLDB1Q86UU1 1377 aa25.69■■□□□ 1.7
CLN3-252ENST00000636907 ERCC6L2Q5T890 1561 aa25.67■■□□□ 1.7
CLN3-252ENST00000636907 ARID3CA6NKF2 412 aa25.67■■□□□ 1.7
CLN3-252ENST00000636907 ABCA8O94911 1581 aa25.66■■□□□ 1.7
CLN3-252ENST00000636907 PTPRGP23470 1445 aa25.64■■□□□ 1.7
CLN3-252ENST00000636907 CCNB3Q8WWL7 1395 aa25.64■■□□□ 1.69
CLN3-252ENST00000636907 SUPT6HQ7KZ85 1726 aaKnown RBP25.62■■□□□ 1.69
CLN3-252ENST00000636907 HNRNPUL2Q1KMD3 747 aaKnown RBP25.6■■□□□ 1.69
CLN3-252ENST00000636907 NCOA2Q15596 1464 aa25.6■■□□□ 1.69
CLN3-252ENST00000636907 HRCP23327 699 aa25.57■■□□□ 1.68
CLN3-252ENST00000636907 ARHGEF11O15085 1522 aa25.56■■□□□ 1.68
CLN3-252ENST00000636907 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.54■■□□□ 1.68
CLN3-252ENST00000636907 OSCARQ8IYS5 282 aa25.52■■□□□ 1.68
CLN3-252ENST00000636907 UACAQ9BZF9 1416 aa25.51■■□□□ 1.67
CLN3-252ENST00000636907 CDK11AQ9UQ88 783 aaPredicted RBP25.5■■□□□ 1.67
CLN3-252ENST00000636907 ATP10BO94823 1461 aa25.5■■□□□ 1.67
CLN3-252ENST00000636907 FGD6Q6ZV73 1430 aa25.49■■□□□ 1.67
CLN3-252ENST00000636907 MYOM3Q5VTT5 1437 aa25.49■■□□□ 1.67
CLN3-252ENST00000636907 TROQ12816 1431 aaPredicted RBP25.46■■□□□ 1.67
CLN3-252ENST00000636907 FAM50AQ14320 339 aaKnown RBP25.45■■□□□ 1.66
CLN3-252ENST00000636907 ABCC2Q92887 1545 aa25.44■■□□□ 1.66
CLN3-252ENST00000636907 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.42■■□□□ 1.66
CLN3-252ENST00000636907 ITGAEP38570 1179 aa25.4■■□□□ 1.66
CLN3-252ENST00000636907 ADCY10Q96PN6 1610 aa25.39■■□□□ 1.66
CLN3-252ENST00000636907 KIF14Q15058 1648 aa25.37■■□□□ 1.65
CLN3-252ENST00000636907 PTPN23Q9H3S7 1636 aa25.37■■□□□ 1.65
CLN3-252ENST00000636907 UHRF1BP1LA0JNW5 1464 aa25.36■■□□□ 1.65
CLN3-252ENST00000636907 PLEKHD1A6NEE1 506 aa25.36■■□□□ 1.65
CLN3-252ENST00000636907 MIA2Q96PC5 1412 aa25.33■■□□□ 1.65
CLN3-252ENST00000636907 TCOF1Q13428 1488 aaKnown RBP25.33■■□□□ 1.64
CLN3-252ENST00000636907 CCER1Q8TC90 406 aaPredicted RBP25.32■■□□□ 1.64
CLN3-252ENST00000636907 KDM5BQ9UGL1 1544 aa25.27■■□□□ 1.64
CLN3-252ENST00000636907 ZCCHC11Q5TAX3 1644 aaKnown RBP25.27■■□□□ 1.64
CLN3-252ENST00000636907 ABCC10Q5T3U5 1492 aa25.26■■□□□ 1.63
CLN3-252ENST00000636907 ITSN2Q9NZM3 1697 aa25.25■■□□□ 1.63
CLN3-252ENST00000636907 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
CLN3-252ENST00000636907 GPATCH8Q9UKJ3 1502 aaKnown RBP25.25■■□□□ 1.63
CLN3-252ENST00000636907 PTPRKQ15262 1439 aa25.22■■□□□ 1.63
CLN3-252ENST00000636907 CDC42BPAQ5VT25 1732 aa25.19■■□□□ 1.62
CLN3-252ENST00000636907 SETD5Q9C0A6 1442 aa25.18■■□□□ 1.62
CLN3-252ENST00000636907 CFDP1Q9UEE9 299 aaPredicted RBP25.17■■□□□ 1.62
CLN3-252ENST00000636907 RAB3GAP2Q9H2M9 1393 aa25.16■■□□□ 1.62
CLN3-252ENST00000636907 ZNF644Q9H582 1327 aaPredicted RBP25.15■■□□□ 1.62
CLN3-252ENST00000636907 CAMSAP2Q08AD1 1489 aa25.13■■□□□ 1.61
CLN3-252ENST00000636907 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.11■■□□□ 1.61
CLN3-252ENST00000636907 TTC37Q6PGP7 1564 aa25.11■■□□□ 1.61
CLN3-252ENST00000636907 DNMT1P26358 1616 aaKnown RBP25.1■■□□□ 1.61
CLN3-252ENST00000636907 DHX57Q6P158 1386 aaKnown RBP25.09■■□□□ 1.61
CLN3-252ENST00000636907 PREX2Q70Z35 1606 aa25.08■■□□□ 1.61
CLN3-252ENST00000636907 DAPK1P53355 1430 aa25.08■■□□□ 1.61
CLN3-252ENST00000636907 HFM1A2PYH4 1435 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms