RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NISCHQ9Y2I1 1504 aa38.36■■■■□ 3.73
CLN3-252ENST00000636907 CCDC180Q9P1Z9 1646 aa33.45■■■□□ 2.95
CLN3-252ENST00000636907 ZCCHC6Q5VYS8 1495 aaKnown RBP32.22■■■□□ 2.75
CLN3-252ENST00000636907 DCAF1Q9Y4B6 1507 aa31.69■■■□□ 2.66
CLN3-252ENST00000636907 DCAF8L2P0C7V8 631 aa31.69■■■□□ 2.66
CLN3-252ENST00000636907 ABCC9O60706 1549 aa31.69■■■□□ 2.66
CLN3-252ENST00000636907 MYO15BQ96JP2 1530 aa31.32■■■□□ 2.61
CLN3-252ENST00000636907 SHROOM4Q9ULL8 1493 aa31.29■■■□□ 2.6
CLN3-252ENST00000636907 NACADO15069 1562 aa31.16■■■□□ 2.58
CLN3-252ENST00000636907 RB1CC1Q8TDY2 1594 aa30.9■■■□□ 2.54
CLN3-252ENST00000636907 SCRIBQ14160 1630 aa30.79■■■□□ 2.52
CLN3-252ENST00000636907 UNC13AQ9UPW8 1703 aa30.31■■■□□ 2.44
CLN3-252ENST00000636907 SUPT5HO00267 1087 aaKnown RBP30.07■■■□□ 2.41
CLN3-252ENST00000636907 BICRAQ9NZM4 1560 aa30■■■□□ 2.39
CLN3-252ENST00000636907 PABPN1Q86U42 306 aaKnown RBP eCLIP29.88■■■□□ 2.37
CLN3-252ENST00000636907 CECR2Q9BXF3 1484 aa29.83■■■□□ 2.37
CLN3-252ENST00000636907 RSF1Q96T23 1441 aaPredicted RBP29.75■■■□□ 2.35
CLN3-252ENST00000636907 MROH2BQ7Z745 1585 aa29.65■■■□□ 2.34
CLN3-252ENST00000636907 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
CLN3-252ENST00000636907 SMARCA4P51532 1647 aa29.5■■■□□ 2.31
CLN3-252ENST00000636907 WIZO95785 1651 aa29.41■■■□□ 2.3
CLN3-252ENST00000636907 PEG3Q9GZU2 1588 aa29.13■■■□□ 2.25
CLN3-252ENST00000636907 TOP2AP11388 1531 aaKnown RBP29.09■■■□□ 2.25
CLN3-252ENST00000636907 EIF4G1Q04637 1599 aaKnown RBP29.08■■■□□ 2.25
CLN3-252ENST00000636907 ATAD2BQ9ULI0 1458 aa29.02■■■□□ 2.24
CLN3-252ENST00000636907 SMARCA2P51531 1590 aa28.99■■■□□ 2.23
CLN3-252ENST00000636907 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
CLN3-252ENST00000636907 CCDC88BA6NC98 1476 aa28.8■■■□□ 2.2
CLN3-252ENST00000636907 CHIC1Q5VXU3 224 aa28.77■■■□□ 2.2
CLN3-252ENST00000636907 NCAPD3P42695 1498 aa28.76■■■□□ 2.19
CLN3-252ENST00000636907 HMGXB3Q12766 1538 aa28.72■■■□□ 2.19
CLN3-252ENST00000636907 CC2D2AQ9P2K1 1620 aa28.67■■■□□ 2.18
CLN3-252ENST00000636907 TRIM41Q8WV44 630 aa28.27■■■□□ 2.12
CLN3-252ENST00000636907 ABCC8Q09428 1581 aa28.2■■■□□ 2.1
CLN3-252ENST00000636907 CFTRP13569 1480 aa28.12■■■□□ 2.09
CLN3-252ENST00000636907 CADPSQ9ULU8 1353 aa28.02■■■□□ 2.08
CLN3-252ENST00000636907 WRNQ14191 1432 aaPredicted RBP eCLIP27.99■■■□□ 2.07
CLN3-252ENST00000636907 DNAJC5BQ9UF47 199 aa27.99■■■□□ 2.07
CLN3-252ENST00000636907 PRDM2Q13029 1718 aa27.97■■■□□ 2.07
CLN3-252ENST00000636907 SYNJ1O43426 1573 aa27.9■■■□□ 2.06
CLN3-252ENST00000636907 NESP48681 1621 aa27.82■■■□□ 2.04
CLN3-252ENST00000636907 LAMC3Q9Y6N6 1575 aa27.78■■■□□ 2.04
CLN3-252ENST00000636907 FAM9AQ8IZU1 332 aaPredicted RBP27.78■■■□□ 2.04
CLN3-252ENST00000636907 TOP2BQ02880 1626 aa27.77■■■□□ 2.04
CLN3-252ENST00000636907 BIVM-ERCC5R4GMW8 1640 aa27.75■■■□□ 2.03
CLN3-252ENST00000636907 CUX1P39880 1505 aa27.72■■■□□ 2.03
CLN3-252ENST00000636907 FANCD2Q9BXW9 1451 aa27.72■■■□□ 2.03
CLN3-252ENST00000636907 LOC105371045A0A1W2PR82 267 aa27.68■■■□□ 2.02
CLN3-252ENST00000636907 SOGA1O94964 1423 aa27.66■■■□□ 2.02
CLN3-252ENST00000636907 RUSC2Q8N2Y8 1516 aa27.57■■■□□ 2
CLN3-252ENST00000636907 PDS5BQ9NTI5 1447 aa27.56■■■□□ 2
CLN3-252ENST00000636907 EEA1Q15075 1411 aa27.55■■■□□ 2
CLN3-252ENST00000636907 CEP164Q9UPV0 1460 aa27.54■■■□□ 2
CLN3-252ENST00000636907 KIF21AQ7Z4S6 1674 aa27.48■■□□□ 1.99
CLN3-252ENST00000636907 DNMBPQ6XZF7 1577 aa27.47■■□□□ 1.99
CLN3-252ENST00000636907 TOPBP1Q92547 1522 aa27.43■■□□□ 1.98
CLN3-252ENST00000636907 FGD5Q6ZNL6 1462 aa27.42■■□□□ 1.98
CLN3-252ENST00000636907 CSRNP3Q8WYN3 585 aa27.42■■□□□ 1.98
CLN3-252ENST00000636907 EHMT2Q96KQ7 1210 aa27.4■■□□□ 1.98
CLN3-252ENST00000636907 URB2Q14146 1524 aaKnown RBP27.4■■□□□ 1.98
CLN3-252ENST00000636907 POLA1P09884 1462 aaPredicted RBP27.29■■□□□ 1.96
CLN3-252ENST00000636907 KIF27Q86VH2 1401 aa27.28■■□□□ 1.96
CLN3-252ENST00000636907 CUX2O14529 1486 aa27.23■■□□□ 1.95
CLN3-252ENST00000636907 MRC2Q9UBG0 1479 aa27.23■■□□□ 1.95
CLN3-252ENST00000636907 KIF21BO75037 1637 aa27.22■■□□□ 1.95
CLN3-252ENST00000636907 RAD54L2Q9Y4B4 1467 aa27.22■■□□□ 1.95
CLN3-252ENST00000636907 GOLGA3Q08378 1498 aa27.19■■□□□ 1.94
CLN3-252ENST00000636907 ABCA10Q8WWZ4 1543 aa27.17■■□□□ 1.94
CLN3-252ENST00000636907 ERCC6Q03468 1493 aa27.15■■□□□ 1.94
CLN3-252ENST00000636907 WDR97A6NE52 1622 aa27.1■■□□□ 1.93
CLN3-252ENST00000636907 PRXQ9BXM0 1461 aa27.1■■□□□ 1.93
CLN3-252ENST00000636907 WDR62O43379 1518 aa27.1■■□□□ 1.93
CLN3-252ENST00000636907 TNIKQ9UKE5 1360 aa27.1■■□□□ 1.93
CLN3-252ENST00000636907 RAPGEF2Q9Y4G8 1499 aa27.09■■□□□ 1.93
CLN3-252ENST00000636907 UBTFP17480 764 aaKnown RBP27.07■■□□□ 1.92
CLN3-252ENST00000636907 IGF1RP08069 1367 aa27.05■■□□□ 1.92
CLN3-252ENST00000636907 ERICH3Q5RHP9 1530 aa27.04■■□□□ 1.92
CLN3-252ENST00000636907 THOC2Q8NI27 1593 aaKnown RBP27.03■■□□□ 1.92
CLN3-252ENST00000636907 TARBP1Q13395 1621 aaKnown RBP27.02■■□□□ 1.92
CLN3-252ENST00000636907 ABCA5Q8WWZ7 1642 aa26.97■■□□□ 1.91
CLN3-252ENST00000636907 CEP162Q5TB80 1403 aa26.96■■□□□ 1.91
CLN3-252ENST00000636907 TDRD9Q8NDG6 1382 aaKnown RBP26.94■■□□□ 1.9
CLN3-252ENST00000636907 CARMIL1Q5VZK9 1371 aa26.91■■□□□ 1.9
CLN3-252ENST00000636907 GAPVD1Q14C86 1478 aa26.9■■□□□ 1.9
CLN3-252ENST00000636907 IFT140Q96RY7 1462 aa26.89■■□□□ 1.89
CLN3-252ENST00000636907 CUL7Q14999 1698 aa26.84■■□□□ 1.89
CLN3-252ENST00000636907 AQRO60306 1485 aaKnown RBP eCLIP26.79■■□□□ 1.88
CLN3-252ENST00000636907 ZNF608Q9ULD9 1512 aaPredicted RBP26.77■■□□□ 1.88
CLN3-252ENST00000636907 PBRM1Q86U86 1689 aa26.76■■□□□ 1.87
CLN3-252ENST00000636907 CLIP1P30622 1438 aa26.76■■□□□ 1.87
CLN3-252ENST00000636907 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
CLN3-252ENST00000636907 EIF4G3O43432 1585 aaKnown RBP26.68■■□□□ 1.86
CLN3-252ENST00000636907 RANGAP1P46060 587 aaPredicted RBP26.66■■□□□ 1.86
CLN3-252ENST00000636907 ADAMTS12P58397 1594 aa26.61■■□□□ 1.85
CLN3-252ENST00000636907 FHAD1B1AJZ9 1412 aa26.6■■□□□ 1.85
CLN3-252ENST00000636907 CTTNBP2Q8WZ74 1663 aa26.55■■□□□ 1.84
CLN3-252ENST00000636907 SNAPC4Q5SXM2 1469 aa26.53■■□□□ 1.84
CLN3-252ENST00000636907 ARAP1Q96P48 1450 aa26.52■■□□□ 1.84
CLN3-252ENST00000636907 ARHGAP35Q9NRY4 1499 aa26.52■■□□□ 1.84
CLN3-252ENST00000636907 VPS8Q8N3P4 1428 aa26.51■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms