RNA–Protein interactions for RNA: ENST00000627460.1

CHD2-211, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 760 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-211ENST00000627460 RAD54L2Q9Y4B4 1467 aa13.7□□□□□ -0.22
CHD2-211ENST00000627460 IGF1RP08069 1367 aa13.7□□□□□ -0.22
CHD2-211ENST00000627460 TARBP1Q13395 1621 aaKnown RBP13.68□□□□□ -0.22
CHD2-211ENST00000627460 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
CHD2-211ENST00000627460 RAPGEF2Q9Y4G8 1499 aa13.68□□□□□ -0.22
CHD2-211ENST00000627460 THOC2Q8NI27 1593 aaKnown RBP13.68□□□□□ -0.22
CHD2-211ENST00000627460 CARMIL1Q5VZK9 1371 aa13.67□□□□□ -0.22
CHD2-211ENST00000627460 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
CHD2-211ENST00000627460 CEP162Q5TB80 1403 aa13.66□□□□□ -0.22
CHD2-211ENST00000627460 GRIN2BQ13224 1484 aa13.6□□□□□ -0.23
CHD2-211ENST00000627460 CLIP1P30622 1438 aa13.59□□□□□ -0.23
CHD2-211ENST00000627460 TDRD9Q8NDG6 1382 aaKnown RBP13.58□□□□□ -0.23
CHD2-211ENST00000627460 PBRM1Q86U86 1689 aa13.57□□□□□ -0.24
CHD2-211ENST00000627460 FHAD1B1AJZ9 1412 aa13.56□□□□□ -0.24
CHD2-211ENST00000627460 MAGI1Q96QZ7 1491 aaPredicted RBP13.52□□□□□ -0.25
CHD2-211ENST00000627460 EIF4G3O43432 1585 aaKnown RBP13.51□□□□□ -0.25
CHD2-211ENST00000627460 CTTNBP2Q8WZ74 1663 aa13.5□□□□□ -0.25
CHD2-211ENST00000627460 ADAMTS12P58397 1594 aa13.5□□□□□ -0.25
CHD2-211ENST00000627460 AQRO60306 1485 aaKnown RBP eCLIP13.5□□□□□ -0.254e-10■■■■■ 51.6
CHD2-211ENST00000627460 MYCNP04198 464 aaPredicted RBP13.5□□□□□ -0.25
CHD2-211ENST00000627460 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
CHD2-211ENST00000627460 EFCAB5A4FU69 1503 aa13.49□□□□□ -0.25
CHD2-211ENST00000627460 ZNF608Q9ULD9 1512 aaPredicted RBP13.47□□□□□ -0.25
CHD2-211ENST00000627460 ATXN8OSP0DMR3 200 aa13.45□□□□□ -0.26
CHD2-211ENST00000627460 APLP2Q06481 763 aa13.45□□□□□ -0.26
CHD2-211ENST00000627460 SNAPC4Q5SXM2 1469 aa13.43□□□□□ -0.26
CHD2-211ENST00000627460 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
CHD2-211ENST00000627460 TRIM26Q12899 539 aaPredicted RBP13.42□□□□□ -0.26
CHD2-211ENST00000627460 ARHGAP35Q9NRY4 1499 aa13.41□□□□□ -0.26
CHD2-211ENST00000627460 GRIN2AQ12879 1464 aa13.4□□□□□ -0.26
CHD2-211ENST00000627460 ARAP1Q96P48 1450 aa13.39□□□□□ -0.27
CHD2-211ENST00000627460 IQGAP2Q13576 1575 aa13.38□□□□□ -0.27
CHD2-211ENST00000627460 CHMP7Q8WUX9 453 aaPredicted RBP13.38□□□□□ -0.27
CHD2-211ENST00000627460 KIAA0586Q9BVV6 1533 aa13.38□□□□□ -0.27
CHD2-211ENST00000627460 FMN1Q68DA7 1419 aa13.37□□□□□ -0.27
CHD2-211ENST00000627460 RANGAP1P46060 587 aaPredicted RBP13.35□□□□□ -0.27
CHD2-211ENST00000627460 MAP3K1Q13233 1512 aa13.34□□□□□ -0.27
CHD2-211ENST00000627460 SAMD9Q5K651 1589 aa13.34□□□□□ -0.27
CHD2-211ENST00000627460 DCAF8L1A6NGE4 600 aa13.33□□□□□ -0.28
CHD2-211ENST00000627460 UGGT2Q9NYU1 1516 aa13.33□□□□□ -0.28
CHD2-211ENST00000627460 NUP160Q12769 1436 aa13.3□□□□□ -0.28
CHD2-211ENST00000627460 FYCO1Q9BQS8 1478 aa13.3□□□□□ -0.28
CHD2-211ENST00000627460 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.27□□□□□ -0.291e-6■■■□□ 16.7
CHD2-211ENST00000627460 PCGF6Q9BYE7 350 aa13.27□□□□□ -0.29
CHD2-211ENST00000627460 CARMIL2Q6F5E8 1435 aa13.27□□□□□ -0.29
CHD2-211ENST00000627460 CASKIN1Q8WXD9 1431 aa13.27□□□□□ -0.29
CHD2-211ENST00000627460 FBLN2P98095 1184 aa13.26□□□□□ -0.29
CHD2-211ENST00000627460 FHOD3Q2V2M9 1422 aa13.25□□□□□ -0.29
CHD2-211ENST00000627460 CEP170Q5SW79 1584 aa13.24□□□□□ -0.29
CHD2-211ENST00000627460 KIAA0556O60303 1618 aa13.22□□□□□ -0.29
CHD2-211ENST00000627460 PCF11O94913 1555 aaKnown RBP13.22□□□□□ -0.29
CHD2-211ENST00000627460 TIAM1Q13009 1591 aa13.22□□□□□ -0.29
CHD2-211ENST00000627460 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
CHD2-211ENST00000627460 CFAP43Q8NDM7 1665 aa13.21□□□□□ -0.3
CHD2-211ENST00000627460 P3H3Q8IVL6 736 aa13.2□□□□□ -0.3
CHD2-211ENST00000627460 HECW1Q76N89 1606 aa13.2□□□□□ -0.3
CHD2-211ENST00000627460 CHD1O14646 1710 aa13.19□□□□□ -0.3
CHD2-211ENST00000627460 JPH4Q96JJ6 628 aa13.18□□□□□ -0.3
CHD2-211ENST00000627460 DISP1Q96F81 1524 aa13.18□□□□□ -0.3
CHD2-211ENST00000627460 U3KPZ7 1027 aaPredicted RBP13.16□□□□□ -0.3
CHD2-211ENST00000627460 LRRC9Q6ZRR7 1453 aa13.16□□□□□ -0.3
CHD2-211ENST00000627460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
CHD2-211ENST00000627460 HNRNPUL2Q1KMD3 747 aaKnown RBP13.15□□□□□ -0.3
CHD2-211ENST00000627460 PPARGC1BQ86YN6 1023 aaKnown RBP13.13□□□□□ -0.31
CHD2-211ENST00000627460 ATP1B4Q9UN42 357 aaPredicted RBP13.13□□□□□ -0.31
CHD2-211ENST00000627460 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
CHD2-211ENST00000627460 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
CHD2-211ENST00000627460 SHROOM2Q13796 1616 aa13.12□□□□□ -0.31
CHD2-211ENST00000627460 MTUS2Q5JR59 1369 aa13.11□□□□□ -0.31
CHD2-211ENST00000627460 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
CHD2-211ENST00000627460 EHBP1L1Q8N3D4 1523 aa13.11□□□□□ -0.31
CHD2-211ENST00000627460 RAPGEF6Q8TEU7 1601 aa13.1□□□□□ -0.31
CHD2-211ENST00000627460 PRG4Q92954 1404 aaPredicted RBP13.09□□□□□ -0.31
CHD2-211ENST00000627460 EPRSP07814 1512 aaKnown RBP13.08□□□□□ -0.31
CHD2-211ENST00000627460 CLASP1Q7Z460 1538 aa13.08□□□□□ -0.31
CHD2-211ENST00000627460 KANK4Q5T7N3 995 aaPredicted RBP13.08□□□□□ -0.32
CHD2-211ENST00000627460 RRBP1Q9P2E9 1410 aaKnown RBP13.07□□□□□ -0.32
CHD2-211ENST00000627460 TTBK1Q5TCY1 1321 aaPredicted RBP13.07□□□□□ -0.32
CHD2-211ENST00000627460 SUPT6HQ7KZ85 1726 aaKnown RBP13.06□□□□□ -0.32
CHD2-211ENST00000627460 PTPRGP23470 1445 aa13.05□□□□□ -0.32
CHD2-211ENST00000627460 CCNB3Q8WWL7 1395 aa13.04□□□□□ -0.32
CHD2-211ENST00000627460 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.04□□□□□ -0.32
CHD2-211ENST00000627460 ABCA8O94911 1581 aa13.03□□□□□ -0.32
CHD2-211ENST00000627460 NUP153P49790 1475 aaKnown RBP13.02□□□□□ -0.33
CHD2-211ENST00000627460 ZEB1P37275 1124 aaPredicted RBP13.01□□□□□ -0.33
CHD2-211ENST00000627460 LRRIQ1Q96JM4 1722 aa13.01□□□□□ -0.33
CHD2-211ENST00000627460 OSCARQ8IYS5 282 aa13□□□□□ -0.33
CHD2-211ENST00000627460 PLB1Q6P1J6 1458 aa12.98□□□□□ -0.33
CHD2-211ENST00000627460 UACAQ9BZF9 1416 aa12.98□□□□□ -0.33
CHD2-211ENST00000627460 NCOA2Q15596 1464 aa12.97□□□□□ -0.33
CHD2-211ENST00000627460 MYOM3Q5VTT5 1437 aa12.97□□□□□ -0.33
CHD2-211ENST00000627460 FKBP8Q14318 412 aa12.97□□□□□ -0.33
CHD2-211ENST00000627460 ARHGEF11O15085 1522 aa12.97□□□□□ -0.33
CHD2-211ENST00000627460 TROQ12816 1431 aaPredicted RBP12.96□□□□□ -0.33
CHD2-211ENST00000627460 MIA2Q96PC5 1412 aa12.96□□□□□ -0.33
CHD2-211ENST00000627460 CDK13Q14004 1512 aaKnown RBP12.96□□□□□ -0.33
CHD2-211ENST00000627460 FGD6Q6ZV73 1430 aa12.96□□□□□ -0.34
CHD2-211ENST00000627460 PHLDB1Q86UU1 1377 aa12.95□□□□□ -0.34
CHD2-211ENST00000627460 PLEKHD1A6NEE1 506 aa12.95□□□□□ -0.34
CHD2-211ENST00000627460 UHRF1BP1LA0JNW5 1464 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms