RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 CTTNBP2Q8WZ74 1663 aa32.19■■■□□ 2.74
LIME1-210ENST00000621325 FHOD3Q2V2M9 1422 aa32.16■■■□□ 2.74
LIME1-210ENST00000621325 AQRO60306 1485 aaKnown RBP eCLIP32.15■■■□□ 2.746e-6■■■■□ 25.1
LIME1-210ENST00000621325 FHAD1B1AJZ9 1412 aa32.1■■■□□ 2.73
LIME1-210ENST00000621325 EFCAB5A4FU69 1503 aa32.09■■■□□ 2.73
LIME1-210ENST00000621325 TIAM1Q13009 1591 aa32.09■■■□□ 2.73
LIME1-210ENST00000621325 WDR62O43379 1518 aa32.07■■■□□ 2.72
LIME1-210ENST00000621325 PCF11O94913 1555 aaKnown RBP32.07■■■□□ 2.72
LIME1-210ENST00000621325 PBRM1Q86U86 1689 aa32.05■■■□□ 2.72
LIME1-210ENST00000621325 MAP3K1Q13233 1512 aa32.04■■■□□ 2.72
LIME1-210ENST00000621325 RRBP1Q9P2E9 1410 aaKnown RBP32.03■■■□□ 2.72
LIME1-210ENST00000621325 ATP1B4Q9UN42 357 aaPredicted RBP32.02■■■□□ 2.72
LIME1-210ENST00000621325 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
LIME1-210ENST00000621325 ERCC6Q03468 1493 aa32■■■□□ 2.71
LIME1-210ENST00000621325 IFT140Q96RY7 1462 aa31.99■■■□□ 2.71
LIME1-210ENST00000621325 LRRC9Q6ZRR7 1453 aa31.98■■■□□ 2.71
LIME1-210ENST00000621325 GRIN2BQ13224 1484 aa31.95■■■□□ 2.7
LIME1-210ENST00000621325 ADAMTS12P58397 1594 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 CCNB3Q8WWL7 1395 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 CASKIN1Q8WXD9 1431 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 FYCO1Q9BQS8 1478 aa31.92■■■□□ 2.7
LIME1-210ENST00000621325 SAMD9Q5K651 1589 aa31.92■■■□□ 2.7
LIME1-210ENST00000621325 CFAP43Q8NDM7 1665 aa31.91■■■□□ 2.7
LIME1-210ENST00000621325 FMN1Q68DA7 1419 aa31.88■■■□□ 2.69
LIME1-210ENST00000621325 THOC2Q8NI27 1593 aaKnown RBP31.85■■■□□ 2.69
LIME1-210ENST00000621325 SNAPC4Q5SXM2 1469 aa31.85■■■□□ 2.69
LIME1-210ENST00000621325 PHLDB1Q86UU1 1377 aa31.84■■■□□ 2.69
LIME1-210ENST00000621325 ITGAEP38570 1179 aa31.79■■■□□ 2.68
LIME1-210ENST00000621325 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
LIME1-210ENST00000621325 MYT1Q01538 1121 aa31.77■■■□□ 2.68
LIME1-210ENST00000621325 IQGAP2Q13576 1575 aa31.75■■■□□ 2.67
LIME1-210ENST00000621325 LRRIQ1Q96JM4 1722 aa31.67■■■□□ 2.66
LIME1-210ENST00000621325 DHX57Q6P158 1386 aaKnown RBP31.66■■■□□ 2.66
LIME1-210ENST00000621325 FAM50AQ14320 339 aaKnown RBP31.64■■■□□ 2.65
LIME1-210ENST00000621325 GRIN2AQ12879 1464 aa31.61■■■□□ 2.65
LIME1-210ENST00000621325 MTUS2Q5JR59 1369 aa31.6■■■□□ 2.65
LIME1-210ENST00000621325 UGGT2Q9NYU1 1516 aa31.57■■■□□ 2.64
LIME1-210ENST00000621325 KIAA0586Q9BVV6 1533 aa31.57■■■□□ 2.64
LIME1-210ENST00000621325 MAGI1Q96QZ7 1491 aaPredicted RBP31.54■■■□□ 2.64
LIME1-210ENST00000621325 CHMP7Q8WUX9 453 aaPredicted RBP31.5■■■□□ 2.63
LIME1-210ENST00000621325 RAB3GAP2Q9H2M9 1393 aa31.49■■■□□ 2.63
LIME1-210ENST00000621325 FBLN2P98095 1184 aa31.48■■■□□ 2.63
LIME1-210ENST00000621325 SYNJ2O15056 1496 aa31.47■■■□□ 2.63
LIME1-210ENST00000621325 DISP1Q96F81 1524 aa31.47■■■□□ 2.63
LIME1-210ENST00000621325 SCAF1Q9H7N4 1312 aaKnown RBP31.47■■■□□ 2.63
LIME1-210ENST00000621325 CLSPNQ9HAW4 1339 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 FGD6Q6ZV73 1430 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 MAGI3Q5TCQ9 1506 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 NCOA2Q15596 1464 aa31.45■■■□□ 2.63
LIME1-210ENST00000621325 HECW1Q76N89 1606 aa31.44■■■□□ 2.62
LIME1-210ENST00000621325 CCDC18Q5T9S5 1454 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 KIAA0556O60303 1618 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 ARID3CA6NKF2 412 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 CEP170Q5SW79 1584 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 SETD5Q9C0A6 1442 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 EHBP1L1Q8N3D4 1523 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 EPRSP07814 1512 aaKnown RBP31.41■■■□□ 2.62
LIME1-210ENST00000621325 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.4■■■□□ 2.62
LIME1-210ENST00000621325 CDK13Q14004 1512 aaKnown RBP31.39■■■□□ 2.61
LIME1-210ENST00000621325 SUPT6HQ7KZ85 1726 aaKnown RBP31.37■■■□□ 2.61
LIME1-210ENST00000621325 ZNF316A6NFI3 1004 aaPredicted RBP31.35■■■□□ 2.61
LIME1-210ENST00000621325 MYOM3Q5VTT5 1437 aa31.35■■■□□ 2.61
LIME1-210ENST00000621325 DIEXFQ68CQ4 756 aaKnown RBP31.32■■■□□ 2.6
LIME1-210ENST00000621325 ARHGEF11O15085 1522 aa31.31■■■□□ 2.6
LIME1-210ENST00000621325 NUP160Q12769 1436 aa31.3■■■□□ 2.6
LIME1-210ENST00000621325 PTPRKQ15262 1439 aa31.26■■■□□ 2.6
LIME1-210ENST00000621325 MAPKBP1O60336 1514 aa31.24■■■□□ 2.59
LIME1-210ENST00000621325 NUP153P49790 1475 aaKnown RBP31.24■■■□□ 2.59
LIME1-210ENST00000621325 JPH4Q96JJ6 628 aa31.23■■■□□ 2.59
LIME1-210ENST00000621325 RAPGEF6Q8TEU7 1601 aa31.2■■■□□ 2.59
LIME1-210ENST00000621325 PTPN23Q9H3S7 1636 aa31.19■■■□□ 2.58
LIME1-210ENST00000621325 PLB1Q6P1J6 1458 aa31.15■■■□□ 2.58
LIME1-210ENST00000621325 CARMIL2Q6F5E8 1435 aa31.12■■■□□ 2.57
LIME1-210ENST00000621325 TCOF1Q13428 1488 aaKnown RBP31.1■■■□□ 2.57
LIME1-210ENST00000621325 HFM1A2PYH4 1435 aa31.1■■■□□ 2.57
LIME1-210ENST00000621325 NAIPQ13075 1403 aa31.04■■■□□ 2.56
LIME1-210ENST00000621325 MIA2Q96PC5 1412 aa31.03■■■□□ 2.56
LIME1-210ENST00000621325 SIN3AQ96ST3 1273 aa31.03■■■□□ 2.56
LIME1-210ENST00000621325 CHIC2Q9UKJ5 165 aa31.02■■■□□ 2.56
LIME1-210ENST00000621325 CDK11AQ9UQ88 783 aaPredicted RBP31.02■■■□□ 2.56
LIME1-210ENST00000621325 PRG4Q92954 1404 aaPredicted RBP31.01■■■□□ 2.55
LIME1-210ENST00000621325 RRP7BPQ9NSQ0 103 aa30.97■■■□□ 2.55
LIME1-210ENST00000621325 NEUROD1Q13562 356 aa30.97■■■□□ 2.55
LIME1-210ENST00000621325 CHD1O14646 1710 aa30.95■■■□□ 2.55
LIME1-210ENST00000621325 TROQ12816 1431 aaPredicted RBP30.94■■■□□ 2.54
LIME1-210ENST00000621325 ZNF644Q9H582 1327 aaPredicted RBP30.92■■■□□ 2.54
LIME1-210ENST00000621325 UACAQ9BZF9 1416 aa30.91■■■□□ 2.54
LIME1-210ENST00000621325 ABCA8O94911 1581 aa30.9■■■□□ 2.54
LIME1-210ENST00000621325 KIF14Q15058 1648 aa30.85■■■□□ 2.53
LIME1-210ENST00000621325 ATP10BO94823 1461 aa30.83■■■□□ 2.53
LIME1-210ENST00000621325 PTPRGP23470 1445 aa30.82■■■□□ 2.52
LIME1-210ENST00000621325 DAPK1P53355 1430 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 GCC2Q8IWJ2 1684 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 AKNAQ7Z591 1439 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 KDM6BO15054 1643 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 ABCC5O15440 1437 aa30.8■■■□□ 2.52
LIME1-210ENST00000621325 MIER1Q8N108 512 aa30.78■■■□□ 2.52
LIME1-210ENST00000621325 GPATCH8Q9UKJ3 1502 aaKnown RBP30.78■■■□□ 2.52
LIME1-210ENST00000621325 ADCY10Q96PN6 1610 aa30.78■■■□□ 2.52
LIME1-210ENST00000621325 CFDP1Q9UEE9 299 aaPredicted RBP30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 211.9 ms