RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 PRXQ9BXM0 1461 aa8.77□□□□□ -1
SHMT1-211ENST00000618902 CSRNP3Q8WYN3 585 aa8.76□□□□□ -1.01
SHMT1-211ENST00000618902 KIAA0586Q9BVV6 1533 aa8.75□□□□□ -1.01
SHMT1-211ENST00000618902 CYB5RLQ6IPT4 315 aa8.75□□□□□ -1.01
SHMT1-211ENST00000618902 JPH4Q96JJ6 628 aa8.75□□□□□ -1.01
SHMT1-211ENST00000618902 SHROOM2Q13796 1616 aa8.75□□□□□ -1.01
SHMT1-211ENST00000618902 ARAP1Q96P48 1450 aa8.74□□□□□ -1.01
SHMT1-211ENST00000618902 RAPGEF2Q9Y4G8 1499 aa8.74□□□□□ -1.01
SHMT1-211ENST00000618902 EEA1Q15075 1411 aa8.73□□□□□ -1.01
SHMT1-211ENST00000618902 ERCC6L2Q5T890 1561 aa8.72□□□□□ -1.01
SHMT1-211ENST00000618902 CARMIL2Q6F5E8 1435 aa8.7□□□□□ -1.02
SHMT1-211ENST00000618902 PRG4Q92954 1404 aaPredicted RBP8.69□□□□□ -1.02
SHMT1-211ENST00000618902 EHMT2Q96KQ7 1210 aa8.67□□□□□ -1.02
SHMT1-211ENST00000618902 KIF21BO75037 1637 aa8.66□□□□□ -1.02
SHMT1-211ENST00000618902 NPM1P06748 294 aaKnown RBP eCLIP8.65□□□□□ -1.02
SHMT1-211ENST00000618902 IQGAP2Q13576 1575 aa8.65□□□□□ -1.03
SHMT1-211ENST00000618902 TNIKQ9UKE5 1360 aa8.64□□□□□ -1.03
SHMT1-211ENST00000618902 DISP1Q96F81 1524 aa8.64□□□□□ -1.03
SHMT1-211ENST00000618902 GOLGA3Q08378 1498 aa8.64□□□□□ -1.03
SHMT1-211ENST00000618902 UGGT2Q9NYU1 1516 aa8.63□□□□□ -1.03
SHMT1-211ENST00000618902 CTTNBP2Q8WZ74 1663 aa8.62□□□□□ -1.03
SHMT1-211ENST00000618902 PTPRGP23470 1445 aa8.62□□□□□ -1.03
SHMT1-211ENST00000618902 UHRF1BP1LA0JNW5 1464 aa8.6□□□□□ -1.03
SHMT1-211ENST00000618902 MAPKBP1O60336 1514 aa8.59□□□□□ -1.03
SHMT1-211ENST00000618902 LOC105371045A0A1W2PR82 267 aa8.59□□□□□ -1.03
SHMT1-211ENST00000618902 UBTFP17480 764 aaKnown RBP8.59□□□□□ -1.03
SHMT1-211ENST00000618902 TRHP20396 242 aaPredicted RBP8.59□□□□□ -1.03
SHMT1-211ENST00000618902 KIAA0556O60303 1618 aa8.58□□□□□ -1.04
SHMT1-211ENST00000618902 RANGAP1P46060 587 aaPredicted RBP8.57□□□□□ -1.04
SHMT1-211ENST00000618902 P3H3Q8IVL6 736 aa8.57□□□□□ -1.04
SHMT1-211ENST00000618902 TTBK1Q5TCY1 1321 aaPredicted RBP8.56□□□□□ -1.04
SHMT1-211ENST00000618902 UACAQ9BZF9 1416 aa8.56□□□□□ -1.04
SHMT1-211ENST00000618902 SAMD9Q5K651 1589 aa8.56□□□□□ -1.04
SHMT1-211ENST00000618902 ABCC2Q92887 1545 aa8.55□□□□□ -1.04
SHMT1-211ENST00000618902 PLB1Q6P1J6 1458 aa8.55□□□□□ -1.04
SHMT1-211ENST00000618902 FHOD3Q2V2M9 1422 aa8.54□□□□□ -1.04
SHMT1-211ENST00000618902 ABCC10Q5T3U5 1492 aa8.54□□□□□ -1.04
SHMT1-211ENST00000618902 ARHGAP35Q9NRY4 1499 aa8.54□□□□□ -1.04
SHMT1-211ENST00000618902 ADCY10Q96PN6 1610 aa8.53□□□□□ -1.04
SHMT1-211ENST00000618902 KDM5BQ9UGL1 1544 aa8.53□□□□□ -1.04
SHMT1-211ENST00000618902 EFCAB5A4FU69 1503 aa8.5□□□□□ -1.05
SHMT1-211ENST00000618902 ABCA8O94911 1581 aa8.5□□□□□ -1.05
SHMT1-211ENST00000618902 GLI2P10070 1586 aa8.48□□□□□ -1.05
SHMT1-211ENST00000618902 CLIP1P30622 1438 aa8.48□□□□□ -1.05
SHMT1-211ENST00000618902 FAM69CQ0P6D2 419 aa8.48□□□□□ -1.05
SHMT1-211ENST00000618902 CEP162Q5TB80 1403 aa8.47□□□□□ -1.05
SHMT1-211ENST00000618902 ASXL2Q76L83 1435 aa8.46□□□□□ -1.05
SHMT1-211ENST00000618902 ARID3CA6NKF2 412 aa8.46□□□□□ -1.06
SHMT1-211ENST00000618902 DIP2BQ9P265 1576 aa8.46□□□□□ -1.06
SHMT1-211ENST00000618902 PHLDB1Q86UU1 1377 aa8.46□□□□□ -1.06
SHMT1-211ENST00000618902 NUP153P49790 1475 aaKnown RBP8.45□□□□□ -1.06
SHMT1-211ENST00000618902 KIF13AQ9H1H9 1805 aa8.45□□□□□ -1.06
SHMT1-211ENST00000618902 FMN1Q68DA7 1419 aa8.45□□□□□ -1.06
SHMT1-211ENST00000618902 ATP10BO94823 1461 aa8.45□□□□□ -1.06
SHMT1-211ENST00000618902 TEX14Q8IWB6 1497 aa8.45□□□□□ -1.06
SHMT1-211ENST00000618902 WDR7Q9Y4E6 1490 aa8.45□□□□□ -1.06
SHMT1-211ENST00000618902 RAPGEF6Q8TEU7 1601 aa8.43□□□□□ -1.06
SHMT1-211ENST00000618902 EPRSP07814 1512 aaKnown RBP8.43□□□□□ -1.06
SHMT1-211ENST00000618902 ZCCHC11Q5TAX3 1644 aaKnown RBP8.43□□□□□ -1.06
SHMT1-211ENST00000618902 CDK11AQ9UQ88 783 aaPredicted RBP8.42□□□□□ -1.06
SHMT1-211ENST00000618902 PCF11O94913 1555 aaKnown RBP8.4□□□□□ -1.06
SHMT1-211ENST00000618902 CDK13Q14004 1512 aaKnown RBP8.4□□□□□ -1.06
SHMT1-211ENST00000618902 MAGI3Q5TCQ9 1506 aa8.4□□□□□ -1.06
SHMT1-211ENST00000618902 CASKIN1Q8WXD9 1431 aa8.4□□□□□ -1.06
SHMT1-211ENST00000618902 PLEKHD1A6NEE1 506 aa8.39□□□□□ -1.07
SHMT1-211ENST00000618902 LRRIQ1Q96JM4 1722 aa8.39□□□□□ -1.07
SHMT1-211ENST00000618902 CFAP43Q8NDM7 1665 aa8.38□□□□□ -1.07
SHMT1-211ENST00000618902 ATP1B4Q9UN42 357 aaPredicted RBP8.38□□□□□ -1.07
SHMT1-211ENST00000618902 CD109Q6YHK3 1445 aa8.37□□□□□ -1.07
SHMT1-211ENST00000618902 MAP3K4Q9Y6R4 1608 aa8.37□□□□□ -1.07
SHMT1-211ENST00000618902 FYCO1Q9BQS8 1478 aa8.36□□□□□ -1.07
SHMT1-211ENST00000618902 VPS8Q8N3P4 1428 aa8.36□□□□□ -1.07
SHMT1-211ENST00000618902 HECW1Q76N89 1606 aa8.36□□□□□ -1.07
SHMT1-211ENST00000618902 KCNH8Q96L42 1107 aa8.35□□□□□ -1.07
SHMT1-211ENST00000618902 NEO1Q92859 1461 aa8.34□□□□□ -1.07
SHMT1-211ENST00000618902 KDM6BO15054 1643 aa8.34□□□□□ -1.07
SHMT1-211ENST00000618902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.34□□□□□ -1.07
SHMT1-211ENST00000618902 HNRNPUL2Q1KMD3 747 aaKnown RBP8.34□□□□□ -1.07
SHMT1-211ENST00000618902 ARAP3Q8WWN8 1544 aa8.34□□□□□ -1.08
SHMT1-211ENST00000618902 CCDC18Q5T9S5 1454 aa8.33□□□□□ -1.08
SHMT1-211ENST00000618902 ABCA9Q8IUA7 1624 aa8.33□□□□□ -1.08
SHMT1-211ENST00000618902 PPRC1Q5VV67 1664 aaKnown RBP8.32□□□□□ -1.08
SHMT1-211ENST00000618902 TROQ12816 1431 aaPredicted RBP8.31□□□□□ -1.08
SHMT1-211ENST00000618902 KIF14Q15058 1648 aa8.31□□□□□ -1.08
SHMT1-211ENST00000618902 TSPOAP1O95153 1857 aa8.3□□□□□ -1.08
SHMT1-211ENST00000618902 KANK4Q5T7N3 995 aaPredicted RBP8.3□□□□□ -1.08
SHMT1-211ENST00000618902 CFAP74Q9C0B2 1584 aa8.3□□□□□ -1.08
SHMT1-211ENST00000618902 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.29□□□□□ -1.08
SHMT1-211ENST00000618902 TTC37Q6PGP7 1564 aa8.29□□□□□ -1.08
SHMT1-211ENST00000618902 COL17A1Q9UMD9 1497 aaPredicted RBP8.28□□□□□ -1.08
SHMT1-211ENST00000618902 TIAM1Q13009 1591 aa8.27□□□□□ -1.09
SHMT1-211ENST00000618902 MAGI2Q86UL8 1455 aa8.27□□□□□ -1.09
SHMT1-211ENST00000618902 EFCAB2Q5VUJ9 269 aa8.27□□□□□ -1.09
SHMT1-211ENST00000618902 PLCH2O75038 1416 aa8.27□□□□□ -1.09
SHMT1-211ENST00000618902 LRRC9Q6ZRR7 1453 aa8.26□□□□□ -1.09
SHMT1-211ENST00000618902 MTUS2Q5JR59 1369 aa8.25□□□□□ -1.09
SHMT1-211ENST00000618902 MAP3K1Q13233 1512 aa8.25□□□□□ -1.09
SHMT1-211ENST00000618902 FANCAO15360 1455 aa8.25□□□□□ -1.09
SHMT1-211ENST00000618902 EHBP1L1Q8N3D4 1523 aa8.24□□□□□ -1.09
SHMT1-211ENST00000618902 AKNAQ7Z591 1439 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms