RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 NISCHQ9Y2I1 1504 aa12.63□□□□□ -0.39
SHMT1-211ENST00000618902 CCDC180Q9P1Z9 1646 aa11.24□□□□□ -0.61
SHMT1-211ENST00000618902 ABCC9O60706 1549 aa10.89□□□□□ -0.67
SHMT1-211ENST00000618902 MYO15BQ96JP2 1530 aa10.63□□□□□ -0.71
SHMT1-211ENST00000618902 NACADO15069 1562 aa10.62□□□□□ -0.71
SHMT1-211ENST00000618902 RB1CC1Q8TDY2 1594 aa10.6□□□□□ -0.71
SHMT1-211ENST00000618902 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
SHMT1-211ENST00000618902 DCAF1Q9Y4B6 1507 aa10.53□□□□□ -0.72
SHMT1-211ENST00000618902 DCAF8L2P0C7V8 631 aa10.5□□□□□ -0.73
SHMT1-211ENST00000618902 SHROOM4Q9ULL8 1493 aa10.34□□□□□ -0.75
SHMT1-211ENST00000618902 UNC13AQ9UPW8 1703 aa10.24□□□□□ -0.77
SHMT1-211ENST00000618902 PABPN1Q86U42 306 aaKnown RBP eCLIP10.22□□□□□ -0.77
SHMT1-211ENST00000618902 SCRIBQ14160 1630 aa10.21□□□□□ -0.78
SHMT1-211ENST00000618902 BICRAQ9NZM4 1560 aa10.2□□□□□ -0.78
SHMT1-211ENST00000618902 DNAJC5BQ9UF47 199 aa10.02□□□□□ -0.81
SHMT1-211ENST00000618902 EIF4G1Q04637 1599 aaKnown RBP9.96□□□□□ -0.82
SHMT1-211ENST00000618902 CHIC1Q5VXU3 224 aa9.92□□□□□ -0.82
SHMT1-211ENST00000618902 CC2D2AQ9P2K1 1620 aa9.89□□□□□ -0.83
SHMT1-211ENST00000618902 CECR2Q9BXF3 1484 aa9.88□□□□□ -0.83
SHMT1-211ENST00000618902 NCAPD3P42695 1498 aa9.8□□□□□ -0.84
SHMT1-211ENST00000618902 BAZ1AQ9NRL2 1556 aaPredicted RBP9.79□□□□□ -0.84
SHMT1-211ENST00000618902 SMARCA2P51531 1590 aa9.77□□□□□ -0.85
SHMT1-211ENST00000618902 SMARCA4P51532 1647 aa9.77□□□□□ -0.85
SHMT1-211ENST00000618902 MROH2BQ7Z745 1585 aa9.76□□□□□ -0.85
SHMT1-211ENST00000618902 AEBP2Q6ZN18 517 aaPredicted RBP9.74□□□□□ -0.85
SHMT1-211ENST00000618902 PEG3Q9GZU2 1588 aa9.74□□□□□ -0.85
SHMT1-211ENST00000618902 HMGXB3Q12766 1538 aa9.73□□□□□ -0.85
SHMT1-211ENST00000618902 ATAD2BQ9ULI0 1458 aa9.72□□□□□ -0.85
SHMT1-211ENST00000618902 RSF1Q96T23 1441 aaPredicted RBP9.69□□□□□ -0.86
SHMT1-211ENST00000618902 BAZ1BQ9UIG0 1483 aaKnown RBP9.64□□□□□ -0.87
SHMT1-211ENST00000618902 WIZO95785 1651 aa9.64□□□□□ -0.87
SHMT1-211ENST00000618902 LAMC3Q9Y6N6 1575 aa9.53□□□□□ -0.88
SHMT1-211ENST00000618902 TOP2AP11388 1531 aaKnown RBP9.52□□□□□ -0.88
SHMT1-211ENST00000618902 PDS5BQ9NTI5 1447 aa9.51□□□□□ -0.89
SHMT1-211ENST00000618902 CUX2O14529 1486 aa9.5□□□□□ -0.89
SHMT1-211ENST00000618902 SUPT5HO00267 1087 aaKnown RBP9.49□□□□□ -0.89
SHMT1-211ENST00000618902 CADPSQ9ULU8 1353 aa9.49□□□□□ -0.89
SHMT1-211ENST00000618902 ERCC6Q03468 1493 aa9.48□□□□□ -0.89
SHMT1-211ENST00000618902 NESP48681 1621 aa9.47□□□□□ -0.89
SHMT1-211ENST00000618902 CCDC88BA6NC98 1476 aa9.45□□□□□ -0.9
SHMT1-211ENST00000618902 CFTRP13569 1480 aa9.41□□□□□ -0.9
SHMT1-211ENST00000618902 CEP164Q9UPV0 1460 aa9.34□□□□□ -0.91
SHMT1-211ENST00000618902 MRC2Q9UBG0 1479 aa9.33□□□□□ -0.92
SHMT1-211ENST00000618902 FANCD2Q9BXW9 1451 aa9.32□□□□□ -0.92
SHMT1-211ENST00000618902 THOC2Q8NI27 1593 aaKnown RBP9.32□□□□□ -0.92
SHMT1-211ENST00000618902 ABCC8Q09428 1581 aa9.31□□□□□ -0.92
SHMT1-211ENST00000618902 KIF21AQ7Z4S6 1674 aa9.3□□□□□ -0.92
SHMT1-211ENST00000618902 WDR62O43379 1518 aa9.3□□□□□ -0.92
SHMT1-211ENST00000618902 PRDM2Q13029 1718 aa9.28□□□□□ -0.92
SHMT1-211ENST00000618902 DNAJC5Q9H3Z4 198 aa9.24□□□□□ -0.93
SHMT1-211ENST00000618902 URB2Q14146 1524 aaKnown RBP9.23□□□□□ -0.93
SHMT1-211ENST00000618902 IFT140Q96RY7 1462 aa9.18□□□□□ -0.94
SHMT1-211ENST00000618902 TOPBP1Q92547 1522 aa9.17□□□□□ -0.94
SHMT1-211ENST00000618902 DNMBPQ6XZF7 1577 aa9.16□□□□□ -0.94
SHMT1-211ENST00000618902 CUX1P39880 1505 aa9.15□□□□□ -0.94
SHMT1-211ENST00000618902 WDR97A6NE52 1622 aa9.14□□□□□ -0.95
SHMT1-211ENST00000618902 POLA1P09884 1462 aaPredicted RBP9.1□□□□□ -0.95
SHMT1-211ENST00000618902 SYNJ1O43426 1573 aa9.09□□□□□ -0.95
SHMT1-211ENST00000618902 FGD5Q6ZNL6 1462 aa9.08□□□□□ -0.96
SHMT1-211ENST00000618902 RAD54L2Q9Y4B4 1467 aa9.08□□□□□ -0.96
SHMT1-211ENST00000618902 WRNQ14191 1432 aaPredicted RBP eCLIP9.08□□□□□ -0.96
SHMT1-211ENST00000618902 OSCARQ8IYS5 282 aa9.08□□□□□ -0.96
SHMT1-211ENST00000618902 ZNF608Q9ULD9 1512 aaPredicted RBP9.07□□□□□ -0.96
SHMT1-211ENST00000618902 SOGA1O94964 1423 aa9.06□□□□□ -0.96
SHMT1-211ENST00000618902 TARBP1Q13395 1621 aaKnown RBP9.06□□□□□ -0.96
SHMT1-211ENST00000618902 TOP2BQ02880 1626 aa9.05□□□□□ -0.96
SHMT1-211ENST00000618902 BIVM-ERCC5R4GMW8 1640 aa9.04□□□□□ -0.96
SHMT1-211ENST00000618902 AQRO60306 1485 aaKnown RBP eCLIP9.02□□□□□ -0.96
SHMT1-211ENST00000618902 TDRD9Q8NDG6 1382 aaKnown RBP9.01□□□□□ -0.97
SHMT1-211ENST00000618902 ABCA10Q8WWZ4 1543 aa9□□□□□ -0.97
SHMT1-211ENST00000618902 MAGI1Q96QZ7 1491 aaPredicted RBP9□□□□□ -0.97
SHMT1-211ENST00000618902 EIF4G3O43432 1585 aaKnown RBP8.99□□□□□ -0.97
SHMT1-211ENST00000618902 GRIN2BQ13224 1484 aa8.99□□□□□ -0.97
SHMT1-211ENST00000618902 GAPVD1Q14C86 1478 aa8.96□□□□□ -0.98
SHMT1-211ENST00000618902 ABCA5Q8WWZ7 1642 aa8.94□□□□□ -0.98
SHMT1-211ENST00000618902 CHMP7Q8WUX9 453 aaPredicted RBP8.94□□□□□ -0.98
SHMT1-211ENST00000618902 SYNJ2O15056 1496 aa8.94□□□□□ -0.98
SHMT1-211ENST00000618902 ERICH3Q5RHP9 1530 aa8.92□□□□□ -0.98
SHMT1-211ENST00000618902 TRIM41Q8WV44 630 aa8.92□□□□□ -0.98
SHMT1-211ENST00000618902 RUSC2Q8N2Y8 1516 aa8.91□□□□□ -0.98
SHMT1-211ENST00000618902 SNAPC4Q5SXM2 1469 aa8.91□□□□□ -0.98
SHMT1-211ENST00000618902 IGF1RP08069 1367 aa8.89□□□□□ -0.99
SHMT1-211ENST00000618902 FHAD1B1AJZ9 1412 aa8.88□□□□□ -0.99
SHMT1-211ENST00000618902 PBRM1Q86U86 1689 aa8.88□□□□□ -0.99
SHMT1-211ENST00000618902 FBLN2P98095 1184 aa8.88□□□□□ -0.99
SHMT1-211ENST00000618902 KIF27Q86VH2 1401 aa8.87□□□□□ -0.99
SHMT1-211ENST00000618902 ADAMTS12P58397 1594 aa8.86□□□□□ -0.99
SHMT1-211ENST00000618902 CHD1O14646 1710 aa8.85□□□□□ -0.99
SHMT1-211ENST00000618902 ARHGEF11O15085 1522 aa8.85□□□□□ -0.99
SHMT1-211ENST00000618902 CLASP1Q7Z460 1538 aa8.84□□□□□ -0.99
SHMT1-211ENST00000618902 GRIN2AQ12879 1464 aa8.83□□□□□ -1
SHMT1-211ENST00000618902 NUP160Q12769 1436 aa8.83□□□□□ -1
SHMT1-211ENST00000618902 RIMBP3CA6NJZ7 1639 aa8.8□□□□□ -1
SHMT1-211ENST00000618902 RIMBP3BA6NNM3 1639 aa8.8□□□□□ -1
SHMT1-211ENST00000618902 RIMBP3Q9UFD9 1639 aa8.8□□□□□ -1
SHMT1-211ENST00000618902 CARMIL1Q5VZK9 1371 aa8.8□□□□□ -1
SHMT1-211ENST00000618902 CUL7Q14999 1698 aa8.8□□□□□ -1
SHMT1-211ENST00000618902 CEP170Q5SW79 1584 aa8.78□□□□□ -1
SHMT1-211ENST00000618902 FAM9AQ8IZU1 332 aaPredicted RBP8.78□□□□□ -1
SHMT1-211ENST00000618902 PHF23Q9BUL5 403 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms