RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 AQRO60306 1485 aaKnown RBP eCLIP21.99■■□□□ 1.115e-7■■■■■ 54.7
VRK3-217ENST00000599538 FHOD3Q2V2M9 1422 aa21.97■■□□□ 1.11
VRK3-217ENST00000599538 WDR62O43379 1518 aa21.94■■□□□ 1.1
VRK3-217ENST00000599538 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
VRK3-217ENST00000599538 ZNF608Q9ULD9 1512 aaPredicted RBP21.92■■□□□ 1.1
VRK3-217ENST00000599538 PCF11O94913 1555 aaKnown RBP21.91■■□□□ 1.1
VRK3-217ENST00000599538 TIAM1Q13009 1591 aa21.9■■□□□ 1.1
VRK3-217ENST00000599538 EFCAB5A4FU69 1503 aa21.89■■□□□ 1.1
VRK3-217ENST00000599538 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
VRK3-217ENST00000599538 ERCC6Q03468 1493 aa21.89■■□□□ 1.09
VRK3-217ENST00000599538 IFT140Q96RY7 1462 aa21.86■■□□□ 1.09
VRK3-217ENST00000599538 ATP1B4Q9UN42 357 aaPredicted RBP21.85■■□□□ 1.09
VRK3-217ENST00000599538 MAP3K1Q13233 1512 aa21.85■■□□□ 1.09
VRK3-217ENST00000599538 RRBP1Q9P2E9 1410 aaKnown RBP21.84■■□□□ 1.09
VRK3-217ENST00000599538 GRIN2BQ13224 1484 aa21.83■■□□□ 1.09
VRK3-217ENST00000599538 ADAMTS12P58397 1594 aa21.82■■□□□ 1.08
VRK3-217ENST00000599538 LRRC9Q6ZRR7 1453 aa21.81■■□□□ 1.08
VRK3-217ENST00000599538 THOC2Q8NI27 1593 aaKnown RBP21.81■■□□□ 1.08
VRK3-217ENST00000599538 SAMD9Q5K651 1589 aa21.8■■□□□ 1.08
VRK3-217ENST00000599538 CASKIN1Q8WXD9 1431 aa21.78■■□□□ 1.08
VRK3-217ENST00000599538 FYCO1Q9BQS8 1478 aa21.78■■□□□ 1.08
VRK3-217ENST00000599538 CFAP43Q8NDM7 1665 aa21.78■■□□□ 1.08
VRK3-217ENST00000599538 CCNB3Q8WWL7 1395 aa21.76■■□□□ 1.07
VRK3-217ENST00000599538 SNAPC4Q5SXM2 1469 aa21.75■■□□□ 1.07
VRK3-217ENST00000599538 FMN1Q68DA7 1419 aa21.74■■□□□ 1.07
VRK3-217ENST00000599538 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
VRK3-217ENST00000599538 PHLDB1Q86UU1 1377 aa21.73■■□□□ 1.07
VRK3-217ENST00000599538 IQGAP2Q13576 1575 aa21.69■■□□□ 1.06
VRK3-217ENST00000599538 ITGAEP38570 1179 aa21.69■■□□□ 1.06
VRK3-217ENST00000599538 LRRIQ1Q96JM4 1722 aa21.67■■□□□ 1.06
VRK3-217ENST00000599538 GRIN2AQ12879 1464 aa21.61■■□□□ 1.05
VRK3-217ENST00000599538 DHX57Q6P158 1386 aaKnown RBP21.58■■□□□ 1.04
VRK3-217ENST00000599538 FAM50AQ14320 339 aaKnown RBP21.57■■□□□ 1.04
VRK3-217ENST00000599538 KIAA0586Q9BVV6 1533 aa21.57■■□□□ 1.04
VRK3-217ENST00000599538 UGGT2Q9NYU1 1516 aa21.57■■□□□ 1.04
VRK3-217ENST00000599538 MTUS2Q5JR59 1369 aa21.55■■□□□ 1.04
VRK3-217ENST00000599538 MAGI1Q96QZ7 1491 aaPredicted RBP21.55■■□□□ 1.04
VRK3-217ENST00000599538 CHMP7Q8WUX9 453 aaPredicted RBP21.53■■□□□ 1.04
VRK3-217ENST00000599538 FBLN2P98095 1184 aa21.52■■□□□ 1.04
VRK3-217ENST00000599538 DISP1Q96F81 1524 aa21.52■■□□□ 1.03
VRK3-217ENST00000599538 MAGI3Q5TCQ9 1506 aa21.51■■□□□ 1.03
VRK3-217ENST00000599538 SYNJ2O15056 1496 aa21.51■■□□□ 1.03
VRK3-217ENST00000599538 CEP170Q5SW79 1584 aa21.5■■□□□ 1.03
VRK3-217ENST00000599538 ARID3CA6NKF2 412 aa21.49■■□□□ 1.03
VRK3-217ENST00000599538 RAB3GAP2Q9H2M9 1393 aa21.48■■□□□ 1.03
VRK3-217ENST00000599538 KIAA0556O60303 1618 aa21.48■■□□□ 1.03
VRK3-217ENST00000599538 FGD6Q6ZV73 1430 aa21.46■■□□□ 1.03
VRK3-217ENST00000599538 NCOA2Q15596 1464 aa21.46■■□□□ 1.03
VRK3-217ENST00000599538 HECW1Q76N89 1606 aa21.46■■□□□ 1.03
VRK3-217ENST00000599538 EPRSP07814 1512 aaKnown RBP21.45■■□□□ 1.02
VRK3-217ENST00000599538 CDK13Q14004 1512 aaKnown RBP21.45■■□□□ 1.02
VRK3-217ENST00000599538 CCDC18Q5T9S5 1454 aa21.43■■□□□ 1.02
VRK3-217ENST00000599538 EHBP1L1Q8N3D4 1523 aa21.43■■□□□ 1.02
VRK3-217ENST00000599538 SETD5Q9C0A6 1442 aa21.41■■□□□ 1.02
VRK3-217ENST00000599538 SUPT6HQ7KZ85 1726 aaKnown RBP21.41■■□□□ 1.02
VRK3-217ENST00000599538 CLSPNQ9HAW4 1339 aa21.41■■□□□ 1.02
VRK3-217ENST00000599538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.4■■□□□ 1.02
VRK3-217ENST00000599538 NUP160Q12769 1436 aa21.4■■□□□ 1.02
VRK3-217ENST00000599538 MYOM3Q5VTT5 1437 aa21.39■■□□□ 1.01
VRK3-217ENST00000599538 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
VRK3-217ENST00000599538 PTPRKQ15262 1439 aa21.36■■□□□ 1.01
VRK3-217ENST00000599538 JPH4Q96JJ6 628 aa21.35■■□□□ 1.01
VRK3-217ENST00000599538 NUP153P49790 1475 aaKnown RBP21.34■■□□□ 1.01
VRK3-217ENST00000599538 ZNF316A6NFI3 1004 aaPredicted RBP21.33■■□□□ 1.01
VRK3-217ENST00000599538 RAPGEF6Q8TEU7 1601 aa21.32■■□□□ 1
VRK3-217ENST00000599538 MAPKBP1O60336 1514 aa21.31■■□□□ 1
VRK3-217ENST00000599538 DIEXFQ68CQ4 756 aaKnown RBP21.3■■□□□ 1
VRK3-217ENST00000599538 PLB1Q6P1J6 1458 aa21.3■■□□□ 1
VRK3-217ENST00000599538 PTPN23Q9H3S7 1636 aa21.29■■□□□ 1
VRK3-217ENST00000599538 CARMIL2Q6F5E8 1435 aa21.24■□□□□ 0.99
VRK3-217ENST00000599538 TCOF1Q13428 1488 aaKnown RBP21.22■□□□□ 0.99
VRK3-217ENST00000599538 HFM1A2PYH4 1435 aa21.2■□□□□ 0.98
VRK3-217ENST00000599538 CHD1O14646 1710 aa21.2■□□□□ 0.98
VRK3-217ENST00000599538 PRG4Q92954 1404 aaPredicted RBP21.19■□□□□ 0.98
VRK3-217ENST00000599538 NAIPQ13075 1403 aa21.18■□□□□ 0.98
VRK3-217ENST00000599538 SIN3AQ96ST3 1273 aa21.17■□□□□ 0.98
VRK3-217ENST00000599538 CHIC2Q9UKJ5 165 aa21.17■□□□□ 0.98
VRK3-217ENST00000599538 MIA2Q96PC5 1412 aa21.17■□□□□ 0.98
VRK3-217ENST00000599538 RRP7BPQ9NSQ0 103 aa21.14■□□□□ 0.98
VRK3-217ENST00000599538 CDK11AQ9UQ88 783 aaPredicted RBP21.14■□□□□ 0.98
VRK3-217ENST00000599538 ZNF644Q9H582 1327 aaPredicted RBP21.13■□□□□ 0.97
VRK3-217ENST00000599538 TROQ12816 1431 aaPredicted RBP21.12■□□□□ 0.97
VRK3-217ENST00000599538 ABCA8O94911 1581 aa21.12■□□□□ 0.97
VRK3-217ENST00000599538 NEUROD1Q13562 356 aa21.11■□□□□ 0.97
VRK3-217ENST00000599538 KIF14Q15058 1648 aa21.09■□□□□ 0.97
VRK3-217ENST00000599538 ATP10BO94823 1461 aa21.07■□□□□ 0.96
VRK3-217ENST00000599538 UACAQ9BZF9 1416 aa21.07■□□□□ 0.96
VRK3-217ENST00000599538 KDM6BO15054 1643 aa21.06■□□□□ 0.96
VRK3-217ENST00000599538 PTPRGP23470 1445 aa21.05■□□□□ 0.96
VRK3-217ENST00000599538 DAPK1P53355 1430 aa21.03■□□□□ 0.96
VRK3-217ENST00000599538 GCC2Q8IWJ2 1684 aa21.03■□□□□ 0.96
VRK3-217ENST00000599538 GPATCH8Q9UKJ3 1502 aaKnown RBP21.02■□□□□ 0.96
VRK3-217ENST00000599538 ABCC5O15440 1437 aa21.02■□□□□ 0.96
VRK3-217ENST00000599538 ERCC6L2Q5T890 1561 aa21.02■□□□□ 0.96
VRK3-217ENST00000599538 ADCY10Q96PN6 1610 aa21.02■□□□□ 0.96
VRK3-217ENST00000599538 SHROOM2Q13796 1616 aa21.01■□□□□ 0.95
VRK3-217ENST00000599538 CFDP1Q9UEE9 299 aaPredicted RBP21.01■□□□□ 0.95
VRK3-217ENST00000599538 DNMT1P26358 1616 aaKnown RBP21■□□□□ 0.95
VRK3-217ENST00000599538 PLEKHD1A6NEE1 506 aa21■□□□□ 0.95
VRK3-217ENST00000599538 AKNAQ7Z591 1439 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms