RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 EEA1Q15075 1411 aa24.94■■□□□ 1.58
TRIM28-207ENST00000597136 PRXQ9BXM0 1461 aa24.93■■□□□ 1.58
TRIM28-207ENST00000597136 SHROOM2Q13796 1616 aa24.9■■□□□ 1.58
TRIM28-207ENST00000597136 ERCC6L2Q5T890 1561 aa24.87■■□□□ 1.57
TRIM28-207ENST00000597136 CTTNBP2Q8WZ74 1663 aa24.86■■□□□ 1.57
TRIM28-207ENST00000597136 KIAA0586Q9BVV6 1533 aa24.85■■□□□ 1.57
TRIM28-207ENST00000597136 JPH4Q96JJ6 628 aa24.84■■□□□ 1.57
TRIM28-207ENST00000597136 IQGAP2Q13576 1575 aa24.78■■□□□ 1.56
TRIM28-207ENST00000597136 KIF21BO75037 1637 aa24.77■■□□□ 1.56
TRIM28-207ENST00000597136 ARAP1Q96P48 1450 aa24.76■■□□□ 1.55
TRIM28-207ENST00000597136 PRG4Q92954 1404 aaPredicted RBP24.76■■□□□ 1.55
TRIM28-207ENST00000597136 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
TRIM28-207ENST00000597136 CYB5RLQ6IPT4 315 aa24.74■■□□□ 1.55
TRIM28-207ENST00000597136 UGGT2Q9NYU1 1516 aa24.63■■□□□ 1.53
TRIM28-207ENST00000597136 DISP1Q96F81 1524 aa24.61■■□□□ 1.53
TRIM28-207ENST00000597136 GOLGA3Q08378 1498 aa24.59■■□□□ 1.53
TRIM28-207ENST00000597136 UBTFP17480 764 aaKnown RBP24.57■■□□□ 1.52
TRIM28-207ENST00000597136 KIAA0556O60303 1618 aa24.55■■□□□ 1.52
TRIM28-207ENST00000597136 CARMIL2Q6F5E8 1435 aa24.55■■□□□ 1.52
TRIM28-207ENST00000597136 TTBK1Q5TCY1 1321 aaPredicted RBP24.55■■□□□ 1.52
TRIM28-207ENST00000597136 RANGAP1P46060 587 aaPredicted RBP24.54■■□□□ 1.52
TRIM28-207ENST00000597136 P3H3Q8IVL6 736 aa24.48■■□□□ 1.51
TRIM28-207ENST00000597136 TNIKQ9UKE5 1360 aa24.48■■□□□ 1.51
TRIM28-207ENST00000597136 PTPRGP23470 1445 aa24.47■■□□□ 1.51
TRIM28-207ENST00000597136 SAMD9Q5K651 1589 aa24.46■■□□□ 1.51
TRIM28-207ENST00000597136 ADCY10Q96PN6 1610 aa24.42■■□□□ 1.5
TRIM28-207ENST00000597136 LOC105371045A0A1W2PR82 267 aa24.41■■□□□ 1.5
TRIM28-207ENST00000597136 FHOD3Q2V2M9 1422 aa24.32■■□□□ 1.48
TRIM28-207ENST00000597136 EFCAB5A4FU69 1503 aa24.31■■□□□ 1.48
TRIM28-207ENST00000597136 PLB1Q6P1J6 1458 aa24.3■■□□□ 1.48
TRIM28-207ENST00000597136 UACAQ9BZF9 1416 aa24.3■■□□□ 1.48
TRIM28-207ENST00000597136 ARHGAP35Q9NRY4 1499 aa24.3■■□□□ 1.48
TRIM28-207ENST00000597136 ABCA8O94911 1581 aa24.27■■□□□ 1.48
TRIM28-207ENST00000597136 ABCC2Q92887 1545 aa24.26■■□□□ 1.47
TRIM28-207ENST00000597136 UHRF1BP1LA0JNW5 1464 aa24.25■■□□□ 1.47
TRIM28-207ENST00000597136 NPM1P06748 294 aaKnown RBP eCLIP24.22■■□□□ 1.47
TRIM28-207ENST00000597136 ZCCHC11Q5TAX3 1644 aaKnown RBP24.21■■□□□ 1.47
TRIM28-207ENST00000597136 RAPGEF6Q8TEU7 1601 aa24.21■■□□□ 1.47
TRIM28-207ENST00000597136 CLIP1P30622 1438 aa24.18■■□□□ 1.46
TRIM28-207ENST00000597136 KIF13AQ9H1H9 1805 aa24.17■■□□□ 1.46
TRIM28-207ENST00000597136 KDM5BQ9UGL1 1544 aa24.16■■□□□ 1.46
TRIM28-207ENST00000597136 ARID3CA6NKF2 412 aa24.15■■□□□ 1.46
TRIM28-207ENST00000597136 TRHP20396 242 aaPredicted RBP24.15■■□□□ 1.46
TRIM28-207ENST00000597136 MAPKBP1O60336 1514 aa24.13■■□□□ 1.45
TRIM28-207ENST00000597136 CEP162Q5TB80 1403 aa24.13■■□□□ 1.45
TRIM28-207ENST00000597136 LRRIQ1Q96JM4 1722 aa24.1■■□□□ 1.45
TRIM28-207ENST00000597136 ATP10BO94823 1461 aa24.09■■□□□ 1.45
TRIM28-207ENST00000597136 NUP153P49790 1475 aaKnown RBP24.09■■□□□ 1.45
TRIM28-207ENST00000597136 FMN1Q68DA7 1419 aa24.07■■□□□ 1.44
TRIM28-207ENST00000597136 ASXL2Q76L83 1435 aa24.07■■□□□ 1.44
TRIM28-207ENST00000597136 ATP1B4Q9UN42 357 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-207ENST00000597136 DIP2BQ9P265 1576 aa24.02■■□□□ 1.44
TRIM28-207ENST00000597136 TSPOAP1O95153 1857 aa24.02■■□□□ 1.44
TRIM28-207ENST00000597136 PCF11O94913 1555 aaKnown RBP24.01■■□□□ 1.43
TRIM28-207ENST00000597136 ABCC10Q5T3U5 1492 aa24.01■■□□□ 1.43
TRIM28-207ENST00000597136 HECW1Q76N89 1606 aa23.99■■□□□ 1.43
TRIM28-207ENST00000597136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-207ENST00000597136 FAM69CQ0P6D2 419 aa23.99■■□□□ 1.43
TRIM28-207ENST00000597136 HNRNPUL2Q1KMD3 747 aaKnown RBP23.99■■□□□ 1.43
TRIM28-207ENST00000597136 CDK13Q14004 1512 aaKnown RBP23.98■■□□□ 1.43
TRIM28-207ENST00000597136 WDR7Q9Y4E6 1490 aa23.95■■□□□ 1.42
TRIM28-207ENST00000597136 EPRSP07814 1512 aaKnown RBP23.94■■□□□ 1.42
TRIM28-207ENST00000597136 CASKIN1Q8WXD9 1431 aa23.94■■□□□ 1.42
TRIM28-207ENST00000597136 KCNH8Q96L42 1107 aa23.94■■□□□ 1.42
TRIM28-207ENST00000597136 GLI2P10070 1586 aa23.89■■□□□ 1.41
TRIM28-207ENST00000597136 FYCO1Q9BQS8 1478 aa23.88■■□□□ 1.41
TRIM28-207ENST00000597136 MAP3K4Q9Y6R4 1608 aa23.86■■□□□ 1.41
TRIM28-207ENST00000597136 PPRC1Q5VV67 1664 aaKnown RBP23.85■■□□□ 1.41
TRIM28-207ENST00000597136 PLEKHD1A6NEE1 506 aa23.85■■□□□ 1.41
TRIM28-207ENST00000597136 CFAP43Q8NDM7 1665 aa23.82■■□□□ 1.4
TRIM28-207ENST00000597136 VPS8Q8N3P4 1428 aa23.8■■□□□ 1.4
TRIM28-207ENST00000597136 CCDC18Q5T9S5 1454 aa23.78■■□□□ 1.4
TRIM28-207ENST00000597136 ABCA9Q8IUA7 1624 aa23.78■■□□□ 1.4
TRIM28-207ENST00000597136 MAGI3Q5TCQ9 1506 aa23.78■■□□□ 1.4
TRIM28-207ENST00000597136 KIF14Q15058 1648 aa23.75■■□□□ 1.39
TRIM28-207ENST00000597136 CDK11AQ9UQ88 783 aaPredicted RBP23.74■■□□□ 1.39
TRIM28-207ENST00000597136 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.73■■□□□ 1.39
TRIM28-207ENST00000597136 CD109Q6YHK3 1445 aa23.72■■□□□ 1.39
TRIM28-207ENST00000597136 TTC37Q6PGP7 1564 aa23.72■■□□□ 1.39
TRIM28-207ENST00000597136 TROQ12816 1431 aaPredicted RBP23.71■■□□□ 1.39
TRIM28-207ENST00000597136 MYO5CQ9NQX4 1742 aa23.66■■□□□ 1.38
TRIM28-207ENST00000597136 TIAM1Q13009 1591 aa23.66■■□□□ 1.38
TRIM28-207ENST00000597136 CDC42BPAQ5VT25 1732 aa23.62■■□□□ 1.37
TRIM28-207ENST00000597136 CDC42BPBQ9Y5S2 1711 aa23.62■■□□□ 1.37
TRIM28-207ENST00000597136 TEX14Q8IWB6 1497 aa23.6■■□□□ 1.37
TRIM28-207ENST00000597136 MTUS2Q5JR59 1369 aa23.59■■□□□ 1.37
TRIM28-207ENST00000597136 KDM6BO15054 1643 aa23.59■■□□□ 1.37
TRIM28-207ENST00000597136 COL17A1Q9UMD9 1497 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-207ENST00000597136 KANK4Q5T7N3 995 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-207ENST00000597136 MAP3K1Q13233 1512 aa23.55■■□□□ 1.36
TRIM28-207ENST00000597136 EHBP1L1Q8N3D4 1523 aa23.55■■□□□ 1.36
TRIM28-207ENST00000597136 PLCH2O75038 1416 aa23.54■■□□□ 1.36
TRIM28-207ENST00000597136 LRRC9Q6ZRR7 1453 aa23.53■■□□□ 1.36
TRIM28-207ENST00000597136 SUPT6HQ7KZ85 1726 aaKnown RBP23.53■■□□□ 1.36
TRIM28-207ENST00000597136 PREX2Q70Z35 1606 aa23.52■■□□□ 1.36
TRIM28-207ENST00000597136 FANCAO15360 1455 aa23.5■■□□□ 1.35
TRIM28-207ENST00000597136 APLP2Q06481 763 aa23.49■■□□□ 1.35
TRIM28-207ENST00000597136 NEO1Q92859 1461 aa23.48■■□□□ 1.35
TRIM28-207ENST00000597136 CFAP74Q9C0B2 1584 aa23.48■■□□□ 1.35
TRIM28-207ENST00000597136 AKNAQ7Z591 1439 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms