RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NISCHQ9Y2I1 1504 aa36.03■■■■□ 3.36
TRIM28-207ENST00000597136 CCDC180Q9P1Z9 1646 aa31.96■■■□□ 2.71
TRIM28-207ENST00000597136 ABCC9O60706 1549 aa31.11■■■□□ 2.57
TRIM28-207ENST00000597136 DCAF8L2P0C7V8 631 aa30.11■■■□□ 2.41
TRIM28-207ENST00000597136 ZCCHC6Q5VYS8 1495 aaKnown RBP30.03■■■□□ 2.4
TRIM28-207ENST00000597136 NACADO15069 1562 aa29.95■■■□□ 2.38
TRIM28-207ENST00000597136 RB1CC1Q8TDY2 1594 aa29.95■■■□□ 2.38
TRIM28-207ENST00000597136 MYO15BQ96JP2 1530 aa29.77■■■□□ 2.36
TRIM28-207ENST00000597136 DCAF1Q9Y4B6 1507 aa29.75■■■□□ 2.35
TRIM28-207ENST00000597136 UNC13AQ9UPW8 1703 aa29.53■■■□□ 2.32
TRIM28-207ENST00000597136 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
TRIM28-207ENST00000597136 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.25
TRIM28-207ENST00000597136 PABPN1Q86U42 306 aaKnown RBP eCLIP29.13■■■□□ 2.251e-6■■□□□ 14.2
TRIM28-207ENST00000597136 SHROOM4Q9ULL8 1493 aa28.67■■■□□ 2.18
TRIM28-207ENST00000597136 DNAJC5BQ9UF47 199 aa28.45■■■□□ 2.15
TRIM28-207ENST00000597136 EIF4G1Q04637 1599 aaKnown RBP28.29■■■□□ 2.12
TRIM28-207ENST00000597136 CC2D2AQ9P2K1 1620 aa28.18■■■□□ 2.1
TRIM28-207ENST00000597136 CECR2Q9BXF3 1484 aa28.12■■■□□ 2.09
TRIM28-207ENST00000597136 SMARCA4P51532 1647 aa27.95■■■□□ 2.07
TRIM28-207ENST00000597136 BAZ1AQ9NRL2 1556 aaPredicted RBP27.88■■■□□ 2.05
TRIM28-207ENST00000597136 MROH2BQ7Z745 1585 aa27.83■■■□□ 2.04
TRIM28-207ENST00000597136 ATAD2BQ9ULI0 1458 aa27.7■■■□□ 2.03
TRIM28-207ENST00000597136 SMARCA2P51531 1590 aa27.65■■■□□ 2.02
TRIM28-207ENST00000597136 NCAPD3P42695 1498 aa27.63■■■□□ 2.01
TRIM28-207ENST00000597136 PEG3Q9GZU2 1588 aa27.62■■■□□ 2.01
TRIM28-207ENST00000597136 WIZO95785 1651 aa27.61■■■□□ 2.01
TRIM28-207ENST00000597136 RSF1Q96T23 1441 aaPredicted RBP27.53■■■□□ 2
TRIM28-207ENST00000597136 HMGXB3Q12766 1538 aa27.5■■□□□ 1.99
TRIM28-207ENST00000597136 BAZ1BQ9UIG0 1483 aaKnown RBP27.47■■□□□ 1.99
TRIM28-207ENST00000597136 TOP2AP11388 1531 aaKnown RBP27.19■■□□□ 1.94
TRIM28-207ENST00000597136 SUPT5HO00267 1087 aaKnown RBP27.06■■□□□ 1.92
TRIM28-207ENST00000597136 NESP48681 1621 aa27.03■■□□□ 1.92
TRIM28-207ENST00000597136 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
TRIM28-207ENST00000597136 LAMC3Q9Y6N6 1575 aa26.89■■□□□ 1.89
TRIM28-207ENST00000597136 CADPSQ9ULU8 1353 aa26.84■■□□□ 1.89
TRIM28-207ENST00000597136 KIF21AQ7Z4S6 1674 aa26.77■■□□□ 1.88
TRIM28-207ENST00000597136 ERCC6Q03468 1493 aa26.73■■□□□ 1.87
TRIM28-207ENST00000597136 CFTRP13569 1480 aa26.72■■□□□ 1.87
TRIM28-207ENST00000597136 PRDM2Q13029 1718 aa26.7■■□□□ 1.87
TRIM28-207ENST00000597136 PDS5BQ9NTI5 1447 aa26.65■■□□□ 1.86
TRIM28-207ENST00000597136 FANCD2Q9BXW9 1451 aa26.55■■□□□ 1.84
TRIM28-207ENST00000597136 THOC2Q8NI27 1593 aaKnown RBP26.53■■□□□ 1.84
TRIM28-207ENST00000597136 CEP164Q9UPV0 1460 aa26.48■■□□□ 1.83
TRIM28-207ENST00000597136 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.81
TRIM28-207ENST00000597136 CUX2O14529 1486 aa26.33■■□□□ 1.81
TRIM28-207ENST00000597136 URB2Q14146 1524 aaKnown RBP26.32■■□□□ 1.8
TRIM28-207ENST00000597136 WDR62O43379 1518 aa26.31■■□□□ 1.8
TRIM28-207ENST00000597136 TOPBP1Q92547 1522 aa26.17■■□□□ 1.78
TRIM28-207ENST00000597136 DNMBPQ6XZF7 1577 aa26.15■■□□□ 1.78
TRIM28-207ENST00000597136 ABCC8Q09428 1581 aa26.1■■□□□ 1.77
TRIM28-207ENST00000597136 CUX1P39880 1505 aa26.08■■□□□ 1.77
TRIM28-207ENST00000597136 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.75
TRIM28-207ENST00000597136 SYNJ1O43426 1573 aa25.94■■□□□ 1.74
TRIM28-207ENST00000597136 FGD5Q6ZNL6 1462 aa25.93■■□□□ 1.74
TRIM28-207ENST00000597136 WRNQ14191 1432 aaPredicted RBP eCLIP25.92■■□□□ 1.74
TRIM28-207ENST00000597136 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
TRIM28-207ENST00000597136 BIVM-ERCC5R4GMW8 1640 aa25.92■■□□□ 1.74
TRIM28-207ENST00000597136 RAD54L2Q9Y4B4 1467 aa25.9■■□□□ 1.74
TRIM28-207ENST00000597136 TOP2BQ02880 1626 aa25.9■■□□□ 1.74
TRIM28-207ENST00000597136 IFT140Q96RY7 1462 aa25.89■■□□□ 1.74
TRIM28-207ENST00000597136 ZNF608Q9ULD9 1512 aaPredicted RBP25.87■■□□□ 1.73
TRIM28-207ENST00000597136 SOGA1O94964 1423 aa25.85■■□□□ 1.73
TRIM28-207ENST00000597136 WDR97A6NE52 1622 aa25.78■■□□□ 1.72
TRIM28-207ENST00000597136 EIF4G3O43432 1585 aaKnown RBP25.75■■□□□ 1.71
TRIM28-207ENST00000597136 AQRO60306 1485 aaKnown RBP eCLIP25.74■■□□□ 1.711e-11■■■■■ 31.9
TRIM28-207ENST00000597136 TDRD9Q8NDG6 1382 aaKnown RBP25.72■■□□□ 1.71
TRIM28-207ENST00000597136 ABCA10Q8WWZ4 1543 aa25.65■■□□□ 1.7
TRIM28-207ENST00000597136 PBRM1Q86U86 1689 aa25.6■■□□□ 1.69
TRIM28-207ENST00000597136 ABCA5Q8WWZ7 1642 aa25.59■■□□□ 1.69
TRIM28-207ENST00000597136 GAPVD1Q14C86 1478 aa25.55■■□□□ 1.68
TRIM28-207ENST00000597136 CHD1O14646 1710 aa25.5■■□□□ 1.67
TRIM28-207ENST00000597136 GRIN2BQ13224 1484 aa25.49■■□□□ 1.67
TRIM28-207ENST00000597136 TRIM41Q8WV44 630 aa25.48■■□□□ 1.67
TRIM28-207ENST00000597136 SNAPC4Q5SXM2 1469 aa25.46■■□□□ 1.67
TRIM28-207ENST00000597136 MAGI1Q96QZ7 1491 aaPredicted RBP25.38■■□□□ 1.65
TRIM28-207ENST00000597136 FBLN2P98095 1184 aa25.38■■□□□ 1.65
TRIM28-207ENST00000597136 DNAJC5Q9H3Z4 198 aa25.37■■□□□ 1.65
TRIM28-207ENST00000597136 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
TRIM28-207ENST00000597136 ERICH3Q5RHP9 1530 aa25.34■■□□□ 1.65
TRIM28-207ENST00000597136 RUSC2Q8N2Y8 1516 aa25.34■■□□□ 1.65
TRIM28-207ENST00000597136 KIF27Q86VH2 1401 aa25.34■■□□□ 1.65
TRIM28-207ENST00000597136 OSCARQ8IYS5 282 aa25.33■■□□□ 1.65
TRIM28-207ENST00000597136 ADAMTS12P58397 1594 aa25.31■■□□□ 1.64
TRIM28-207ENST00000597136 CHMP7Q8WUX9 453 aaPredicted RBP25.3■■□□□ 1.64
TRIM28-207ENST00000597136 SYNJ2O15056 1496 aa25.3■■□□□ 1.64
TRIM28-207ENST00000597136 IGF1RP08069 1367 aa25.27■■□□□ 1.64
TRIM28-207ENST00000597136 FHAD1B1AJZ9 1412 aa25.22■■□□□ 1.63
TRIM28-207ENST00000597136 CUL7Q14999 1698 aa25.19■■□□□ 1.62
TRIM28-207ENST00000597136 GRIN2AQ12879 1464 aa25.18■■□□□ 1.62
TRIM28-207ENST00000597136 CEP170Q5SW79 1584 aa25.11■■□□□ 1.61
TRIM28-207ENST00000597136 CARMIL1Q5VZK9 1371 aa25.11■■□□□ 1.61
TRIM28-207ENST00000597136 CLASP1Q7Z460 1538 aa25.1■■□□□ 1.61
TRIM28-207ENST00000597136 FAM9AQ8IZU1 332 aaPredicted RBP25.05■■□□□ 1.6
TRIM28-207ENST00000597136 NUP160Q12769 1436 aa25.04■■□□□ 1.6
TRIM28-207ENST00000597136 RIMBP3CA6NJZ7 1639 aa24.99■■□□□ 1.59
TRIM28-207ENST00000597136 RIMBP3BA6NNM3 1639 aa24.99■■□□□ 1.59
TRIM28-207ENST00000597136 RIMBP3Q9UFD9 1639 aa24.99■■□□□ 1.59
TRIM28-207ENST00000597136 CSRNP3Q8WYN3 585 aa24.98■■□□□ 1.59
TRIM28-207ENST00000597136 RAPGEF2Q9Y4G8 1499 aa24.97■■□□□ 1.59
TRIM28-207ENST00000597136 ARHGEF11O15085 1522 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms