RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 ARHGAP35Q9NRY4 1499 aa32.95■■■□□ 2.87
PNKP-203ENST00000593946 ARAP1Q96P48 1450 aa32.92■■■□□ 2.86
PNKP-203ENST00000593946 CHMP7Q8WUX9 453 aaPredicted RBP32.91■■■□□ 2.86
PNKP-203ENST00000593946 IQGAP2Q13576 1575 aa32.89■■■□□ 2.86
PNKP-203ENST00000593946 EFCAB5A4FU69 1503 aa32.88■■■□□ 2.85
PNKP-203ENST00000593946 VPS8Q8N3P4 1428 aa32.86■■■□□ 2.85
PNKP-203ENST00000593946 CEP170Q5SW79 1584 aa32.86■■■□□ 2.85
PNKP-203ENST00000593946 CHD1O14646 1710 aa32.85■■■□□ 2.85
PNKP-203ENST00000593946 KIAA0586Q9BVV6 1533 aa32.83■■■□□ 2.85
PNKP-203ENST00000593946 NUP160Q12769 1436 aa32.82■■■□□ 2.84
PNKP-203ENST00000593946 SAMD9Q5K651 1589 aa32.81■■■□□ 2.84
PNKP-203ENST00000593946 FBLN2P98095 1184 aa32.81■■■□□ 2.84
PNKP-203ENST00000593946 UGGT2Q9NYU1 1516 aa32.73■■■□□ 2.83
PNKP-203ENST00000593946 FHOD3Q2V2M9 1422 aa32.66■■■□□ 2.82
PNKP-203ENST00000593946 P3H3Q8IVL6 736 aa32.62■■■□□ 2.81
PNKP-203ENST00000593946 KIAA0556O60303 1618 aa32.56■■■□□ 2.8
PNKP-203ENST00000593946 DISP1Q96F81 1524 aa32.56■■■□□ 2.8
PNKP-203ENST00000593946 FMN1Q68DA7 1419 aa32.53■■■□□ 2.8
PNKP-203ENST00000593946 PCF11O94913 1555 aaKnown RBP32.53■■■□□ 2.8
PNKP-203ENST00000593946 JPH4Q96JJ6 628 aa32.47■■■□□ 2.79
PNKP-203ENST00000593946 SHROOM2Q13796 1616 aa32.46■■■□□ 2.79
PNKP-203ENST00000593946 FYCO1Q9BQS8 1478 aa32.46■■■□□ 2.79
PNKP-203ENST00000593946 CLASP1Q7Z460 1538 aa32.45■■■□□ 2.79
PNKP-203ENST00000593946 CASKIN1Q8WXD9 1431 aa32.44■■■□□ 2.78
PNKP-203ENST00000593946 PPARGC1BQ86YN6 1023 aaKnown RBP32.43■■■□□ 2.78
PNKP-203ENST00000593946 APLP2Q06481 763 aa32.42■■■□□ 2.78
PNKP-203ENST00000593946 CARMIL2Q6F5E8 1435 aa32.4■■■□□ 2.78
PNKP-203ENST00000593946 MAP3K1Q13233 1512 aa32.38■■■□□ 2.77
PNKP-203ENST00000593946 CFAP43Q8NDM7 1665 aa32.35■■■□□ 2.77
PNKP-203ENST00000593946 TIAM1Q13009 1591 aa32.35■■■□□ 2.77
PNKP-203ENST00000593946 PRG4Q92954 1404 aaPredicted RBP32.32■■■□□ 2.76
PNKP-203ENST00000593946 LRRIQ1Q96JM4 1722 aa32.31■■■□□ 2.76
PNKP-203ENST00000593946 TRIM26Q12899 539 aaPredicted RBP32.29■■■□□ 2.76
PNKP-203ENST00000593946 HECW1Q76N89 1606 aa32.27■■■□□ 2.76
PNKP-203ENST00000593946 RAPGEF6Q8TEU7 1601 aa32.22■■■□□ 2.75
PNKP-203ENST00000593946 TTBK1Q5TCY1 1321 aaPredicted RBP32.22■■■□□ 2.75
PNKP-203ENST00000593946 KANK4Q5T7N3 995 aaPredicted RBP32.21■■■□□ 2.75
PNKP-203ENST00000593946 ATP1B4Q9UN42 357 aaPredicted RBP32.2■■■□□ 2.75
PNKP-203ENST00000593946 ERCC6L2Q5T890 1561 aa32.18■■■□□ 2.74
PNKP-203ENST00000593946 PCGF6Q9BYE7 350 aa32.17■■■□□ 2.74
PNKP-203ENST00000593946 CCDC18Q5T9S5 1454 aa32.16■■■□□ 2.74
PNKP-203ENST00000593946 LRRC9Q6ZRR7 1453 aa32.16■■■□□ 2.74
PNKP-203ENST00000593946 OSCARQ8IYS5 282 aa32.14■■■□□ 2.74
PNKP-203ENST00000593946 EPRSP07814 1512 aaKnown RBP32.12■■■□□ 2.73
PNKP-203ENST00000593946 PLB1Q6P1J6 1458 aa32.12■■■□□ 2.73
PNKP-203ENST00000593946 ABCA8O94911 1581 aa32.11■■■□□ 2.73
PNKP-203ENST00000593946 NUP153P49790 1475 aaKnown RBP32.11■■■□□ 2.73
PNKP-203ENST00000593946 PTPRGP23470 1445 aa32.08■■■□□ 2.73
PNKP-203ENST00000593946 CDK13Q14004 1512 aaKnown RBP32.04■■■□□ 2.72
PNKP-203ENST00000593946 EHBP1L1Q8N3D4 1523 aa31.98■■■□□ 2.71
PNKP-203ENST00000593946 MAGI3Q5TCQ9 1506 aa31.97■■■□□ 2.71
PNKP-203ENST00000593946 MTUS2Q5JR59 1369 aa31.95■■■□□ 2.71
PNKP-203ENST00000593946 UACAQ9BZF9 1416 aa31.92■■■□□ 2.7
PNKP-203ENST00000593946 SUPT6HQ7KZ85 1726 aaKnown RBP31.9■■■□□ 2.7
PNKP-203ENST00000593946 ARID3CA6NKF2 412 aa31.89■■■□□ 2.69
PNKP-203ENST00000593946 ABCC2Q92887 1545 aa31.87■■■□□ 2.69
PNKP-203ENST00000593946 RRBP1Q9P2E9 1410 aaKnown RBP31.85■■■□□ 2.69
PNKP-203ENST00000593946 ATP10BO94823 1461 aa31.84■■■□□ 2.69
PNKP-203ENST00000593946 PHLDB1Q86UU1 1377 aa31.83■■■□□ 2.69
PNKP-203ENST00000593946 ARHGEF11O15085 1522 aa31.81■■■□□ 2.68
PNKP-203ENST00000593946 UHRF1BP1LA0JNW5 1464 aa31.81■■■□□ 2.68
PNKP-203ENST00000593946 NCOA2Q15596 1464 aa31.8■■■□□ 2.68
PNKP-203ENST00000593946 CDK11AQ9UQ88 783 aaPredicted RBP31.78■■■□□ 2.68
PNKP-203ENST00000593946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.77■■■□□ 2.68
PNKP-203ENST00000593946 HNRNPUL2Q1KMD3 747 aaKnown RBP31.77■■■□□ 2.68
PNKP-203ENST00000593946 TROQ12816 1431 aaPredicted RBP31.75■■■□□ 2.67
PNKP-203ENST00000593946 ADCY10Q96PN6 1610 aa31.74■■■□□ 2.67
PNKP-203ENST00000593946 CCNB3Q8WWL7 1395 aa31.73■■■□□ 2.67
PNKP-203ENST00000593946 KDM5BQ9UGL1 1544 aa31.68■■■□□ 2.66
PNKP-203ENST00000593946 ZCCHC11Q5TAX3 1644 aaKnown RBP31.68■■■□□ 2.66
PNKP-203ENST00000593946 MYOM3Q5VTT5 1437 aa31.67■■■□□ 2.66
PNKP-203ENST00000593946 KIF14Q15058 1648 aa31.65■■■□□ 2.66
PNKP-203ENST00000593946 FGD6Q6ZV73 1430 aa31.64■■■□□ 2.66
PNKP-203ENST00000593946 PLEKHD1A6NEE1 506 aa31.63■■■□□ 2.65
PNKP-203ENST00000593946 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.58■■■□□ 2.65
PNKP-203ENST00000593946 RIMBP3CA6NJZ7 1639 aa31.57■■■□□ 2.64
PNKP-203ENST00000593946 RIMBP3BA6NNM3 1639 aa31.57■■■□□ 2.64
PNKP-203ENST00000593946 RIMBP3Q9UFD9 1639 aa31.57■■■□□ 2.64
PNKP-203ENST00000593946 PTPN23Q9H3S7 1636 aa31.54■■■□□ 2.64
PNKP-203ENST00000593946 ITSN2Q9NZM3 1697 aa31.53■■■□□ 2.64
PNKP-203ENST00000593946 MIA2Q96PC5 1412 aa31.52■■■□□ 2.64
PNKP-203ENST00000593946 ABCC10Q5T3U5 1492 aa31.52■■■□□ 2.64
PNKP-203ENST00000593946 TCOF1Q13428 1488 aaKnown RBP31.49■■■□□ 2.63
PNKP-203ENST00000593946 CDC42BPAQ5VT25 1732 aa31.48■■■□□ 2.63
PNKP-203ENST00000593946 FAM50AQ14320 339 aaKnown RBP31.47■■■□□ 2.63
PNKP-203ENST00000593946 GPATCH8Q9UKJ3 1502 aaKnown RBP31.45■■■□□ 2.63
PNKP-203ENST00000593946 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.39■■■□□ 2.62
PNKP-203ENST00000593946 TTC37Q6PGP7 1564 aa31.39■■■□□ 2.62
PNKP-203ENST00000593946 WDR7Q9Y4E6 1490 aa31.38■■■□□ 2.61
PNKP-203ENST00000593946 PREX2Q70Z35 1606 aa31.36■■■□□ 2.61
PNKP-203ENST00000593946 CDC42BPBQ9Y5S2 1711 aa31.34■■■□□ 2.61
PNKP-203ENST00000593946 ITGAEP38570 1179 aa31.34■■■□□ 2.61
PNKP-203ENST00000593946 MYO5CQ9NQX4 1742 aa31.33■■■□□ 2.61
PNKP-203ENST00000593946 ASXL2Q76L83 1435 aa31.31■■■□□ 2.6
PNKP-203ENST00000593946 CFDP1Q9UEE9 299 aaPredicted RBP31.31■■■□□ 2.6
PNKP-203ENST00000593946 NPM1P06748 294 aaKnown RBP eCLIP31.29■■■□□ 2.6
PNKP-203ENST00000593946 CAMSAP2Q08AD1 1489 aa31.29■■■□□ 2.6
PNKP-203ENST00000593946 CYB5RLQ6IPT4 315 aa31.28■■■□□ 2.6
PNKP-203ENST00000593946 KCNH8Q96L42 1107 aa31.27■■■□□ 2.6
PNKP-203ENST00000593946 DNMT1P26358 1616 aaKnown RBP31.26■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms