RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 NISCHQ9Y2I1 1504 aa47.93■■■■■ 5.26
PNKP-203ENST00000593946 CCDC180Q9P1Z9 1646 aa42.02■■■■■ 4.32
PNKP-203ENST00000593946 ZCCHC6Q5VYS8 1495 aaKnown RBP40.23■■■■■ 4.03
PNKP-203ENST00000593946 ABCC9O60706 1549 aa39.81■■■■□ 3.96
PNKP-203ENST00000593946 DCAF1Q9Y4B6 1507 aa39.69■■■■□ 3.94
PNKP-203ENST00000593946 DCAF8L2P0C7V8 631 aa39.46■■■■□ 3.91
PNKP-203ENST00000593946 MYO15BQ96JP2 1530 aa39.33■■■■□ 3.89
PNKP-203ENST00000593946 NACADO15069 1562 aa39.14■■■■□ 3.86
PNKP-203ENST00000593946 RB1CC1Q8TDY2 1594 aa38.86■■■■□ 3.81
PNKP-203ENST00000593946 SHROOM4Q9ULL8 1493 aa38.76■■■■□ 3.79
PNKP-203ENST00000593946 SCRIBQ14160 1630 aa38.5■■■■□ 3.75
PNKP-203ENST00000593946 UNC13AQ9UPW8 1703 aa38.16■■■■□ 3.7
PNKP-203ENST00000593946 BICRAQ9NZM4 1560 aa37.71■■■■□ 3.63
PNKP-203ENST00000593946 PABPN1Q86U42 306 aaKnown RBP eCLIP37.41■■■■□ 3.585e-6■■■■□ 22.2
PNKP-203ENST00000593946 CECR2Q9BXF3 1484 aa37.22■■■■□ 3.55
PNKP-203ENST00000593946 SUPT5HO00267 1087 aaKnown RBP37.13■■■■□ 3.54
PNKP-203ENST00000593946 BAZ1AQ9NRL2 1556 aaPredicted RBP37.04■■■■□ 3.52
PNKP-203ENST00000593946 RSF1Q96T23 1441 aaPredicted RBP37.04■■■■□ 3.52
PNKP-203ENST00000593946 MROH2BQ7Z745 1585 aa37■■■■□ 3.51
PNKP-203ENST00000593946 SMARCA4P51532 1647 aa36.93■■■■□ 3.5
PNKP-203ENST00000593946 WIZO95785 1651 aa36.71■■■■□ 3.47
PNKP-203ENST00000593946 EIF4G1Q04637 1599 aaKnown RBP36.56■■■■□ 3.44
PNKP-203ENST00000593946 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
PNKP-203ENST00000593946 SMARCA2P51531 1590 aa36.35■■■■□ 3.41
PNKP-203ENST00000593946 ATAD2BQ9ULI0 1458 aa36.34■■■■□ 3.41
PNKP-203ENST00000593946 TOP2AP11388 1531 aaKnown RBP36.33■■■■□ 3.41
PNKP-203ENST00000593946 BAZ1BQ9UIG0 1483 aaKnown RBP36.12■■■■□ 3.37
PNKP-203ENST00000593946 CC2D2AQ9P2K1 1620 aa36.09■■■■□ 3.37
PNKP-203ENST00000593946 NCAPD3P42695 1498 aa36.09■■■■□ 3.37
PNKP-203ENST00000593946 HMGXB3Q12766 1538 aa36.07■■■■□ 3.36
PNKP-203ENST00000593946 CCDC88BA6NC98 1476 aa35.9■■■■□ 3.34
PNKP-203ENST00000593946 CHIC1Q5VXU3 224 aa35.46■■■■□ 3.27
PNKP-203ENST00000593946 DNAJC5BQ9UF47 199 aa35.3■■■■□ 3.24
PNKP-203ENST00000593946 CFTRP13569 1480 aa35.22■■■■□ 3.23
PNKP-203ENST00000593946 PRDM2Q13029 1718 aa35.17■■■■□ 3.22
PNKP-203ENST00000593946 CADPSQ9ULU8 1353 aa35.11■■■■□ 3.21
PNKP-203ENST00000593946 ABCC8Q09428 1581 aa35.07■■■■□ 3.2
PNKP-203ENST00000593946 TRIM41Q8WV44 630 aa34.96■■■■□ 3.19
PNKP-203ENST00000593946 LAMC3Q9Y6N6 1575 aa34.94■■■■□ 3.18
PNKP-203ENST00000593946 NESP48681 1621 aa34.89■■■■□ 3.18
PNKP-203ENST00000593946 WRNQ14191 1432 aaPredicted RBP eCLIP34.87■■■■□ 3.17
PNKP-203ENST00000593946 SYNJ1O43426 1573 aa34.78■■■■□ 3.16
PNKP-203ENST00000593946 FANCD2Q9BXW9 1451 aa34.74■■■■□ 3.15
PNKP-203ENST00000593946 TOP2BQ02880 1626 aa34.69■■■■□ 3.14
PNKP-203ENST00000593946 BIVM-ERCC5R4GMW8 1640 aa34.69■■■■□ 3.14
PNKP-203ENST00000593946 CUX1P39880 1505 aa34.62■■■■□ 3.13
PNKP-203ENST00000593946 PDS5BQ9NTI5 1447 aa34.61■■■■□ 3.13
PNKP-203ENST00000593946 KIF21AQ7Z4S6 1674 aa34.56■■■■□ 3.12
PNKP-203ENST00000593946 CEP164Q9UPV0 1460 aa34.55■■■■□ 3.12
PNKP-203ENST00000593946 DNMBPQ6XZF7 1577 aa34.42■■■■□ 3.1
PNKP-203ENST00000593946 TOPBP1Q92547 1522 aa34.35■■■■□ 3.09
PNKP-203ENST00000593946 URB2Q14146 1524 aaKnown RBP34.33■■■■□ 3.09
PNKP-203ENST00000593946 SOGA1O94964 1423 aa34.32■■■■□ 3.08
PNKP-203ENST00000593946 FGD5Q6ZNL6 1462 aa34.27■■■■□ 3.08
PNKP-203ENST00000593946 FAM9AQ8IZU1 332 aaPredicted RBP34.26■■■■□ 3.07
PNKP-203ENST00000593946 EEA1Q15075 1411 aa34.25■■■■□ 3.07
PNKP-203ENST00000593946 RUSC2Q8N2Y8 1516 aa34.21■■■■□ 3.07
PNKP-203ENST00000593946 MRC2Q9UBG0 1479 aa34.21■■■■□ 3.07
PNKP-203ENST00000593946 POLA1P09884 1462 aaPredicted RBP34.16■■■■□ 3.06
PNKP-203ENST00000593946 ERCC6Q03468 1493 aa34.16■■■■□ 3.06
PNKP-203ENST00000593946 WDR62O43379 1518 aa34.07■■■■□ 3.05
PNKP-203ENST00000593946 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
PNKP-203ENST00000593946 LOC105371045A0A1W2PR82 267 aa34.04■■■■□ 3.04
PNKP-203ENST00000593946 CSRNP3Q8WYN3 585 aa34.01■■■■□ 3.03
PNKP-203ENST00000593946 KIF27Q86VH2 1401 aa34.01■■■■□ 3.03
PNKP-203ENST00000593946 RAD54L2Q9Y4B4 1467 aa34■■■■□ 3.03
PNKP-203ENST00000593946 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
PNKP-203ENST00000593946 ABCA10Q8WWZ4 1543 aa33.99■■■■□ 3.03
PNKP-203ENST00000593946 CUX2O14529 1486 aa33.97■■■■□ 3.03
PNKP-203ENST00000593946 TARBP1Q13395 1621 aaKnown RBP33.9■■■■□ 3.02
PNKP-203ENST00000593946 KIF21BO75037 1637 aa33.87■■■■□ 3.01
PNKP-203ENST00000593946 ABCA5Q8WWZ7 1642 aa33.78■■■■□ 3
PNKP-203ENST00000593946 GOLGA3Q08378 1498 aa33.75■■■□□ 2.99
PNKP-203ENST00000593946 EHMT2Q96KQ7 1210 aa33.74■■■□□ 2.99
PNKP-203ENST00000593946 IFT140Q96RY7 1462 aa33.74■■■□□ 2.99
PNKP-203ENST00000593946 PRXQ9BXM0 1461 aa33.74■■■□□ 2.99
PNKP-203ENST00000593946 IGF1RP08069 1367 aa33.72■■■□□ 2.99
PNKP-203ENST00000593946 ERICH3Q5RHP9 1530 aa33.69■■■□□ 2.98
PNKP-203ENST00000593946 TDRD9Q8NDG6 1382 aaKnown RBP33.67■■■□□ 2.98
PNKP-203ENST00000593946 GAPVD1Q14C86 1478 aa33.65■■■□□ 2.98
PNKP-203ENST00000593946 RAPGEF2Q9Y4G8 1499 aa33.65■■■□□ 2.98
PNKP-203ENST00000593946 CUL7Q14999 1698 aa33.59■■■□□ 2.97
PNKP-203ENST00000593946 TNIKQ9UKE5 1360 aa33.58■■■□□ 2.97
PNKP-203ENST00000593946 PBRM1Q86U86 1689 aa33.57■■■□□ 2.96
PNKP-203ENST00000593946 ZNF608Q9ULD9 1512 aaPredicted RBP33.55■■■□□ 2.96
PNKP-203ENST00000593946 CARMIL1Q5VZK9 1371 aa33.54■■■□□ 2.96
PNKP-203ENST00000593946 AQRO60306 1485 aaKnown RBP eCLIP33.52■■■□□ 2.962e-6■■■■□ 20.5
PNKP-203ENST00000593946 UBTFP17480 764 aaKnown RBP33.5■■■□□ 2.95
PNKP-203ENST00000593946 EIF4G3O43432 1585 aaKnown RBP33.5■■■□□ 2.95
PNKP-203ENST00000593946 GRIN2BQ13224 1484 aa33.43■■■□□ 2.94
PNKP-203ENST00000593946 CEP162Q5TB80 1403 aa33.37■■■□□ 2.93
PNKP-203ENST00000593946 ADAMTS12P58397 1594 aa33.34■■■□□ 2.93
PNKP-203ENST00000593946 FHAD1B1AJZ9 1412 aa33.28■■■□□ 2.92
PNKP-203ENST00000593946 SNAPC4Q5SXM2 1469 aa33.24■■■□□ 2.91
PNKP-203ENST00000593946 MAGI1Q96QZ7 1491 aaPredicted RBP33.21■■■□□ 2.91
PNKP-203ENST00000593946 CTTNBP2Q8WZ74 1663 aa33.21■■■□□ 2.91
PNKP-203ENST00000593946 CLIP1P30622 1438 aa33.17■■■□□ 2.9
PNKP-203ENST00000593946 SYNJ2O15056 1496 aa33.06■■■□□ 2.88
PNKP-203ENST00000593946 GRIN2AQ12879 1464 aa33.04■■■□□ 2.88
PNKP-203ENST00000593946 RANGAP1P46060 587 aaPredicted RBP32.98■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms