RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 WDR62O43379 1518 aa29.8■■■□□ 2.36
CLIP3-206ENST00000593074 ERCC6Q03468 1493 aa29.78■■■□□ 2.36
CLIP3-206ENST00000593074 TIAM1Q13009 1591 aa29.75■■■□□ 2.35
CLIP3-206ENST00000593074 FHAD1B1AJZ9 1412 aa29.75■■■□□ 2.35
CLIP3-206ENST00000593074 HNRNPUL2Q1KMD3 747 aaKnown RBP29.74■■■□□ 2.35
CLIP3-206ENST00000593074 IFT140Q96RY7 1462 aa29.73■■■□□ 2.35
CLIP3-206ENST00000593074 RRBP1Q9P2E9 1410 aaKnown RBP29.73■■■□□ 2.35
CLIP3-206ENST00000593074 AQRO60306 1485 aaKnown RBP eCLIP29.72■■■□□ 2.35
CLIP3-206ENST00000593074 PCF11O94913 1555 aaKnown RBP29.69■■■□□ 2.34
CLIP3-206ENST00000593074 P3H3Q8IVL6 736 aa29.67■■■□□ 2.34
CLIP3-206ENST00000593074 CFAP43Q8NDM7 1665 aa29.66■■■□□ 2.34
CLIP3-206ENST00000593074 PBRM1Q86U86 1689 aa29.64■■■□□ 2.34
CLIP3-206ENST00000593074 GRIN2BQ13224 1484 aa29.64■■■□□ 2.34
CLIP3-206ENST00000593074 FHOD3Q2V2M9 1422 aa29.62■■■□□ 2.33
CLIP3-206ENST00000593074 FYCO1Q9BQS8 1478 aa29.61■■■□□ 2.33
CLIP3-206ENST00000593074 ZNF608Q9ULD9 1512 aaPredicted RBP29.6■■■□□ 2.33
CLIP3-206ENST00000593074 LRRC9Q6ZRR7 1453 aa29.6■■■□□ 2.33
CLIP3-206ENST00000593074 SAMD9Q5K651 1589 aa29.59■■■□□ 2.33
CLIP3-206ENST00000593074 THOC2Q8NI27 1593 aaKnown RBP29.57■■■□□ 2.32
CLIP3-206ENST00000593074 CASKIN1Q8WXD9 1431 aa29.55■■■□□ 2.32
CLIP3-206ENST00000593074 CCNB3Q8WWL7 1395 aa29.55■■■□□ 2.32
CLIP3-206ENST00000593074 ADAMTS12P58397 1594 aa29.54■■■□□ 2.32
CLIP3-206ENST00000593074 FMN1Q68DA7 1419 aa29.51■■■□□ 2.31
CLIP3-206ENST00000593074 SNAPC4Q5SXM2 1469 aa29.47■■■□□ 2.31
CLIP3-206ENST00000593074 ATP1B4Q9UN42 357 aaPredicted RBP29.46■■■□□ 2.31
CLIP3-206ENST00000593074 EIF4G3O43432 1585 aaKnown RBP29.42■■■□□ 2.3
CLIP3-206ENST00000593074 PHLDB1Q86UU1 1377 aa29.38■■■□□ 2.29
CLIP3-206ENST00000593074 IQGAP2Q13576 1575 aa29.36■■■□□ 2.29
CLIP3-206ENST00000593074 CLSPNQ9HAW4 1339 aa29.33■■■□□ 2.29
CLIP3-206ENST00000593074 DHX57Q6P158 1386 aaKnown RBP29.32■■■□□ 2.28
CLIP3-206ENST00000593074 LRRIQ1Q96JM4 1722 aa29.3■■■□□ 2.28
CLIP3-206ENST00000593074 MAGI1Q96QZ7 1491 aaPredicted RBP29.3■■■□□ 2.28
CLIP3-206ENST00000593074 GRIN2AQ12879 1464 aa29.28■■■□□ 2.28
CLIP3-206ENST00000593074 KIAA0586Q9BVV6 1533 aa29.26■■■□□ 2.27
CLIP3-206ENST00000593074 CHMP7Q8WUX9 453 aaPredicted RBP29.24■■■□□ 2.27
CLIP3-206ENST00000593074 UGGT2Q9NYU1 1516 aa29.23■■■□□ 2.27
CLIP3-206ENST00000593074 SYNJ2O15056 1496 aa29.21■■■□□ 2.27
CLIP3-206ENST00000593074 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLIP3-206ENST00000593074 MTUS2Q5JR59 1369 aa29.15■■■□□ 2.26
CLIP3-206ENST00000593074 CCDC18Q5T9S5 1454 aa29.15■■■□□ 2.26
CLIP3-206ENST00000593074 ITGAEP38570 1179 aa29.14■■■□□ 2.26
CLIP3-206ENST00000593074 FBLN2P98095 1184 aa29.14■■■□□ 2.26
CLIP3-206ENST00000593074 HECW1Q76N89 1606 aa29.14■■■□□ 2.26
CLIP3-206ENST00000593074 EHBP1L1Q8N3D4 1523 aa29.14■■■□□ 2.26
CLIP3-206ENST00000593074 RAB3GAP2Q9H2M9 1393 aa29.12■■■□□ 2.25
CLIP3-206ENST00000593074 FGD6Q6ZV73 1430 aa29.11■■■□□ 2.25
CLIP3-206ENST00000593074 SETD5Q9C0A6 1442 aa29.09■■■□□ 2.25
CLIP3-206ENST00000593074 SUPT6HQ7KZ85 1726 aaKnown RBP29.09■■■□□ 2.25
CLIP3-206ENST00000593074 FAM50AQ14320 339 aaKnown RBP29.09■■■□□ 2.25
CLIP3-206ENST00000593074 ZNF316A6NFI3 1004 aaPredicted RBP29.08■■■□□ 2.25
CLIP3-206ENST00000593074 DISP1Q96F81 1524 aa29.07■■■□□ 2.24
CLIP3-206ENST00000593074 NCOA2Q15596 1464 aa29.06■■■□□ 2.24
CLIP3-206ENST00000593074 KIAA0556O60303 1618 aa29.05■■■□□ 2.24
CLIP3-206ENST00000593074 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
CLIP3-206ENST00000593074 ARHGEF11O15085 1522 aa29.05■■■□□ 2.24
CLIP3-206ENST00000593074 DIEXFQ68CQ4 756 aaKnown RBP29.05■■■□□ 2.24
CLIP3-206ENST00000593074 MAGI3Q5TCQ9 1506 aa29.04■■■□□ 2.24
CLIP3-206ENST00000593074 NUP160Q12769 1436 aa29.02■■■□□ 2.24
CLIP3-206ENST00000593074 EPRSP07814 1512 aaKnown RBP29.02■■■□□ 2.24
CLIP3-206ENST00000593074 MYOM3Q5VTT5 1437 aa29.01■■■□□ 2.23
CLIP3-206ENST00000593074 MAPKBP1O60336 1514 aa28.98■■■□□ 2.23
CLIP3-206ENST00000593074 JPH4Q96JJ6 628 aa28.95■■■□□ 2.23
CLIP3-206ENST00000593074 CDK13Q14004 1512 aaKnown RBP28.91■■■□□ 2.22
CLIP3-206ENST00000593074 CARMIL2Q6F5E8 1435 aa28.91■■■□□ 2.22
CLIP3-206ENST00000593074 PTPN23Q9H3S7 1636 aa28.89■■■□□ 2.22
CLIP3-206ENST00000593074 RAPGEF6Q8TEU7 1601 aa28.86■■■□□ 2.21
CLIP3-206ENST00000593074 ARID3CA6NKF2 412 aa28.85■■■□□ 2.21
CLIP3-206ENST00000593074 TCOF1Q13428 1488 aaKnown RBP28.85■■■□□ 2.21
CLIP3-206ENST00000593074 PTPRKQ15262 1439 aa28.84■■■□□ 2.21
CLIP3-206ENST00000593074 HFM1A2PYH4 1435 aa28.83■■■□□ 2.21
CLIP3-206ENST00000593074 NUP153P49790 1475 aaKnown RBP28.83■■■□□ 2.2
CLIP3-206ENST00000593074 MIA2Q96PC5 1412 aa28.77■■■□□ 2.2
CLIP3-206ENST00000593074 CDK11AQ9UQ88 783 aaPredicted RBP28.77■■■□□ 2.2
CLIP3-206ENST00000593074 PLB1Q6P1J6 1458 aa28.72■■■□□ 2.19
CLIP3-206ENST00000593074 NAIPQ13075 1403 aa28.71■■■□□ 2.19
CLIP3-206ENST00000593074 CHD1O14646 1710 aa28.67■■■□□ 2.18
CLIP3-206ENST00000593074 PRG4Q92954 1404 aaPredicted RBP28.67■■■□□ 2.18
CLIP3-206ENST00000593074 AKNAQ7Z591 1439 aa28.66■■■□□ 2.18
CLIP3-206ENST00000593074 UACAQ9BZF9 1416 aa28.66■■■□□ 2.18
CLIP3-206ENST00000593074 GCC2Q8IWJ2 1684 aa28.66■■■□□ 2.18
CLIP3-206ENST00000593074 TROQ12816 1431 aaPredicted RBP28.6■■■□□ 2.17
CLIP3-206ENST00000593074 ABCA8O94911 1581 aa28.59■■■□□ 2.17
CLIP3-206ENST00000593074 TIMELESSQ9UNS1 1208 aa28.58■■■□□ 2.17
CLIP3-206ENST00000593074 ADCY10Q96PN6 1610 aa28.57■■■□□ 2.16
CLIP3-206ENST00000593074 PTPRGP23470 1445 aa28.57■■■□□ 2.16
CLIP3-206ENST00000593074 SIN3AQ96ST3 1273 aa28.55■■■□□ 2.16
CLIP3-206ENST00000593074 DNMT1P26358 1616 aaKnown RBP28.53■■■□□ 2.16
CLIP3-206ENST00000593074 ITSN2Q9NZM3 1697 aa28.51■■■□□ 2.15
CLIP3-206ENST00000593074 PLEKHD1A6NEE1 506 aa28.5■■■□□ 2.15
CLIP3-206ENST00000593074 SHROOM2Q13796 1616 aa28.5■■■□□ 2.15
CLIP3-206ENST00000593074 ATP10BO94823 1461 aa28.5■■■□□ 2.15
CLIP3-206ENST00000593074 DAPK1P53355 1430 aa28.49■■■□□ 2.15
CLIP3-206ENST00000593074 MIER1Q8N108 512 aa28.47■■■□□ 2.15
CLIP3-206ENST00000593074 CHIC2Q9UKJ5 165 aa28.47■■■□□ 2.15
CLIP3-206ENST00000593074 NEUROD1Q13562 356 aa28.47■■■□□ 2.15
CLIP3-206ENST00000593074 KIF14Q15058 1648 aa28.46■■■□□ 2.15
CLIP3-206ENST00000593074 ROCK1Q13464 1354 aa28.46■■■□□ 2.15
CLIP3-206ENST00000593074 RRP7BPQ9NSQ0 103 aa28.45■■■□□ 2.14
CLIP3-206ENST00000593074 KDM6BO15054 1643 aa28.44■■■□□ 2.14
CLIP3-206ENST00000593074 ABCC5O15440 1437 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms