RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 NISCHQ9Y2I1 1504 aa42.89■■■■■ 4.46
CLIP3-206ENST00000593074 CCDC180Q9P1Z9 1646 aa37.04■■■■□ 3.52
CLIP3-206ENST00000593074 ZCCHC6Q5VYS8 1495 aaKnown RBP36.21■■■■□ 3.39
CLIP3-206ENST00000593074 SHROOM4Q9ULL8 1493 aa35.57■■■■□ 3.28
CLIP3-206ENST00000593074 DCAF8L2P0C7V8 631 aa35.52■■■■□ 3.28
CLIP3-206ENST00000593074 DCAF1Q9Y4B6 1507 aa35.44■■■■□ 3.26
CLIP3-206ENST00000593074 ABCC9O60706 1549 aa34.79■■■■□ 3.16
CLIP3-206ENST00000593074 MYO15BQ96JP2 1530 aa34.78■■■■□ 3.16
CLIP3-206ENST00000593074 SUPT5HO00267 1087 aaKnown RBP34.56■■■■□ 3.12
CLIP3-206ENST00000593074 NACADO15069 1562 aa34.47■■■■□ 3.11
CLIP3-206ENST00000593074 SCRIBQ14160 1630 aa34.26■■■■□ 3.08
CLIP3-206ENST00000593074 RB1CC1Q8TDY2 1594 aa34.06■■■■□ 3.04
CLIP3-206ENST00000593074 RSF1Q96T23 1441 aaPredicted RBP33.58■■■□□ 2.97
CLIP3-206ENST00000593074 CHIC1Q5VXU3 224 aa33.49■■■□□ 2.95
CLIP3-206ENST00000593074 CECR2Q9BXF3 1484 aa33.35■■■□□ 2.93
CLIP3-206ENST00000593074 UNC13AQ9UPW8 1703 aa33.32■■■□□ 2.92
CLIP3-206ENST00000593074 MROH2BQ7Z745 1585 aa33.2■■■□□ 2.9
CLIP3-206ENST00000593074 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
CLIP3-206ENST00000593074 BICRAQ9NZM4 1560 aa33.03■■■□□ 2.88
CLIP3-206ENST00000593074 PABPN1Q86U42 306 aaKnown RBP eCLIP33.01■■■□□ 2.87
CLIP3-206ENST00000593074 WIZO95785 1651 aa32.97■■■□□ 2.87
CLIP3-206ENST00000593074 SMARCA4P51532 1647 aa32.83■■■□□ 2.85
CLIP3-206ENST00000593074 TOP2AP11388 1531 aaKnown RBP32.62■■■□□ 2.81
CLIP3-206ENST00000593074 EIF4G1Q04637 1599 aaKnown RBP32.46■■■□□ 2.79
CLIP3-206ENST00000593074 TRIM41Q8WV44 630 aa32.4■■■□□ 2.78
CLIP3-206ENST00000593074 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
CLIP3-206ENST00000593074 SMARCA2P51531 1590 aa32.36■■■□□ 2.77
CLIP3-206ENST00000593074 CCDC88BA6NC98 1476 aa32.31■■■□□ 2.76
CLIP3-206ENST00000593074 LOC105371045A0A1W2PR82 267 aa32.26■■■□□ 2.75
CLIP3-206ENST00000593074 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
CLIP3-206ENST00000593074 BAZ1BQ9UIG0 1483 aaKnown RBP32.08■■■□□ 2.73
CLIP3-206ENST00000593074 ABCC8Q09428 1581 aa31.91■■■□□ 2.7
CLIP3-206ENST00000593074 FAM9AQ8IZU1 332 aaPredicted RBP31.87■■■□□ 2.69
CLIP3-206ENST00000593074 NCAPD3P42695 1498 aa31.86■■■□□ 2.69
CLIP3-206ENST00000593074 HMGXB3Q12766 1538 aa31.78■■■□□ 2.68
CLIP3-206ENST00000593074 PCGF6Q9BYE7 350 aa31.58■■■□□ 2.65
CLIP3-206ENST00000593074 WRNQ14191 1432 aaPredicted RBP eCLIP31.57■■■□□ 2.64
CLIP3-206ENST00000593074 EEA1Q15075 1411 aa31.49■■■□□ 2.63
CLIP3-206ENST00000593074 SOGA1O94964 1423 aa31.46■■■□□ 2.63
CLIP3-206ENST00000593074 SYNJ1O43426 1573 aa31.46■■■□□ 2.63
CLIP3-206ENST00000593074 CC2D2AQ9P2K1 1620 aa31.42■■■□□ 2.62
CLIP3-206ENST00000593074 EHMT2Q96KQ7 1210 aa31.41■■■□□ 2.62
CLIP3-206ENST00000593074 TRIM26Q12899 539 aaPredicted RBP31.36■■■□□ 2.61
CLIP3-206ENST00000593074 HRCP23327 699 aa31.31■■■□□ 2.6
CLIP3-206ENST00000593074 RUSC2Q8N2Y8 1516 aa31.31■■■□□ 2.6
CLIP3-206ENST00000593074 CFTRP13569 1480 aa31.29■■■□□ 2.6
CLIP3-206ENST00000593074 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
CLIP3-206ENST00000593074 CSRNP3Q8WYN3 585 aa31.23■■■□□ 2.59
CLIP3-206ENST00000593074 BIVM-ERCC5R4GMW8 1640 aa31.2■■■□□ 2.58
CLIP3-206ENST00000593074 TNIKQ9UKE5 1360 aa31.16■■■□□ 2.58
CLIP3-206ENST00000593074 CADPSQ9ULU8 1353 aa31.12■■■□□ 2.57
CLIP3-206ENST00000593074 GOLGA3Q08378 1498 aa31.12■■■□□ 2.57
CLIP3-206ENST00000593074 KIF21BO75037 1637 aa31.09■■■□□ 2.57
CLIP3-206ENST00000593074 CEP162Q5TB80 1403 aa31.09■■■□□ 2.57
CLIP3-206ENST00000593074 PRDM2Q13029 1718 aa31.07■■■□□ 2.56
CLIP3-206ENST00000593074 CEP164Q9UPV0 1460 aa31.05■■■□□ 2.56
CLIP3-206ENST00000593074 CUX1P39880 1505 aa30.99■■■□□ 2.55
CLIP3-206ENST00000593074 UBTFP17480 764 aaKnown RBP30.89■■■□□ 2.54
CLIP3-206ENST00000593074 RAPGEF2Q9Y4G8 1499 aa30.79■■■□□ 2.52
CLIP3-206ENST00000593074 FANCD2Q9BXW9 1451 aa30.76■■■□□ 2.52
CLIP3-206ENST00000593074 ERICH3Q5RHP9 1530 aa30.73■■■□□ 2.51
CLIP3-206ENST00000593074 PRXQ9BXM0 1461 aa30.71■■■□□ 2.51
CLIP3-206ENST00000593074 KIF27Q86VH2 1401 aa30.69■■■□□ 2.5
CLIP3-206ENST00000593074 NESP48681 1621 aa30.69■■■□□ 2.5
CLIP3-206ENST00000593074 PPARGC1BQ86YN6 1023 aaKnown RBP30.67■■■□□ 2.5
CLIP3-206ENST00000593074 CLIP1P30622 1438 aa30.65■■■□□ 2.5
CLIP3-206ENST00000593074 LAMC3Q9Y6N6 1575 aa30.64■■■□□ 2.5
CLIP3-206ENST00000593074 DNAJC5BQ9UF47 199 aa30.63■■■□□ 2.49
CLIP3-206ENST00000593074 FGD5Q6ZNL6 1462 aa30.58■■■□□ 2.49
CLIP3-206ENST00000593074 DNMBPQ6XZF7 1577 aa30.51■■■□□ 2.47
CLIP3-206ENST00000593074 CUX2O14529 1486 aa30.51■■■□□ 2.47
CLIP3-206ENST00000593074 VPS8Q8N3P4 1428 aa30.5■■■□□ 2.47
CLIP3-206ENST00000593074 PDS5BQ9NTI5 1447 aa30.47■■■□□ 2.47
CLIP3-206ENST00000593074 ZEB1P37275 1124 aaPredicted RBP30.46■■■□□ 2.47
CLIP3-206ENST00000593074 TOPBP1Q92547 1522 aa30.46■■■□□ 2.47
CLIP3-206ENST00000593074 IGF1RP08069 1367 aa30.41■■■□□ 2.46
CLIP3-206ENST00000593074 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
CLIP3-206ENST00000593074 URB2Q14146 1524 aaKnown RBP30.33■■■□□ 2.45
CLIP3-206ENST00000593074 RAD54L2Q9Y4B4 1467 aa30.31■■■□□ 2.44
CLIP3-206ENST00000593074 RANGAP1P46060 587 aaPredicted RBP30.3■■■□□ 2.44
CLIP3-206ENST00000593074 ABCA10Q8WWZ4 1543 aa30.29■■■□□ 2.44
CLIP3-206ENST00000593074 ARAP1Q96P48 1450 aa30.29■■■□□ 2.44
CLIP3-206ENST00000593074 TTBK1Q5TCY1 1321 aaPredicted RBP30.29■■■□□ 2.44
CLIP3-206ENST00000593074 CARMIL1Q5VZK9 1371 aa30.27■■■□□ 2.44
CLIP3-206ENST00000593074 KIF21AQ7Z4S6 1674 aa30.21■■■□□ 2.43
CLIP3-206ENST00000593074 ARHGAP35Q9NRY4 1499 aa30.14■■■□□ 2.41
CLIP3-206ENST00000593074 APLP2Q06481 763 aa30.12■■■□□ 2.41
CLIP3-206ENST00000593074 WDR97A6NE52 1622 aa30.12■■■□□ 2.41
CLIP3-206ENST00000593074 CUL7Q14999 1698 aa30.05■■■□□ 2.4
CLIP3-206ENST00000593074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.05■■■□□ 2.4
CLIP3-206ENST00000593074 TDRD9Q8NDG6 1382 aaKnown RBP30.02■■■□□ 2.4
CLIP3-206ENST00000593074 MRC2Q9UBG0 1479 aa30.01■■■□□ 2.4
CLIP3-206ENST00000593074 CCER1Q8TC90 406 aaPredicted RBP29.99■■■□□ 2.39
CLIP3-206ENST00000593074 ABCA5Q8WWZ7 1642 aa29.97■■■□□ 2.39
CLIP3-206ENST00000593074 GAPVD1Q14C86 1478 aa29.96■■■□□ 2.39
CLIP3-206ENST00000593074 TARBP1Q13395 1621 aaKnown RBP29.92■■■□□ 2.38
CLIP3-206ENST00000593074 CTTNBP2Q8WZ74 1663 aa29.85■■■□□ 2.37
CLIP3-206ENST00000593074 MAP3K1Q13233 1512 aa29.82■■■□□ 2.36
CLIP3-206ENST00000593074 KANK4Q5T7N3 995 aaPredicted RBP29.81■■■□□ 2.36
CLIP3-206ENST00000593074 EFCAB5A4FU69 1503 aa29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms