RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 RAPGEF2Q9Y4G8 1499 aa13.92□□□□□ -0.18
SMAD4-206ENST00000588860 WDR97A6NE52 1622 aa13.91□□□□□ -0.18
SMAD4-206ENST00000588860 POLA1P09884 1462 aaPredicted RBP13.89□□□□□ -0.19
SMAD4-206ENST00000588860 WDR62O43379 1518 aa13.89□□□□□ -0.19
SMAD4-206ENST00000588860 PRXQ9BXM0 1461 aa13.88□□□□□ -0.19
SMAD4-206ENST00000588860 CYB5RLQ6IPT4 315 aa13.86□□□□□ -0.19
SMAD4-206ENST00000588860 RAD54L2Q9Y4B4 1467 aa13.86□□□□□ -0.19
SMAD4-206ENST00000588860 ABCA10Q8WWZ4 1543 aa13.85□□□□□ -0.19
SMAD4-206ENST00000588860 ARHGEF11O15085 1522 aa13.83□□□□□ -0.2
SMAD4-206ENST00000588860 PCGF6Q9BYE7 350 aa13.81□□□□□ -0.2
SMAD4-206ENST00000588860 CUL7Q14999 1698 aa13.8□□□□□ -0.2
SMAD4-206ENST00000588860 CLIP1P30622 1438 aa13.8□□□□□ -0.2
SMAD4-206ENST00000588860 ABCA5Q8WWZ7 1642 aa13.79□□□□□ -0.2
SMAD4-206ENST00000588860 IGF1RP08069 1367 aa13.78□□□□□ -0.2
SMAD4-206ENST00000588860 TARBP1Q13395 1621 aaKnown RBP13.78□□□□□ -0.2
SMAD4-206ENST00000588860 PBRM1Q86U86 1689 aa13.76□□□□□ -0.21
SMAD4-206ENST00000588860 TRIM26Q12899 539 aaPredicted RBP13.76□□□□□ -0.21
SMAD4-206ENST00000588860 CTTNBP2Q8WZ74 1663 aa13.74□□□□□ -0.21
SMAD4-206ENST00000588860 CARMIL1Q5VZK9 1371 aa13.73□□□□□ -0.21
SMAD4-206ENST00000588860 NPM3O75607 178 aaKnown RBP13.73□□□□□ -0.21
SMAD4-206ENST00000588860 RANGAP1P46060 587 aaPredicted RBP13.71□□□□□ -0.21
SMAD4-206ENST00000588860 GAPVD1Q14C86 1478 aa13.69□□□□□ -0.22
SMAD4-206ENST00000588860 PPARGC1BQ86YN6 1023 aaKnown RBP13.69□□□□□ -0.22
SMAD4-206ENST00000588860 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
SMAD4-206ENST00000588860 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
SMAD4-206ENST00000588860 ARAP1Q96P48 1450 aa13.67□□□□□ -0.22
SMAD4-206ENST00000588860 ILDR1Q86SU0 546 aaPredicted RBP13.65□□□□□ -0.22
SMAD4-206ENST00000588860 IFT140Q96RY7 1462 aa13.64□□□□□ -0.23
SMAD4-206ENST00000588860 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
SMAD4-206ENST00000588860 KCNA4P22459 653 aa13.61□□□□□ -0.23
SMAD4-206ENST00000588860 ADAMTS12P58397 1594 aa13.61□□□□□ -0.23
SMAD4-206ENST00000588860 EIF4G3O43432 1585 aaKnown RBP13.6□□□□□ -0.23
SMAD4-206ENST00000588860 TTBK1Q5TCY1 1321 aaPredicted RBP13.59□□□□□ -0.23
SMAD4-206ENST00000588860 AQRO60306 1485 aaKnown RBP eCLIP13.58□□□□□ -0.24
SMAD4-206ENST00000588860 ZNF608Q9ULD9 1512 aaPredicted RBP13.58□□□□□ -0.24
SMAD4-206ENST00000588860 GRIN2BQ13224 1484 aa13.57□□□□□ -0.24
SMAD4-206ENST00000588860 EFCAB5A4FU69 1503 aa13.56□□□□□ -0.24
SMAD4-206ENST00000588860 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
SMAD4-206ENST00000588860 APLP2Q06481 763 aa13.54□□□□□ -0.24
SMAD4-206ENST00000588860 FHAD1B1AJZ9 1412 aa13.54□□□□□ -0.24
SMAD4-206ENST00000588860 HRCP23327 699 aa13.52□□□□□ -0.25
SMAD4-206ENST00000588860 POTEHQ6S545 545 aa13.52□□□□□ -0.25
SMAD4-206ENST00000588860 SAMD9Q5K651 1589 aa13.51□□□□□ -0.25
SMAD4-206ENST00000588860 DSG3P32926 999 aa13.51□□□□□ -0.25
SMAD4-206ENST00000588860 PCF11O94913 1555 aaKnown RBP13.5□□□□□ -0.25
SMAD4-206ENST00000588860 CFAP43Q8NDM7 1665 aa13.5□□□□□ -0.25
SMAD4-206ENST00000588860 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
SMAD4-206ENST00000588860 CAPN15O75808 1086 aa13.48□□□□□ -0.25
SMAD4-206ENST00000588860 IQGAP2Q13576 1575 aa13.47□□□□□ -0.25
SMAD4-206ENST00000588860 FHOD3Q2V2M9 1422 aa13.47□□□□□ -0.25
SMAD4-206ENST00000588860 SPINK5Q9NQ38 1064 aaPredicted RBP13.46□□□□□ -0.25
SMAD4-206ENST00000588860 TIAM1Q13009 1591 aa13.45□□□□□ -0.26
SMAD4-206ENST00000588860 FBLN2P98095 1184 aa13.45□□□□□ -0.26
SMAD4-206ENST00000588860 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
SMAD4-206ENST00000588860 P3H3Q8IVL6 736 aa13.44□□□□□ -0.26
SMAD4-206ENST00000588860 CHD1O14646 1710 aa13.43□□□□□ -0.26
SMAD4-206ENST00000588860 MAP3K1Q13233 1512 aa13.43□□□□□ -0.26
SMAD4-206ENST00000588860 GRIN2AQ12879 1464 aa13.42□□□□□ -0.26
SMAD4-206ENST00000588860 FYCO1Q9BQS8 1478 aa13.42□□□□□ -0.26
SMAD4-206ENST00000588860 LRRIQ1Q96JM4 1722 aa13.42□□□□□ -0.26
SMAD4-206ENST00000588860 SYNJ2O15056 1496 aa13.39□□□□□ -0.27
SMAD4-206ENST00000588860 FMN1Q68DA7 1419 aa13.39□□□□□ -0.27
SMAD4-206ENST00000588860 CASKIN1Q8WXD9 1431 aa13.39□□□□□ -0.27
SMAD4-206ENST00000588860 KANK4Q5T7N3 995 aaPredicted RBP13.37□□□□□ -0.27
SMAD4-206ENST00000588860 UGGT2Q9NYU1 1516 aa13.37□□□□□ -0.27
SMAD4-206ENST00000588860 CEP170Q5SW79 1584 aa13.37□□□□□ -0.27
SMAD4-206ENST00000588860 KIAA0586Q9BVV6 1533 aa13.35□□□□□ -0.27
SMAD4-206ENST00000588860 LRRC9Q6ZRR7 1453 aa13.35□□□□□ -0.27
SMAD4-206ENST00000588860 KIAA0556O60303 1618 aa13.35□□□□□ -0.27
SMAD4-206ENST00000588860 HECW1Q76N89 1606 aa13.33□□□□□ -0.28
SMAD4-206ENST00000588860 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
SMAD4-206ENST00000588860 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
SMAD4-206ENST00000588860 NUP160Q12769 1436 aa13.29□□□□□ -0.28
SMAD4-206ENST00000588860 RRBP1Q9P2E9 1410 aaKnown RBP13.29□□□□□ -0.28
SMAD4-206ENST00000588860 DISP1Q96F81 1524 aa13.29□□□□□ -0.28
SMAD4-206ENST00000588860 ZEB1P37275 1124 aaPredicted RBP13.28□□□□□ -0.28
SMAD4-206ENST00000588860 HNRNPUL2Q1KMD3 747 aaKnown RBP13.28□□□□□ -0.28
SMAD4-206ENST00000588860 CCDC18Q5T9S5 1454 aa13.26□□□□□ -0.29
SMAD4-206ENST00000588860 SUPT6HQ7KZ85 1726 aaKnown RBP13.26□□□□□ -0.29
SMAD4-206ENST00000588860 CLASP1Q7Z460 1538 aa13.26□□□□□ -0.29
SMAD4-206ENST00000588860 RAPGEF6Q8TEU7 1601 aa13.25□□□□□ -0.29
SMAD4-206ENST00000588860 KDM4FA0A1W2PPD8 638 aa13.25□□□□□ -0.29
SMAD4-206ENST00000588860 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.25□□□□□ -0.29
SMAD4-206ENST00000588860 EHBP1L1Q8N3D4 1523 aa13.23□□□□□ -0.29
SMAD4-206ENST00000588860 CCNB3Q8WWL7 1395 aa13.23□□□□□ -0.29
SMAD4-206ENST00000588860 CCER1Q8TC90 406 aaPredicted RBP13.23□□□□□ -0.29
SMAD4-206ENST00000588860 PHLDB1Q86UU1 1377 aa13.21□□□□□ -0.29
SMAD4-206ENST00000588860 SLC4A2P04920 1241 aa13.21□□□□□ -0.29
SMAD4-206ENST00000588860 MTUS2Q5JR59 1369 aa13.2□□□□□ -0.3
SMAD4-206ENST00000588860 EPRSP07814 1512 aaKnown RBP13.2□□□□□ -0.3
SMAD4-206ENST00000588860 CDK13Q14004 1512 aaKnown RBP13.19□□□□□ -0.3
SMAD4-206ENST00000588860 CARMIL2Q6F5E8 1435 aa13.19□□□□□ -0.3
SMAD4-206ENST00000588860 MAGI3Q5TCQ9 1506 aa13.18□□□□□ -0.3
SMAD4-206ENST00000588860 ZNF219Q9P2Y4 722 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-206ENST00000588860 SHROOM2Q13796 1616 aa13.17□□□□□ -0.3
SMAD4-206ENST00000588860 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
SMAD4-206ENST00000588860 JPH4Q96JJ6 628 aa13.15□□□□□ -0.3
SMAD4-206ENST00000588860 NUP153P49790 1475 aaKnown RBP13.15□□□□□ -0.3
SMAD4-206ENST00000588860 ITGAEP38570 1179 aa13.12□□□□□ -0.31
SMAD4-206ENST00000588860 FAM50AQ14320 339 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms