RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
SMAD4-206ENST00000588860 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
SMAD4-206ENST00000588860 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
SMAD4-206ENST00000588860 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
SMAD4-206ENST00000588860 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
SMAD4-206ENST00000588860 FOXD1Q16676 465 aa18.12■□□□□ 0.49
SMAD4-206ENST00000588860 POTEDQ86YR6 584 aa17.33■□□□□ 0.36
SMAD4-206ENST00000588860 MSH5O43196 834 aa17.15■□□□□ 0.34
SMAD4-206ENST00000588860 CCDC180Q9P1Z9 1646 aa17.12■□□□□ 0.33
SMAD4-206ENST00000588860 ABCC9O60706 1549 aa16.89■□□□□ 0.29
SMAD4-206ENST00000588860 PIAS4Q8N2W9 510 aaPredicted RBP16.83■□□□□ 0.28
SMAD4-206ENST00000588860 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
SMAD4-206ENST00000588860 PPP6R1Q9UPN7 881 aa16.64■□□□□ 0.25
SMAD4-206ENST00000588860 DNAJC5BQ9UF47 199 aa16.59■□□□□ 0.25
SMAD4-206ENST00000588860 ADRA2BP18089 450 aa16.55■□□□□ 0.24
SMAD4-206ENST00000588860 ZCCHC6Q5VYS8 1495 aaKnown RBP16.48■□□□□ 0.23
SMAD4-206ENST00000588860 DCAF1Q9Y4B6 1507 aa16.19■□□□□ 0.18
SMAD4-206ENST00000588860 DCAF8L2P0C7V8 631 aa16.11■□□□□ 0.17
SMAD4-206ENST00000588860 SHROOM4Q9ULL8 1493 aa16.1■□□□□ 0.17
SMAD4-206ENST00000588860 MYO15BQ96JP2 1530 aa15.92■□□□□ 0.14
SMAD4-206ENST00000588860 NACADO15069 1562 aa15.85■□□□□ 0.13
SMAD4-206ENST00000588860 DNAJC5Q9H3Z4 198 aa15.81■□□□□ 0.12
SMAD4-206ENST00000588860 SCRIBQ14160 1630 aa15.77■□□□□ 0.12
SMAD4-206ENST00000588860 RB1CC1Q8TDY2 1594 aa15.71■□□□□ 0.11
SMAD4-206ENST00000588860 PABPN1Q86U42 306 aaKnown RBP eCLIP15.65■□□□□ 0.1
SMAD4-206ENST00000588860 UNC13AQ9UPW8 1703 aa15.54■□□□□ 0.08
SMAD4-206ENST00000588860 SUPT5HO00267 1087 aaKnown RBP15.51■□□□□ 0.07
SMAD4-206ENST00000588860 DMRT2Q9Y5R5 561 aa15.34■□□□□ 0.05
SMAD4-206ENST00000588860 MAPK8IP2Q13387 824 aaPredicted RBP15.31■□□□□ 0.04
SMAD4-206ENST00000588860 CECR2Q9BXF3 1484 aa15.3■□□□□ 0.04
SMAD4-206ENST00000588860 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
SMAD4-206ENST00000588860 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
SMAD4-206ENST00000588860 RSF1Q96T23 1441 aaPredicted RBP15.21■□□□□ 0.03
SMAD4-206ENST00000588860 CC2D2AQ9P2K1 1620 aa15.2■□□□□ 0.02
SMAD4-206ENST00000588860 MROH2BQ7Z745 1585 aa15.15■□□□□ 0.02
SMAD4-206ENST00000588860 BAZ1AQ9NRL2 1556 aaPredicted RBP15.14■□□□□ 0.01
SMAD4-206ENST00000588860 WIZO95785 1651 aa15.11■□□□□ 0.01
SMAD4-206ENST00000588860 SMARCA4P51532 1647 aa15.1■□□□□ 0.01
SMAD4-206ENST00000588860 EIF4G1Q04637 1599 aaKnown RBP14.97□□□□□ -0.01
SMAD4-206ENST00000588860 TOP2AP11388 1531 aaKnown RBP14.92□□□□□ -0.02
SMAD4-206ENST00000588860 CACNB1Q02641 598 aaPredicted RBP14.91□□□□□ -0.02
SMAD4-206ENST00000588860 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
SMAD4-206ENST00000588860 CUX2O14529 1486 aa14.85□□□□□ -0.03
SMAD4-206ENST00000588860 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
SMAD4-206ENST00000588860 SMARCA2P51531 1590 aa14.78□□□□□ -0.04
SMAD4-206ENST00000588860 ATAD2BQ9ULI0 1458 aa14.74□□□□□ -0.05
SMAD4-206ENST00000588860 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
SMAD4-206ENST00000588860 BAZ1BQ9UIG0 1483 aaKnown RBP14.69□□□□□ -0.06
SMAD4-206ENST00000588860 DCAF8L1A6NGE4 600 aa14.67□□□□□ -0.06
SMAD4-206ENST00000588860 HOXD11P31277 338 aaPredicted RBP14.65□□□□□ -0.06
SMAD4-206ENST00000588860 ERCC6Q03468 1493 aa14.63□□□□□ -0.07
SMAD4-206ENST00000588860 PPP4R3CPQ6ZMV5 832 aa14.62□□□□□ -0.07
SMAD4-206ENST00000588860 HMGXB3Q12766 1538 aa14.61□□□□□ -0.07
SMAD4-206ENST00000588860 RNF39Q9H2S5 420 aa14.58□□□□□ -0.08
SMAD4-206ENST00000588860 NCAPD3P42695 1498 aa14.56□□□□□ -0.08
SMAD4-206ENST00000588860 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
SMAD4-206ENST00000588860 CNKSR2Q8WXI2 1034 aa14.46□□□□□ -0.09
SMAD4-206ENST00000588860 PRDM2Q13029 1718 aa14.45□□□□□ -0.1
SMAD4-206ENST00000588860 RNF216Q9NWF9 866 aaPredicted RBP14.44□□□□□ -0.1
SMAD4-206ENST00000588860 C1QBPQ07021 282 aaKnown RBP14.38□□□□□ -0.11
SMAD4-206ENST00000588860 SYNJ1O43426 1573 aa14.34□□□□□ -0.11
SMAD4-206ENST00000588860 WRNQ14191 1432 aaPredicted RBP eCLIP14.33□□□□□ -0.11
SMAD4-206ENST00000588860 LOC105371045A0A1W2PR82 267 aa14.33□□□□□ -0.12
SMAD4-206ENST00000588860 FAM9AQ8IZU1 332 aaPredicted RBP14.32□□□□□ -0.12
SMAD4-206ENST00000588860 CFTRP13569 1480 aa14.29□□□□□ -0.12
SMAD4-206ENST00000588860 NESP48681 1621 aa14.29□□□□□ -0.12
SMAD4-206ENST00000588860 BIVM-ERCC5R4GMW8 1640 aa14.28□□□□□ -0.12
SMAD4-206ENST00000588860 TOP2BQ02880 1626 aa14.26□□□□□ -0.13
SMAD4-206ENST00000588860 THOC2Q8NI27 1593 aaKnown RBP14.24□□□□□ -0.13
SMAD4-206ENST00000588860 SOGA1O94964 1423 aa14.2□□□□□ -0.14
SMAD4-206ENST00000588860 CADPSQ9ULU8 1353 aa14.2□□□□□ -0.14
SMAD4-206ENST00000588860 EEA1Q15075 1411 aa14.19□□□□□ -0.14
SMAD4-206ENST00000588860 CUX1P39880 1505 aa14.18□□□□□ -0.14
SMAD4-206ENST00000588860 RUSC2Q8N2Y8 1516 aa14.15□□□□□ -0.14
SMAD4-206ENST00000588860 EHMT2Q96KQ7 1210 aa14.15□□□□□ -0.14
SMAD4-206ENST00000588860 OSCARQ8IYS5 282 aa14.13□□□□□ -0.15
SMAD4-206ENST00000588860 LAMC3Q9Y6N6 1575 aa14.12□□□□□ -0.15
SMAD4-206ENST00000588860 FANCD2Q9BXW9 1451 aa14.09□□□□□ -0.15
SMAD4-206ENST00000588860 KIF21BO75037 1637 aa14.08□□□□□ -0.16
SMAD4-206ENST00000588860 CSRNP3Q8WYN3 585 aa14.06□□□□□ -0.16
SMAD4-206ENST00000588860 KIF21AQ7Z4S6 1674 aa14.04□□□□□ -0.16
SMAD4-206ENST00000588860 GOLGA3Q08378 1498 aa14.03□□□□□ -0.16
SMAD4-206ENST00000588860 DNMBPQ6XZF7 1577 aa14.03□□□□□ -0.16
SMAD4-206ENST00000588860 PDS5BQ9NTI5 1447 aa14.02□□□□□ -0.16
SMAD4-206ENST00000588860 CEP164Q9UPV0 1460 aa14.01□□□□□ -0.17
SMAD4-206ENST00000588860 FGD5Q6ZNL6 1462 aa13.99□□□□□ -0.17
SMAD4-206ENST00000588860 NCBP3Q53F19 620 aaKnown RBP13.99□□□□□ -0.17
SMAD4-206ENST00000588860 TOPBP1Q92547 1522 aa13.97□□□□□ -0.17
SMAD4-206ENST00000588860 TNIKQ9UKE5 1360 aa13.96□□□□□ -0.17
SMAD4-206ENST00000588860 TRHP20396 242 aaPredicted RBP13.96□□□□□ -0.17
SMAD4-206ENST00000588860 KIF27Q86VH2 1401 aa13.96□□□□□ -0.18
SMAD4-206ENST00000588860 RIMBP3CA6NJZ7 1639 aa13.95□□□□□ -0.18
SMAD4-206ENST00000588860 RIMBP3BA6NNM3 1639 aa13.95□□□□□ -0.18
SMAD4-206ENST00000588860 RIMBP3Q9UFD9 1639 aa13.95□□□□□ -0.18
SMAD4-206ENST00000588860 CEP162Q5TB80 1403 aa13.94□□□□□ -0.18
SMAD4-206ENST00000588860 UBTFP17480 764 aaKnown RBP13.93□□□□□ -0.18
SMAD4-206ENST00000588860 ERICH3Q5RHP9 1530 aa13.93□□□□□ -0.18
SMAD4-206ENST00000588860 URB2Q14146 1524 aaKnown RBP13.92□□□□□ -0.18
SMAD4-206ENST00000588860 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.92□□□□□ -0.183e-6■■□□□ 11.7
SMAD4-206ENST00000588860 MRC2Q9UBG0 1479 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms