RNA–Protein interactions for RNA: ENST00000586417.5

ATG4D-204, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 2

Gene ATG4D, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-204ENST00000586417 CEP170Q5SW79 1584 aa32.56■■■□□ 2.8
ATG4D-204ENST00000586417 NUP160Q12769 1436 aa32.52■■■□□ 2.8
ATG4D-204ENST00000586417 CTTNBP2Q8WZ74 1663 aa32.5■■■□□ 2.79
ATG4D-204ENST00000586417 KIAA0586Q9BVV6 1533 aa32.41■■■□□ 2.78
ATG4D-204ENST00000586417 RANGAP1P46060 587 aaPredicted RBP32.4■■■□□ 2.78
ATG4D-204ENST00000586417 OSCARQ8IYS5 282 aa32.37■■■□□ 2.77
ATG4D-204ENST00000586417 IQGAP2Q13576 1575 aa32.37■■■□□ 2.77
ATG4D-204ENST00000586417 CLASP1Q7Z460 1538 aa32.33■■■□□ 2.77
ATG4D-204ENST00000586417 CLIP1P30622 1438 aa32.32■■■□□ 2.76
ATG4D-204ENST00000586417 JPH4Q96JJ6 628 aa32.24■■■□□ 2.75
ATG4D-204ENST00000586417 UGGT2Q9NYU1 1516 aa32.2■■■□□ 2.74
ATG4D-204ENST00000586417 SHROOM2Q13796 1616 aa32.18■■■□□ 2.74
ATG4D-204ENST00000586417 ARHGAP35Q9NRY4 1499 aa32.14■■■□□ 2.74
ATG4D-204ENST00000586417 P3H3Q8IVL6 736 aa32.14■■■□□ 2.74
ATG4D-204ENST00000586417 DISP1Q96F81 1524 aa32.12■■■□□ 2.73
ATG4D-204ENST00000586417 SAMD9Q5K651 1589 aa32.12■■■□□ 2.73
ATG4D-204ENST00000586417 PRG4Q92954 1404 aaPredicted RBP32.11■■■□□ 2.73
ATG4D-204ENST00000586417 ERCC6L2Q5T890 1561 aa32.08■■■□□ 2.73
ATG4D-204ENST00000586417 EFCAB5A4FU69 1503 aa32.07■■■□□ 2.72
ATG4D-204ENST00000586417 VPS8Q8N3P4 1428 aa32.06■■■□□ 2.72
ATG4D-204ENST00000586417 KIAA0556O60303 1618 aa32.06■■■□□ 2.72
ATG4D-204ENST00000586417 ARAP1Q96P48 1450 aa32.05■■■□□ 2.72
ATG4D-204ENST00000586417 FHOD3Q2V2M9 1422 aa32.03■■■□□ 2.72
ATG4D-204ENST00000586417 PCGF6Q9BYE7 350 aa32.01■■■□□ 2.71
ATG4D-204ENST00000586417 CARMIL2Q6F5E8 1435 aa32■■■□□ 2.71
ATG4D-204ENST00000586417 TRIM26Q12899 539 aaPredicted RBP31.99■■■□□ 2.71
ATG4D-204ENST00000586417 TTBK1Q5TCY1 1321 aaPredicted RBP31.95■■■□□ 2.7
ATG4D-204ENST00000586417 PPARGC1BQ86YN6 1023 aaKnown RBP31.89■■■□□ 2.7
ATG4D-204ENST00000586417 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
ATG4D-204ENST00000586417 PTPRGP23470 1445 aa31.81■■■□□ 2.68
ATG4D-204ENST00000586417 RIMBP3CA6NJZ7 1639 aa31.79■■■□□ 2.68
ATG4D-204ENST00000586417 RIMBP3BA6NNM3 1639 aa31.79■■■□□ 2.68
ATG4D-204ENST00000586417 RIMBP3Q9UFD9 1639 aa31.79■■■□□ 2.68
ATG4D-204ENST00000586417 FMN1Q68DA7 1419 aa31.78■■■□□ 2.68
ATG4D-204ENST00000586417 PLB1Q6P1J6 1458 aa31.72■■■□□ 2.67
ATG4D-204ENST00000586417 PCF11O94913 1555 aaKnown RBP31.71■■■□□ 2.67
ATG4D-204ENST00000586417 ATP1B4Q9UN42 357 aaPredicted RBP31.66■■■□□ 2.66
ATG4D-204ENST00000586417 CASKIN1Q8WXD9 1431 aa31.65■■■□□ 2.66
ATG4D-204ENST00000586417 RAPGEF6Q8TEU7 1601 aa31.65■■■□□ 2.66
ATG4D-204ENST00000586417 ABCA8O94911 1581 aa31.65■■■□□ 2.66
ATG4D-204ENST00000586417 APLP2Q06481 763 aa31.62■■■□□ 2.65
ATG4D-204ENST00000586417 FYCO1Q9BQS8 1478 aa31.61■■■□□ 2.65
ATG4D-204ENST00000586417 UACAQ9BZF9 1416 aa31.61■■■□□ 2.65
ATG4D-204ENST00000586417 DNAJC5Q9H3Z4 198 aa31.61■■■□□ 2.65
ATG4D-204ENST00000586417 LRRIQ1Q96JM4 1722 aa31.58■■■□□ 2.65
ATG4D-204ENST00000586417 ARID3CA6NKF2 412 aa31.58■■■□□ 2.65
ATG4D-204ENST00000586417 CYB5RLQ6IPT4 315 aa31.58■■■□□ 2.65
ATG4D-204ENST00000586417 NUP153P49790 1475 aaKnown RBP31.57■■■□□ 2.64
ATG4D-204ENST00000586417 HECW1Q76N89 1606 aa31.55■■■□□ 2.64
ATG4D-204ENST00000586417 ABCC2Q92887 1545 aa31.54■■■□□ 2.64
ATG4D-204ENST00000586417 ADCY10Q96PN6 1610 aa31.53■■■□□ 2.64
ATG4D-204ENST00000586417 MAP3K1Q13233 1512 aa31.49■■■□□ 2.63
ATG4D-204ENST00000586417 UHRF1BP1LA0JNW5 1464 aa31.49■■■□□ 2.63
ATG4D-204ENST00000586417 EPRSP07814 1512 aaKnown RBP31.48■■■□□ 2.63
ATG4D-204ENST00000586417 CDK13Q14004 1512 aaKnown RBP31.48■■■□□ 2.63
ATG4D-204ENST00000586417 TIAM1Q13009 1591 aa31.46■■■□□ 2.63
ATG4D-204ENST00000586417 KANK4Q5T7N3 995 aaPredicted RBP31.45■■■□□ 2.62
ATG4D-204ENST00000586417 ATP10BO94823 1461 aa31.43■■■□□ 2.62
ATG4D-204ENST00000586417 CFAP43Q8NDM7 1665 aa31.4■■■□□ 2.62
ATG4D-204ENST00000586417 CCDC18Q5T9S5 1454 aa31.39■■■□□ 2.62
ATG4D-204ENST00000586417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.39■■■□□ 2.62
ATG4D-204ENST00000586417 HNRNPUL2Q1KMD3 747 aaKnown RBP31.39■■■□□ 2.62
ATG4D-204ENST00000586417 KDM5BQ9UGL1 1544 aa31.38■■■□□ 2.61
ATG4D-204ENST00000586417 ZCCHC11Q5TAX3 1644 aaKnown RBP31.36■■■□□ 2.61
ATG4D-204ENST00000586417 MAGI3Q5TCQ9 1506 aa31.31■■■□□ 2.6
ATG4D-204ENST00000586417 LRRC9Q6ZRR7 1453 aa31.29■■■□□ 2.6
ATG4D-204ENST00000586417 NPM1P06748 294 aaKnown RBP eCLIP31.25■■■□□ 2.59
ATG4D-204ENST00000586417 MTUS2Q5JR59 1369 aa31.21■■■□□ 2.59
ATG4D-204ENST00000586417 CDK11AQ9UQ88 783 aaPredicted RBP31.21■■■□□ 2.59
ATG4D-204ENST00000586417 PLEKHD1A6NEE1 506 aa31.2■■■□□ 2.59
ATG4D-204ENST00000586417 HRCP23327 699 aa31.18■■■□□ 2.58
ATG4D-204ENST00000586417 ASXL2Q76L83 1435 aa31.16■■■□□ 2.58
ATG4D-204ENST00000586417 TROQ12816 1431 aaPredicted RBP31.15■■■□□ 2.58
ATG4D-204ENST00000586417 EHBP1L1Q8N3D4 1523 aa31.15■■■□□ 2.58
ATG4D-204ENST00000586417 RRBP1Q9P2E9 1410 aaKnown RBP31.13■■■□□ 2.57
ATG4D-204ENST00000586417 WDR7Q9Y4E6 1490 aa31.1■■■□□ 2.57
ATG4D-204ENST00000586417 KIF14Q15058 1648 aa31.1■■■□□ 2.57
ATG4D-204ENST00000586417 KCNH8Q96L42 1107 aa31.1■■■□□ 2.57
ATG4D-204ENST00000586417 MAPKBP1O60336 1514 aa31.08■■■□□ 2.57
ATG4D-204ENST00000586417 SUPT6HQ7KZ85 1726 aaKnown RBP31.05■■■□□ 2.56
ATG4D-204ENST00000586417 NCOA2Q15596 1464 aa31.03■■■□□ 2.56
ATG4D-204ENST00000586417 PHLDB1Q86UU1 1377 aa31.03■■■□□ 2.56
ATG4D-204ENST00000586417 CCNB3Q8WWL7 1395 aa31■■■□□ 2.55
ATG4D-204ENST00000586417 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.96■■■□□ 2.55
ATG4D-204ENST00000586417 ABCC10Q5T3U5 1492 aa30.95■■■□□ 2.55
ATG4D-204ENST00000586417 TTC37Q6PGP7 1564 aa30.95■■■□□ 2.54
ATG4D-204ENST00000586417 ABCA9Q8IUA7 1624 aa30.86■■■□□ 2.53
ATG4D-204ENST00000586417 DIP2BQ9P265 1576 aa30.86■■■□□ 2.53
ATG4D-204ENST00000586417 CDC42BPAQ5VT25 1732 aa30.86■■■□□ 2.53
ATG4D-204ENST00000586417 GPATCH8Q9UKJ3 1502 aaKnown RBP30.85■■■□□ 2.53
ATG4D-204ENST00000586417 MYOM3Q5VTT5 1437 aa30.84■■■□□ 2.53
ATG4D-204ENST00000586417 FAM69CQ0P6D2 419 aa30.82■■■□□ 2.52
ATG4D-204ENST00000586417 KIF13AQ9H1H9 1805 aa30.8■■■□□ 2.52
ATG4D-204ENST00000586417 MYO5CQ9NQX4 1742 aa30.8■■■□□ 2.52
ATG4D-204ENST00000586417 CDC42BPBQ9Y5S2 1711 aa30.79■■■□□ 2.52
ATG4D-204ENST00000586417 FGD6Q6ZV73 1430 aa30.79■■■□□ 2.52
ATG4D-204ENST00000586417 GLI2P10070 1586 aa30.78■■■□□ 2.52
ATG4D-204ENST00000586417 ITSN2Q9NZM3 1697 aa30.77■■■□□ 2.52
ATG4D-204ENST00000586417 PREX2Q70Z35 1606 aa30.77■■■□□ 2.52
ATG4D-204ENST00000586417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.76■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms