RNA–Protein interactions for RNA: ENST00000586417.5

ATG4D-204, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 2

Gene ATG4D, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-204ENST00000586417 NISCHQ9Y2I1 1504 aa47.14■■■■■ 5.14
ATG4D-204ENST00000586417 CCDC180Q9P1Z9 1646 aa41.46■■■■■ 4.23
ATG4D-204ENST00000586417 ABCC9O60706 1549 aa39.92■■■■□ 3.98
ATG4D-204ENST00000586417 ZCCHC6Q5VYS8 1495 aaKnown RBP39.43■■■■□ 3.9
ATG4D-204ENST00000586417 DCAF8L2P0C7V8 631 aa39.19■■■■□ 3.86
ATG4D-204ENST00000586417 DCAF1Q9Y4B6 1507 aa38.95■■■■□ 3.83
ATG4D-204ENST00000586417 NACADO15069 1562 aa38.78■■■■□ 3.8
ATG4D-204ENST00000586417 MYO15BQ96JP2 1530 aa38.77■■■■□ 3.8
ATG4D-204ENST00000586417 RB1CC1Q8TDY2 1594 aa38.64■■■■□ 3.78
ATG4D-204ENST00000586417 SCRIBQ14160 1630 aa38.05■■■■□ 3.68
ATG4D-204ENST00000586417 SHROOM4Q9ULL8 1493 aa37.94■■■■□ 3.66
ATG4D-204ENST00000586417 UNC13AQ9UPW8 1703 aa37.92■■■■□ 3.66
ATG4D-204ENST00000586417 BICRAQ9NZM4 1560 aa37.55■■■■□ 3.6
ATG4D-204ENST00000586417 PABPN1Q86U42 306 aaKnown RBP eCLIP37.51■■■■□ 3.6
ATG4D-204ENST00000586417 CECR2Q9BXF3 1484 aa36.73■■■■□ 3.47
ATG4D-204ENST00000586417 EIF4G1Q04637 1599 aaKnown RBP36.45■■■■□ 3.43
ATG4D-204ENST00000586417 BAZ1AQ9NRL2 1556 aaPredicted RBP36.44■■■■□ 3.42
ATG4D-204ENST00000586417 MROH2BQ7Z745 1585 aa36.42■■■■□ 3.42
ATG4D-204ENST00000586417 SMARCA4P51532 1647 aa36.41■■■■□ 3.42
ATG4D-204ENST00000586417 SUPT5HO00267 1087 aaKnown RBP36.3■■■■□ 3.4
ATG4D-204ENST00000586417 RSF1Q96T23 1441 aaPredicted RBP36.28■■■■□ 3.4
ATG4D-204ENST00000586417 CC2D2AQ9P2K1 1620 aa36.12■■■■□ 3.37
ATG4D-204ENST00000586417 WIZO95785 1651 aa36.09■■■■□ 3.37
ATG4D-204ENST00000586417 ATAD2BQ9ULI0 1458 aa35.99■■■■□ 3.35
ATG4D-204ENST00000586417 PEG3Q9GZU2 1588 aa35.98■■■■□ 3.35
ATG4D-204ENST00000586417 DNAJC5BQ9UF47 199 aa35.97■■■■□ 3.35
ATG4D-204ENST00000586417 SMARCA2P51531 1590 aa35.93■■■■□ 3.34
ATG4D-204ENST00000586417 NCAPD3P42695 1498 aa35.81■■■■□ 3.32
ATG4D-204ENST00000586417 BAZ1BQ9UIG0 1483 aaKnown RBP35.73■■■■□ 3.31
ATG4D-204ENST00000586417 HMGXB3Q12766 1538 aa35.68■■■■□ 3.3
ATG4D-204ENST00000586417 TOP2AP11388 1531 aaKnown RBP35.65■■■■□ 3.3
ATG4D-204ENST00000586417 CCDC88BA6NC98 1476 aa35.29■■■■□ 3.24
ATG4D-204ENST00000586417 CHIC1Q5VXU3 224 aa34.85■■■■□ 3.17
ATG4D-204ENST00000586417 NESP48681 1621 aa34.84■■■■□ 3.17
ATG4D-204ENST00000586417 CADPSQ9ULU8 1353 aa34.84■■■■□ 3.17
ATG4D-204ENST00000586417 CFTRP13569 1480 aa34.81■■■■□ 3.16
ATG4D-204ENST00000586417 LAMC3Q9Y6N6 1575 aa34.71■■■■□ 3.15
ATG4D-204ENST00000586417 PRDM2Q13029 1718 aa34.6■■■■□ 3.13
ATG4D-204ENST00000586417 FANCD2Q9BXW9 1451 aa34.45■■■■□ 3.11
ATG4D-204ENST00000586417 PDS5BQ9NTI5 1447 aa34.45■■■■□ 3.11
ATG4D-204ENST00000586417 KIF21AQ7Z4S6 1674 aa34.41■■■■□ 3.1
ATG4D-204ENST00000586417 ABCC8Q09428 1581 aa34.33■■■■□ 3.09
ATG4D-204ENST00000586417 CEP164Q9UPV0 1460 aa34.31■■■■□ 3.08
ATG4D-204ENST00000586417 ERCC6Q03468 1493 aa34.27■■■■□ 3.08
ATG4D-204ENST00000586417 WRNQ14191 1432 aaPredicted RBP eCLIP34.15■■■■□ 3.06
ATG4D-204ENST00000586417 TRIM41Q8WV44 630 aa34.11■■■■□ 3.05
ATG4D-204ENST00000586417 CUX1P39880 1505 aa34.1■■■■□ 3.05
ATG4D-204ENST00000586417 URB2Q14146 1524 aaKnown RBP34.09■■■■□ 3.05
ATG4D-204ENST00000586417 SYNJ1O43426 1573 aa34.08■■■■□ 3.05
ATG4D-204ENST00000586417 MRC2Q9UBG0 1479 aa34.07■■■■□ 3.04
ATG4D-204ENST00000586417 THOC2Q8NI27 1593 aaKnown RBP34.03■■■■□ 3.04
ATG4D-204ENST00000586417 TOPBP1Q92547 1522 aa34■■■■□ 3.03
ATG4D-204ENST00000586417 DNMBPQ6XZF7 1577 aa34■■■■□ 3.03
ATG4D-204ENST00000586417 TOP2BQ02880 1626 aa33.98■■■■□ 3.03
ATG4D-204ENST00000586417 BIVM-ERCC5R4GMW8 1640 aa33.96■■■■□ 3.03
ATG4D-204ENST00000586417 WDR62O43379 1518 aa33.94■■■■□ 3.02
ATG4D-204ENST00000586417 FGD5Q6ZNL6 1462 aa33.83■■■■□ 3.01
ATG4D-204ENST00000586417 POLA1P09884 1462 aaPredicted RBP33.78■■■■□ 3
ATG4D-204ENST00000586417 CUX2O14529 1486 aa33.68■■■□□ 2.98
ATG4D-204ENST00000586417 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
ATG4D-204ENST00000586417 SOGA1O94964 1423 aa33.65■■■□□ 2.98
ATG4D-204ENST00000586417 TARBP1Q13395 1621 aaKnown RBP33.58■■■□□ 2.97
ATG4D-204ENST00000586417 IFT140Q96RY7 1462 aa33.52■■■□□ 2.96
ATG4D-204ENST00000586417 ABCA10Q8WWZ4 1543 aa33.5■■■□□ 2.95
ATG4D-204ENST00000586417 LOC105371045A0A1W2PR82 267 aa33.49■■■□□ 2.95
ATG4D-204ENST00000586417 FAM9AQ8IZU1 332 aaPredicted RBP33.49■■■□□ 2.95
ATG4D-204ENST00000586417 WDR97A6NE52 1622 aa33.49■■■□□ 2.95
ATG4D-204ENST00000586417 RUSC2Q8N2Y8 1516 aa33.46■■■□□ 2.95
ATG4D-204ENST00000586417 ZNF608Q9ULD9 1512 aaPredicted RBP33.43■■■□□ 2.94
ATG4D-204ENST00000586417 TDRD9Q8NDG6 1382 aaKnown RBP33.42■■■□□ 2.94
ATG4D-204ENST00000586417 AQRO60306 1485 aaKnown RBP eCLIP33.35■■■□□ 2.933e-6■■■■□ 19.5
ATG4D-204ENST00000586417 KIF27Q86VH2 1401 aa33.34■■■□□ 2.93
ATG4D-204ENST00000586417 ABCA5Q8WWZ7 1642 aa33.31■■■□□ 2.92
ATG4D-204ENST00000586417 EEA1Q15075 1411 aa33.29■■■□□ 2.92
ATG4D-204ENST00000586417 EIF4G3O43432 1585 aaKnown RBP33.28■■■□□ 2.92
ATG4D-204ENST00000586417 GAPVD1Q14C86 1478 aa33.27■■■□□ 2.92
ATG4D-204ENST00000586417 PBRM1Q86U86 1689 aa33.16■■■□□ 2.9
ATG4D-204ENST00000586417 IGF1RP08069 1367 aa33.16■■■□□ 2.9
ATG4D-204ENST00000586417 CSRNP3Q8WYN3 585 aa33.14■■■□□ 2.9
ATG4D-204ENST00000586417 GRIN2BQ13224 1484 aa33.11■■■□□ 2.89
ATG4D-204ENST00000586417 ERICH3Q5RHP9 1530 aa33.08■■■□□ 2.89
ATG4D-204ENST00000586417 SNAPC4Q5SXM2 1469 aa33.01■■■□□ 2.87
ATG4D-204ENST00000586417 EHMT2Q96KQ7 1210 aa33.01■■■□□ 2.87
ATG4D-204ENST00000586417 CARMIL1Q5VZK9 1371 aa32.96■■■□□ 2.87
ATG4D-204ENST00000586417 CUL7Q14999 1698 aa32.94■■■□□ 2.86
ATG4D-204ENST00000586417 PRXQ9BXM0 1461 aa32.94■■■□□ 2.86
ATG4D-204ENST00000586417 ADAMTS12P58397 1594 aa32.92■■■□□ 2.86
ATG4D-204ENST00000586417 MAGI1Q96QZ7 1491 aaPredicted RBP32.91■■■□□ 2.86
ATG4D-204ENST00000586417 KIF21BO75037 1637 aa32.9■■■□□ 2.86
ATG4D-204ENST00000586417 FHAD1B1AJZ9 1412 aa32.87■■■□□ 2.85
ATG4D-204ENST00000586417 RAPGEF2Q9Y4G8 1499 aa32.86■■■□□ 2.85
ATG4D-204ENST00000586417 GOLGA3Q08378 1498 aa32.85■■■□□ 2.85
ATG4D-204ENST00000586417 SYNJ2O15056 1496 aa32.8■■■□□ 2.84
ATG4D-204ENST00000586417 FBLN2P98095 1184 aa32.79■■■□□ 2.84
ATG4D-204ENST00000586417 CHMP7Q8WUX9 453 aaPredicted RBP32.77■■■□□ 2.84
ATG4D-204ENST00000586417 TNIKQ9UKE5 1360 aa32.76■■■□□ 2.84
ATG4D-204ENST00000586417 CHD1O14646 1710 aa32.73■■■□□ 2.83
ATG4D-204ENST00000586417 GRIN2AQ12879 1464 aa32.72■■■□□ 2.83
ATG4D-204ENST00000586417 UBTFP17480 764 aaKnown RBP32.65■■■□□ 2.82
ATG4D-204ENST00000586417 CEP162Q5TB80 1403 aa32.6■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms