RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RANGAP1P46060 587 aaPredicted RBP21.76■■□□□ 1.07
CCDC40-209ENST00000573474 CTTNBP2Q8WZ74 1663 aa21.75■■□□□ 1.07
CCDC40-209ENST00000573474 KIAA0586Q9BVV6 1533 aa21.69■■□□□ 1.06
CCDC40-209ENST00000573474 NUP160Q12769 1436 aa21.68■■□□□ 1.06
CCDC40-209ENST00000573474 ARHGAP35Q9NRY4 1499 aa21.65■■□□□ 1.06
CCDC40-209ENST00000573474 IQGAP2Q13576 1575 aa21.65■■□□□ 1.06
CCDC40-209ENST00000573474 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
CCDC40-209ENST00000573474 CHD1O14646 1710 aa21.63■■□□□ 1.05
CCDC40-209ENST00000573474 EFCAB5A4FU69 1503 aa21.61■■□□□ 1.05
CCDC40-209ENST00000573474 ARAP1Q96P48 1450 aa21.6■■□□□ 1.05
CCDC40-209ENST00000573474 UGGT2Q9NYU1 1516 aa21.57■■□□□ 1.04
CCDC40-209ENST00000573474 VPS8Q8N3P4 1428 aa21.56■■□□□ 1.04
CCDC40-209ENST00000573474 SAMD9Q5K651 1589 aa21.55■■□□□ 1.04
CCDC40-209ENST00000573474 P3H3Q8IVL6 736 aa21.54■■□□□ 1.04
CCDC40-209ENST00000573474 JPH4Q96JJ6 628 aa21.53■■□□□ 1.04
CCDC40-209ENST00000573474 FHOD3Q2V2M9 1422 aa21.5■■□□□ 1.03
CCDC40-209ENST00000573474 DISP1Q96F81 1524 aa21.46■■□□□ 1.03
CCDC40-209ENST00000573474 FMN1Q68DA7 1419 aa21.44■■□□□ 1.02
CCDC40-209ENST00000573474 CARMIL2Q6F5E8 1435 aa21.44■■□□□ 1.02
CCDC40-209ENST00000573474 CLASP1Q7Z460 1538 aa21.43■■□□□ 1.02
CCDC40-209ENST00000573474 KIAA0556O60303 1618 aa21.42■■□□□ 1.02
CCDC40-209ENST00000573474 OSCARQ8IYS5 282 aa21.42■■□□□ 1.02
CCDC40-209ENST00000573474 APLP2Q06481 763 aa21.39■■□□□ 1.01
CCDC40-209ENST00000573474 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
CCDC40-209ENST00000573474 PRG4Q92954 1404 aaPredicted RBP21.38■■□□□ 1.01
CCDC40-209ENST00000573474 CASKIN1Q8WXD9 1431 aa21.36■■□□□ 1.01
CCDC40-209ENST00000573474 FYCO1Q9BQS8 1478 aa21.32■■□□□ 1
CCDC40-209ENST00000573474 PCF11O94913 1555 aaKnown RBP21.31■■□□□ 1
CCDC40-209ENST00000573474 ATP1B4Q9UN42 357 aaPredicted RBP21.3■■□□□ 1
CCDC40-209ENST00000573474 PPARGC1BQ86YN6 1023 aaKnown RBP21.28■■□□□ 1
CCDC40-209ENST00000573474 TTBK1Q5TCY1 1321 aaPredicted RBP21.28■■□□□ 1
CCDC40-209ENST00000573474 MAP3K1Q13233 1512 aa21.27■■□□□ 1
CCDC40-209ENST00000573474 PTPRGP23470 1445 aa21.25■□□□□ 0.99
CCDC40-209ENST00000573474 ERCC6L2Q5T890 1561 aa21.22■□□□□ 0.99
CCDC40-209ENST00000573474 HECW1Q76N89 1606 aa21.21■□□□□ 0.99
CCDC40-209ENST00000573474 TIAM1Q13009 1591 aa21.2■□□□□ 0.98
CCDC40-209ENST00000573474 RAPGEF6Q8TEU7 1601 aa21.18■□□□□ 0.98
CCDC40-209ENST00000573474 KANK4Q5T7N3 995 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-209ENST00000573474 CCDC18Q5T9S5 1454 aa21.17■□□□□ 0.98
CCDC40-209ENST00000573474 PLB1Q6P1J6 1458 aa21.17■□□□□ 0.98
CCDC40-209ENST00000573474 CFAP43Q8NDM7 1665 aa21.15■□□□□ 0.98
CCDC40-209ENST00000573474 ABCA8O94911 1581 aa21.15■□□□□ 0.98
CCDC40-209ENST00000573474 EPRSP07814 1512 aaKnown RBP21.14■□□□□ 0.98
CCDC40-209ENST00000573474 TRIM26Q12899 539 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-209ENST00000573474 NUP153P49790 1475 aaKnown RBP21.13■□□□□ 0.97
CCDC40-209ENST00000573474 LRRC9Q6ZRR7 1453 aa21.13■□□□□ 0.97
CCDC40-209ENST00000573474 UACAQ9BZF9 1416 aa21.12■□□□□ 0.97
CCDC40-209ENST00000573474 LRRIQ1Q96JM4 1722 aa21.1■□□□□ 0.97
CCDC40-209ENST00000573474 ARID3CA6NKF2 412 aa21.07■□□□□ 0.96
CCDC40-209ENST00000573474 CDK13Q14004 1512 aaKnown RBP21.07■□□□□ 0.96
CCDC40-209ENST00000573474 MTUS2Q5JR59 1369 aa21.06■□□□□ 0.96
CCDC40-209ENST00000573474 CDK11AQ9UQ88 783 aaPredicted RBP21.05■□□□□ 0.96
CCDC40-209ENST00000573474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.04■□□□□ 0.96
CCDC40-209ENST00000573474 HNRNPUL2Q1KMD3 747 aaKnown RBP21.04■□□□□ 0.96
CCDC40-209ENST00000573474 ABCC2Q92887 1545 aa21.04■□□□□ 0.96
CCDC40-209ENST00000573474 UHRF1BP1LA0JNW5 1464 aa21.03■□□□□ 0.96
CCDC40-209ENST00000573474 ATP10BO94823 1461 aa21.02■□□□□ 0.96
CCDC40-209ENST00000573474 EHBP1L1Q8N3D4 1523 aa21■□□□□ 0.95
CCDC40-209ENST00000573474 PCGF6Q9BYE7 350 aa21■□□□□ 0.95
CCDC40-209ENST00000573474 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
CCDC40-209ENST00000573474 MAGI3Q5TCQ9 1506 aa20.98■□□□□ 0.95
CCDC40-209ENST00000573474 PLEKHD1A6NEE1 506 aa20.96■□□□□ 0.95
CCDC40-209ENST00000573474 TROQ12816 1431 aaPredicted RBP20.94■□□□□ 0.94
CCDC40-209ENST00000573474 KDM5BQ9UGL1 1544 aa20.92■□□□□ 0.94
CCDC40-209ENST00000573474 SUPT6HQ7KZ85 1726 aaKnown RBP20.92■□□□□ 0.94
CCDC40-209ENST00000573474 NCOA2Q15596 1464 aa20.91■□□□□ 0.94
CCDC40-209ENST00000573474 PHLDB1Q86UU1 1377 aa20.91■□□□□ 0.94
CCDC40-209ENST00000573474 ADCY10Q96PN6 1610 aa20.9■□□□□ 0.94
CCDC40-209ENST00000573474 RIMBP3CA6NJZ7 1639 aa20.89■□□□□ 0.94
CCDC40-209ENST00000573474 RIMBP3BA6NNM3 1639 aa20.89■□□□□ 0.94
CCDC40-209ENST00000573474 RIMBP3Q9UFD9 1639 aa20.89■□□□□ 0.94
CCDC40-209ENST00000573474 RRBP1Q9P2E9 1410 aaKnown RBP20.87■□□□□ 0.93
CCDC40-209ENST00000573474 ZCCHC11Q5TAX3 1644 aaKnown RBP20.86■□□□□ 0.93
CCDC40-209ENST00000573474 CCNB3Q8WWL7 1395 aa20.85■□□□□ 0.93
CCDC40-209ENST00000573474 NPM1P06748 294 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC40-209ENST00000573474 CYB5RLQ6IPT4 315 aa20.83■□□□□ 0.93
CCDC40-209ENST00000573474 MYOM3Q5VTT5 1437 aa20.83■□□□□ 0.93
CCDC40-209ENST00000573474 FGD6Q6ZV73 1430 aa20.79■□□□□ 0.92
CCDC40-209ENST00000573474 KIF14Q15058 1648 aa20.78■□□□□ 0.92
CCDC40-209ENST00000573474 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.76■□□□□ 0.91
CCDC40-209ENST00000573474 MIA2Q96PC5 1412 aa20.76■□□□□ 0.91
CCDC40-209ENST00000573474 ABCC10Q5T3U5 1492 aa20.75■□□□□ 0.91
CCDC40-209ENST00000573474 FAM50AQ14320 339 aaKnown RBP20.74■□□□□ 0.91
CCDC40-209ENST00000573474 KCNH8Q96L42 1107 aa20.74■□□□□ 0.91
CCDC40-209ENST00000573474 WDR7Q9Y4E6 1490 aa20.73■□□□□ 0.91
CCDC40-209ENST00000573474 ASXL2Q76L83 1435 aa20.72■□□□□ 0.91
CCDC40-209ENST00000573474 GPATCH8Q9UKJ3 1502 aaKnown RBP20.72■□□□□ 0.91
CCDC40-209ENST00000573474 TCOF1Q13428 1488 aaKnown RBP20.69■□□□□ 0.9
CCDC40-209ENST00000573474 CFDP1Q9UEE9 299 aaPredicted RBP20.69■□□□□ 0.9
CCDC40-209ENST00000573474 PTPN23Q9H3S7 1636 aa20.68■□□□□ 0.9
CCDC40-209ENST00000573474 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.68■□□□□ 0.9
CCDC40-209ENST00000573474 ITSN2Q9NZM3 1697 aa20.67■□□□□ 0.9
CCDC40-209ENST00000573474 ITGAEP38570 1179 aa20.63■□□□□ 0.89
CCDC40-209ENST00000573474 CDC42BPAQ5VT25 1732 aa20.63■□□□□ 0.89
CCDC40-209ENST00000573474 TTC37Q6PGP7 1564 aa20.63■□□□□ 0.89
CCDC40-209ENST00000573474 MAPKBP1O60336 1514 aa20.62■□□□□ 0.89
CCDC40-209ENST00000573474 ZNF644Q9H582 1327 aaPredicted RBP20.6■□□□□ 0.89
CCDC40-209ENST00000573474 ZNF777Q9ULD5 760 aaPredicted RBP20.6■□□□□ 0.89
CCDC40-209ENST00000573474 PLCH2O75038 1416 aa20.6■□□□□ 0.89
CCDC40-209ENST00000573474 PREX2Q70Z35 1606 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 218.2 ms