RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NISCHQ9Y2I1 1504 aa31.57■■■□□ 2.64
CCDC40-209ENST00000573474 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
CCDC40-209ENST00000573474 ZCCHC6Q5VYS8 1495 aaKnown RBP26.46■■□□□ 1.83
CCDC40-209ENST00000573474 ABCC9O60706 1549 aa26.37■■□□□ 1.81
CCDC40-209ENST00000573474 DCAF8L2P0C7V8 631 aa26.15■■□□□ 1.78
CCDC40-209ENST00000573474 DCAF1Q9Y4B6 1507 aa26.14■■□□□ 1.78
CCDC40-209ENST00000573474 MYO15BQ96JP2 1530 aa25.95■■□□□ 1.74
CCDC40-209ENST00000573474 NACADO15069 1562 aa25.85■■□□□ 1.73
CCDC40-209ENST00000573474 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
CCDC40-209ENST00000573474 SHROOM4Q9ULL8 1493 aa25.49■■□□□ 1.67
CCDC40-209ENST00000573474 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
CCDC40-209ENST00000573474 UNC13AQ9UPW8 1703 aa25.04■■□□□ 1.6
CCDC40-209ENST00000573474 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
CCDC40-209ENST00000573474 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.57
CCDC40-209ENST00000573474 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
CCDC40-209ENST00000573474 SUPT5HO00267 1087 aaKnown RBP24.43■■□□□ 1.5
CCDC40-209ENST00000573474 BAZ1AQ9NRL2 1556 aaPredicted RBP24.4■■□□□ 1.5
CCDC40-209ENST00000573474 RSF1Q96T23 1441 aaPredicted RBP24.38■■□□□ 1.49
CCDC40-209ENST00000573474 MROH2BQ7Z745 1585 aa24.35■■□□□ 1.49
CCDC40-209ENST00000573474 SMARCA4P51532 1647 aa24.3■■□□□ 1.48
CCDC40-209ENST00000573474 EIF4G1Q04637 1599 aaKnown RBP24.15■■□□□ 1.46
CCDC40-209ENST00000573474 WIZO95785 1651 aa24.11■■□□□ 1.45
CCDC40-209ENST00000573474 PEG3Q9GZU2 1588 aa24.04■■□□□ 1.44
CCDC40-209ENST00000573474 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
CCDC40-209ENST00000573474 SMARCA2P51531 1590 aa23.99■■□□□ 1.43
CCDC40-209ENST00000573474 TOP2AP11388 1531 aaKnown RBP23.9■■□□□ 1.42
CCDC40-209ENST00000573474 NCAPD3P42695 1498 aa23.87■■□□□ 1.41
CCDC40-209ENST00000573474 CC2D2AQ9P2K1 1620 aa23.85■■□□□ 1.41
CCDC40-209ENST00000573474 BAZ1BQ9UIG0 1483 aaKnown RBP23.85■■□□□ 1.41
CCDC40-209ENST00000573474 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
CCDC40-209ENST00000573474 CCDC88BA6NC98 1476 aa23.66■■□□□ 1.38
CCDC40-209ENST00000573474 DNAJC5BQ9UF47 199 aa23.52■■□□□ 1.36
CCDC40-209ENST00000573474 CHIC1Q5VXU3 224 aa23.27■■□□□ 1.32
CCDC40-209ENST00000573474 CFTRP13569 1480 aa23.24■■□□□ 1.31
CCDC40-209ENST00000573474 CADPSQ9ULU8 1353 aa23.24■■□□□ 1.31
CCDC40-209ENST00000573474 LAMC3Q9Y6N6 1575 aa23.08■■□□□ 1.29
CCDC40-209ENST00000573474 NESP48681 1621 aa23.04■■□□□ 1.28
CCDC40-209ENST00000573474 PRDM2Q13029 1718 aa23.04■■□□□ 1.28
CCDC40-209ENST00000573474 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
CCDC40-209ENST00000573474 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
CCDC40-209ENST00000573474 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
CCDC40-209ENST00000573474 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
CCDC40-209ENST00000573474 PDS5BQ9NTI5 1447 aa22.95■■□□□ 1.26
CCDC40-209ENST00000573474 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
CCDC40-209ENST00000573474 SYNJ1O43426 1573 aa22.83■■□□□ 1.25
CCDC40-209ENST00000573474 TOP2BQ02880 1626 aa22.79■■□□□ 1.24
CCDC40-209ENST00000573474 CUX1P39880 1505 aa22.79■■□□□ 1.24
CCDC40-209ENST00000573474 BIVM-ERCC5R4GMW8 1640 aa22.76■■□□□ 1.23
CCDC40-209ENST00000573474 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
CCDC40-209ENST00000573474 DNMBPQ6XZF7 1577 aa22.69■■□□□ 1.22
CCDC40-209ENST00000573474 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
CCDC40-209ENST00000573474 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
CCDC40-209ENST00000573474 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
CCDC40-209ENST00000573474 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
CCDC40-209ENST00000573474 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
CCDC40-209ENST00000573474 SOGA1O94964 1423 aa22.56■■□□□ 1.2
CCDC40-209ENST00000573474 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
CCDC40-209ENST00000573474 EEA1Q15075 1411 aa22.54■■□□□ 1.2
CCDC40-209ENST00000573474 POLA1P09884 1462 aaPredicted RBP22.53■■□□□ 1.2
CCDC40-209ENST00000573474 WDR62O43379 1518 aa22.52■■□□□ 1.19
CCDC40-209ENST00000573474 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
CCDC40-209ENST00000573474 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
CCDC40-209ENST00000573474 RAD54L2Q9Y4B4 1467 aa22.44■■□□□ 1.18
CCDC40-209ENST00000573474 KIF27Q86VH2 1401 aa22.43■■□□□ 1.18
CCDC40-209ENST00000573474 CSRNP3Q8WYN3 585 aa22.43■■□□□ 1.18
CCDC40-209ENST00000573474 ABCA10Q8WWZ4 1543 aa22.41■■□□□ 1.18
CCDC40-209ENST00000573474 CUX2O14529 1486 aa22.41■■□□□ 1.18
CCDC40-209ENST00000573474 LOC105371045A0A1W2PR82 267 aa22.34■■□□□ 1.17
CCDC40-209ENST00000573474 IFT140Q96RY7 1462 aa22.34■■□□□ 1.17
CCDC40-209ENST00000573474 TARBP1Q13395 1621 aaKnown RBP22.33■■□□□ 1.17
CCDC40-209ENST00000573474 WDR97A6NE52 1622 aa22.3■■□□□ 1.16
CCDC40-209ENST00000573474 IGF1RP08069 1367 aa22.26■■□□□ 1.15
CCDC40-209ENST00000573474 TDRD9Q8NDG6 1382 aaKnown RBP22.26■■□□□ 1.15
CCDC40-209ENST00000573474 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
CCDC40-209ENST00000573474 ABCA5Q8WWZ7 1642 aa22.21■■□□□ 1.15
CCDC40-209ENST00000573474 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.14
CCDC40-209ENST00000573474 KIF21BO75037 1637 aa22.2■■□□□ 1.14
CCDC40-209ENST00000573474 PRXQ9BXM0 1461 aa22.19■■□□□ 1.14
CCDC40-209ENST00000573474 GOLGA3Q08378 1498 aa22.17■■□□□ 1.14
CCDC40-209ENST00000573474 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
CCDC40-209ENST00000573474 AQRO60306 1485 aaKnown RBP eCLIP22.16■■□□□ 1.14
CCDC40-209ENST00000573474 ERICH3Q5RHP9 1530 aa22.16■■□□□ 1.14
CCDC40-209ENST00000573474 CARMIL1Q5VZK9 1371 aa22.14■■□□□ 1.14
CCDC40-209ENST00000573474 RAPGEF2Q9Y4G8 1499 aa22.11■■□□□ 1.13
CCDC40-209ENST00000573474 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
CCDC40-209ENST00000573474 UBTFP17480 764 aaKnown RBP22.1■■□□□ 1.13
CCDC40-209ENST00000573474 CUL7Q14999 1698 aa22.08■■□□□ 1.13
CCDC40-209ENST00000573474 TNIKQ9UKE5 1360 aa22.07■■□□□ 1.12
CCDC40-209ENST00000573474 EIF4G3O43432 1585 aaKnown RBP22.07■■□□□ 1.12
CCDC40-209ENST00000573474 PBRM1Q86U86 1689 aa22.05■■□□□ 1.12
CCDC40-209ENST00000573474 FHAD1B1AJZ9 1412 aa22■■□□□ 1.11
CCDC40-209ENST00000573474 SNAPC4Q5SXM2 1469 aa21.96■■□□□ 1.11
CCDC40-209ENST00000573474 MAGI1Q96QZ7 1491 aaPredicted RBP21.95■■□□□ 1.1
CCDC40-209ENST00000573474 ADAMTS12P58397 1594 aa21.95■■□□□ 1.1
CCDC40-209ENST00000573474 CEP162Q5TB80 1403 aa21.89■■□□□ 1.1
CCDC40-209ENST00000573474 SYNJ2O15056 1496 aa21.86■■□□□ 1.09
CCDC40-209ENST00000573474 CHMP7Q8WUX9 453 aaPredicted RBP21.84■■□□□ 1.09
CCDC40-209ENST00000573474 GRIN2AQ12879 1464 aa21.81■■□□□ 1.08
CCDC40-209ENST00000573474 CLIP1P30622 1438 aa21.8■■□□□ 1.08
CCDC40-209ENST00000573474 FBLN2P98095 1184 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms