RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KDM4FA0A1W2PPD8 638 aa34.92■■■■□ 3.18
VPS53-210ENST00000571456 PRG4Q92954 1404 aaPredicted RBP34.9■■■■□ 3.18
VPS53-210ENST00000571456 MAPKBP1O60336 1514 aa34.81■■■■□ 3.16
VPS53-210ENST00000571456 NPM1P06748 294 aaKnown RBP eCLIP34.81■■■■□ 3.16
VPS53-210ENST00000571456 DIP2BQ9P265 1576 aa34.81■■■■□ 3.16
VPS53-210ENST00000571456 KDM6BO15054 1643 aa34.81■■■■□ 3.16
VPS53-210ENST00000571456 JPH4Q96JJ6 628 aa34.79■■■■□ 3.16
VPS53-210ENST00000571456 ERICH3Q5RHP9 1530 aa34.76■■■■□ 3.16
VPS53-210ENST00000571456 KIF27Q86VH2 1401 aa34.7■■■■□ 3.15
VPS53-210ENST00000571456 TSPOAP1O95153 1857 aa34.69■■■■□ 3.14
VPS53-210ENST00000571456 ADCY10Q96PN6 1610 aa34.66■■■■□ 3.14
VPS53-210ENST00000571456 CHIC1Q5VXU3 224 aa34.61■■■■□ 3.13
VPS53-210ENST00000571456 RUSC2Q8N2Y8 1516 aa34.6■■■■□ 3.13
VPS53-210ENST00000571456 CUL7Q14999 1698 aa34.45■■■■□ 3.11
VPS53-210ENST00000571456 IGF1RP08069 1367 aa34.42■■■■□ 3.1
VPS53-210ENST00000571456 EEA1Q15075 1411 aa34.4■■■■□ 3.1
VPS53-210ENST00000571456 ADGRL1O94910 1474 aa34.39■■■■□ 3.1
VPS53-210ENST00000571456 KIAA0586Q9BVV6 1533 aa34.32■■■■□ 3.08
VPS53-210ENST00000571456 PPRC1Q5VV67 1664 aaKnown RBP34.28■■■■□ 3.08
VPS53-210ENST00000571456 HECW2Q9P2P5 1572 aa34.28■■■■□ 3.08
VPS53-210ENST00000571456 CARMIL1Q5VZK9 1371 aa34.25■■■■□ 3.07
VPS53-210ENST00000571456 GLI2P10070 1586 aa34.22■■■■□ 3.07
VPS53-210ENST00000571456 PTPRGP23470 1445 aa34.21■■■■□ 3.07
VPS53-210ENST00000571456 ABCC2Q92887 1545 aa34.19■■■■□ 3.06
VPS53-210ENST00000571456 PLB1Q6P1J6 1458 aa34.17■■■■□ 3.06
VPS53-210ENST00000571456 ASXL2Q76L83 1435 aa34.17■■■■□ 3.06
VPS53-210ENST00000571456 CSRNP3Q8WYN3 585 aa34.15■■■■□ 3.06
VPS53-210ENST00000571456 RAPGEF2Q9Y4G8 1499 aa34.14■■■■□ 3.06
VPS53-210ENST00000571456 TTBK1Q5TCY1 1321 aaPredicted RBP34.11■■■■□ 3.05
VPS53-210ENST00000571456 PRXQ9BXM0 1461 aa34.1■■■■□ 3.05
VPS53-210ENST00000571456 COL17A1Q9UMD9 1497 aaPredicted RBP34.1■■■■□ 3.05
VPS53-210ENST00000571456 TNIKQ9UKE5 1360 aa34.06■■■■□ 3.04
VPS53-210ENST00000571456 CARMIL2Q6F5E8 1435 aa34.03■■■■□ 3.04
VPS53-210ENST00000571456 MAP3K4Q9Y6R4 1608 aa34■■■■□ 3.03
VPS53-210ENST00000571456 UHRF1BP1LA0JNW5 1464 aa34■■■■□ 3.03
VPS53-210ENST00000571456 TEX14Q8IWB6 1497 aa33.98■■■■□ 3.03
VPS53-210ENST00000571456 EPRSP07814 1512 aaKnown RBP33.95■■■■□ 3.03
VPS53-210ENST00000571456 KIF21BO75037 1637 aa33.94■■■■□ 3.02
VPS53-210ENST00000571456 FAM9AQ8IZU1 332 aaPredicted RBP33.92■■■■□ 3.02
VPS53-210ENST00000571456 UACAQ9BZF9 1416 aa33.92■■■■□ 3.02
VPS53-210ENST00000571456 FBXO41Q8TF61 875 aa33.9■■■■□ 3.02
VPS53-210ENST00000571456 KDM5BQ9UGL1 1544 aa33.85■■■■□ 3.01
VPS53-210ENST00000571456 IQGAP2Q13576 1575 aa33.84■■■■□ 3.01
VPS53-210ENST00000571456 CTTNBP2Q8WZ74 1663 aa33.83■■■■□ 3.01
VPS53-210ENST00000571456 ZCCHC11Q5TAX3 1644 aaKnown RBP33.79■■■■□ 3
VPS53-210ENST00000571456 DISP1Q96F81 1524 aa33.75■■■□□ 2.99
VPS53-210ENST00000571456 GOLGA3Q08378 1498 aa33.74■■■□□ 2.99
VPS53-210ENST00000571456 WDR7Q9Y4E6 1490 aa33.66■■■□□ 2.98
VPS53-210ENST00000571456 UGGT2Q9NYU1 1516 aa33.65■■■□□ 2.98
VPS53-210ENST00000571456 MAGI3Q5TCQ9 1506 aa33.6■■■□□ 2.97
VPS53-210ENST00000571456 CFAP43Q8NDM7 1665 aa33.58■■■□□ 2.97
VPS53-210ENST00000571456 CD109Q6YHK3 1445 aa33.58■■■□□ 2.97
VPS53-210ENST00000571456 KIAA0556O60303 1618 aa33.54■■■□□ 2.96
VPS53-210ENST00000571456 UBTFP17480 764 aaKnown RBP33.53■■■□□ 2.96
VPS53-210ENST00000571456 KCNH8Q96L42 1107 aa33.46■■■□□ 2.95
VPS53-210ENST00000571456 PTPRMP28827 1452 aa33.43■■■□□ 2.94
VPS53-210ENST00000571456 ADAMTSL3P82987 1691 aa33.4■■■□□ 2.94
VPS53-210ENST00000571456 EFCAB5A4FU69 1503 aa33.39■■■□□ 2.94
VPS53-210ENST00000571456 SAMD9Q5K651 1589 aa33.38■■■□□ 2.93
VPS53-210ENST00000571456 ARAP3Q8WWN8 1544 aa33.38■■■□□ 2.93
VPS53-210ENST00000571456 EHMT2Q96KQ7 1210 aa33.32■■■□□ 2.92
VPS53-210ENST00000571456 ABCA8O94911 1581 aa33.31■■■□□ 2.92
VPS53-210ENST00000571456 LMTK3Q96Q04 1460 aa33.31■■■□□ 2.92
VPS53-210ENST00000571456 PCF11O94913 1555 aaKnown RBP33.3■■■□□ 2.92
VPS53-210ENST00000571456 BCORL1Q5H9F3 1711 aa33.22■■■□□ 2.91
VPS53-210ENST00000571456 PHLDB1Q86UU1 1377 aa33.2■■■□□ 2.9
VPS53-210ENST00000571456 MADDQ8WXG6 1647 aa33.19■■■□□ 2.9
VPS53-210ENST00000571456 ARHGAP35Q9NRY4 1499 aa33.13■■■□□ 2.89
VPS53-210ENST00000571456 RAPGEF3O95398 923 aa33.13■■■□□ 2.89
VPS53-210ENST00000571456 RANGAP1P46060 587 aaPredicted RBP33.13■■■□□ 2.89
VPS53-210ENST00000571456 ARID4BQ4LE39 1312 aaPredicted RBP33.12■■■□□ 2.89
VPS53-210ENST00000571456 ABCA9Q8IUA7 1624 aa33.1■■■□□ 2.89
VPS53-210ENST00000571456 CLIP1P30622 1438 aa33.1■■■□□ 2.89
VPS53-210ENST00000571456 P3H3Q8IVL6 736 aa33.09■■■□□ 2.89
VPS53-210ENST00000571456 FHOD3Q2V2M9 1422 aa33.09■■■□□ 2.89
VPS53-210ENST00000571456 LOC105371045A0A1W2PR82 267 aa33.07■■■□□ 2.88
VPS53-210ENST00000571456 FMN1Q68DA7 1419 aa33.06■■■□□ 2.88
VPS53-210ENST00000571456 RIMS1Q86UR5 1692 aaKnown RBP33.05■■■□□ 2.88
VPS53-210ENST00000571456 NEO1Q92859 1461 aa33.05■■■□□ 2.88
VPS53-210ENST00000571456 ARID3CA6NKF2 412 aa33.03■■■□□ 2.88
VPS53-210ENST00000571456 CERKQ8TCT0 537 aa33.03■■■□□ 2.88
VPS53-210ENST00000571456 CEP162Q5TB80 1403 aa33.02■■■□□ 2.88
VPS53-210ENST00000571456 FRMPD1Q5SYB0 1578 aa33.02■■■□□ 2.88
VPS53-210ENST00000571456 ATP10BO94823 1461 aa33.02■■■□□ 2.88
VPS53-210ENST00000571456 HSPA2P54652 639 aa33.02■■■□□ 2.88
VPS53-210ENST00000571456 RAPGEF6Q8TEU7 1601 aa32.99■■■□□ 2.87
VPS53-210ENST00000571456 SOCS7O14512 581 aa32.96■■■□□ 2.87
VPS53-210ENST00000571456 ILDR2Q71H61 639 aa32.94■■■□□ 2.86
VPS53-210ENST00000571456 DISP3Q9P2K9 1392 aa32.93■■■□□ 2.86
VPS53-210ENST00000571456 ARHGEF40Q8TER5 1519 aa32.92■■■□□ 2.86
VPS53-210ENST00000571456 PLPPR3Q6T4P5 718 aa32.86■■■□□ 2.85
VPS53-210ENST00000571456 HECW1Q76N89 1606 aa32.83■■■□□ 2.85
VPS53-210ENST00000571456 RICTORQ6R327 1708 aa32.82■■■□□ 2.85
VPS53-210ENST00000571456 POGZQ7Z3K3 1410 aa32.82■■■□□ 2.84
VPS53-210ENST00000571456 NUP153P49790 1475 aaKnown RBP32.81■■■□□ 2.84
VPS53-210ENST00000571456 DENND4BO75064 1496 aaPredicted RBP32.8■■■□□ 2.84
VPS53-210ENST00000571456 CASKIN1Q8WXD9 1431 aa32.79■■■□□ 2.84
VPS53-210ENST00000571456 FANCAO15360 1455 aa32.79■■■□□ 2.84
VPS53-210ENST00000571456 FYCO1Q9BQS8 1478 aa32.76■■■□□ 2.84
VPS53-210ENST00000571456 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms