RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 NISCHQ9Y2I1 1504 aa49.14■■■■■ 5.46
VPS53-210ENST00000571456 ABCC9O60706 1549 aa45.41■■■■■ 4.86
VPS53-210ENST00000571456 CCDC180Q9P1Z9 1646 aa44.42■■■■■ 4.7
VPS53-210ENST00000571456 DNAJC5BQ9UF47 199 aa43.53■■■■■ 4.56
VPS53-210ENST00000571456 RB1CC1Q8TDY2 1594 aa42.78■■■■■ 4.44
VPS53-210ENST00000571456 NACADO15069 1562 aa42.23■■■■■ 4.35
VPS53-210ENST00000571456 PABPN1Q86U42 306 aaKnown RBP eCLIP42.1■■■■■ 4.33
VPS53-210ENST00000571456 UNC13AQ9UPW8 1703 aa41.86■■■■■ 4.29
VPS53-210ENST00000571456 DCAF8L2P0C7V8 631 aa41.77■■■■■ 4.28
VPS53-210ENST00000571456 BICRAQ9NZM4 1560 aa41.57■■■■■ 4.25
VPS53-210ENST00000571456 MYO15BQ96JP2 1530 aa41.3■■■■■ 4.2
VPS53-210ENST00000571456 ZCCHC6Q5VYS8 1495 aaKnown RBP41.02■■■■■ 4.16
VPS53-210ENST00000571456 CECR2Q9BXF3 1484 aa41.02■■■■■ 4.16
VPS53-210ENST00000571456 CC2D2AQ9P2K1 1620 aa40.99■■■■■ 4.15
VPS53-210ENST00000571456 SHROOM4Q9ULL8 1493 aa40.91■■■■■ 4.14
VPS53-210ENST00000571456 DCAF1Q9Y4B6 1507 aa40.82■■■■■ 4.12
VPS53-210ENST00000571456 DNAJC5Q9H3Z4 198 aa40.78■■■■■ 4.12
VPS53-210ENST00000571456 EIF4G1Q04637 1599 aaKnown RBP40.63■■■■■ 4.09
VPS53-210ENST00000571456 SCRIBQ14160 1630 aa40.38■■■■■ 4.05
VPS53-210ENST00000571456 CUX2O14529 1486 aa39.59■■■■□ 3.93
VPS53-210ENST00000571456 ERCC6Q03468 1493 aa39.3■■■■□ 3.88
VPS53-210ENST00000571456 NCAPD3P42695 1498 aa38.99■■■■□ 3.83
VPS53-210ENST00000571456 ATAD2BQ9ULI0 1458 aa38.72■■■■□ 3.79
VPS53-210ENST00000571456 NESP48681 1621 aa38.71■■■■□ 3.79
VPS53-210ENST00000571456 HMGXB3Q12766 1538 aa38.61■■■■□ 3.77
VPS53-210ENST00000571456 SMARCA2P51531 1590 aa38.57■■■■□ 3.76
VPS53-210ENST00000571456 THOC2Q8NI27 1593 aaKnown RBP38.54■■■■□ 3.76
VPS53-210ENST00000571456 TRIM41Q8WV44 630 aa38.53■■■■□ 3.76
VPS53-210ENST00000571456 SMARCA4P51532 1647 aa38.42■■■■□ 3.74
VPS53-210ENST00000571456 BAZ1BQ9UIG0 1483 aaKnown RBP38.29■■■■□ 3.72
VPS53-210ENST00000571456 LAMC3Q9Y6N6 1575 aa38.29■■■■□ 3.72
VPS53-210ENST00000571456 KIF21AQ7Z4S6 1674 aa38.21■■■■□ 3.71
VPS53-210ENST00000571456 BAZ1AQ9NRL2 1556 aaPredicted RBP38.12■■■■□ 3.69
VPS53-210ENST00000571456 PDS5BQ9NTI5 1447 aa38.1■■■■□ 3.69
VPS53-210ENST00000571456 PEG3Q9GZU2 1588 aa38.06■■■■□ 3.68
VPS53-210ENST00000571456 MRC2Q9UBG0 1479 aa37.83■■■■□ 3.65
VPS53-210ENST00000571456 MROH2BQ7Z745 1585 aa37.78■■■■□ 3.64
VPS53-210ENST00000571456 WDR62O43379 1518 aa37.77■■■■□ 3.64
VPS53-210ENST00000571456 CADPSQ9ULU8 1353 aa37.75■■■■□ 3.63
VPS53-210ENST00000571456 OSCARQ8IYS5 282 aa37.61■■■■□ 3.61
VPS53-210ENST00000571456 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
VPS53-210ENST00000571456 CEP164Q9UPV0 1460 aa37.46■■■■□ 3.59
VPS53-210ENST00000571456 WIZO95785 1651 aa37.41■■■■□ 3.58
VPS53-210ENST00000571456 FANCD2Q9BXW9 1451 aa37.33■■■■□ 3.57
VPS53-210ENST00000571456 RIMBP3CA6NJZ7 1639 aa37.24■■■■□ 3.55
VPS53-210ENST00000571456 RIMBP3BA6NNM3 1639 aa37.24■■■■□ 3.55
VPS53-210ENST00000571456 RIMBP3Q9UFD9 1639 aa37.24■■■■□ 3.55
VPS53-210ENST00000571456 TOP2AP11388 1531 aaKnown RBP37.13■■■■□ 3.53
VPS53-210ENST00000571456 CFTRP13569 1480 aa37.1■■■■□ 3.53
VPS53-210ENST00000571456 URB2Q14146 1524 aaKnown RBP37.09■■■■□ 3.53
VPS53-210ENST00000571456 ARHGEF11O15085 1522 aa37■■■■□ 3.51
VPS53-210ENST00000571456 CYB5RLQ6IPT4 315 aa36.8■■■■□ 3.48
VPS53-210ENST00000571456 ZNF608Q9ULD9 1512 aaPredicted RBP36.8■■■■□ 3.48
VPS53-210ENST00000571456 SUPT5HO00267 1087 aaKnown RBP36.77■■■■□ 3.48
VPS53-210ENST00000571456 IFT140Q96RY7 1462 aa36.76■■■■□ 3.48
VPS53-210ENST00000571456 TRHP20396 242 aaPredicted RBP36.73■■■■□ 3.47
VPS53-210ENST00000571456 PRDM2Q13029 1718 aa36.71■■■■□ 3.47
VPS53-210ENST00000571456 CCDC88BA6NC98 1476 aa36.62■■■■□ 3.45
VPS53-210ENST00000571456 ARAP1Q96P48 1450 aa36.56■■■■□ 3.44
VPS53-210ENST00000571456 EIF4G3O43432 1585 aaKnown RBP36.55■■■■□ 3.44
VPS53-210ENST00000571456 CHD1O14646 1710 aa36.51■■■■□ 3.44
VPS53-210ENST00000571456 TOPBP1Q92547 1522 aa36.51■■■■□ 3.44
VPS53-210ENST00000571456 AEBP2Q6ZN18 517 aaPredicted RBP36.45■■■■□ 3.43
VPS53-210ENST00000571456 ABCC8Q09428 1581 aa36.37■■■■□ 3.41
VPS53-210ENST00000571456 AQRO60306 1485 aaKnown RBP eCLIP36.33■■■■□ 3.41
VPS53-210ENST00000571456 FBLN2P98095 1184 aa36.32■■■■□ 3.4
VPS53-210ENST00000571456 DNMBPQ6XZF7 1577 aa36.28■■■■□ 3.4
VPS53-210ENST00000571456 TARBP1Q13395 1621 aaKnown RBP36.27■■■■□ 3.4
VPS53-210ENST00000571456 POLA1P09884 1462 aaPredicted RBP36.05■■■■□ 3.36
VPS53-210ENST00000571456 CLASP1Q7Z460 1538 aa36.03■■■■□ 3.36
VPS53-210ENST00000571456 RAD54L2Q9Y4B4 1467 aa35.94■■■■□ 3.34
VPS53-210ENST00000571456 TDRD9Q8NDG6 1382 aaKnown RBP35.94■■■■□ 3.34
VPS53-210ENST00000571456 SYNJ1O43426 1573 aa35.93■■■■□ 3.34
VPS53-210ENST00000571456 SNAPC4Q5SXM2 1469 aa35.92■■■■□ 3.34
VPS53-210ENST00000571456 CHMP7Q8WUX9 453 aaPredicted RBP35.88■■■■□ 3.33
VPS53-210ENST00000571456 SOGA1O94964 1423 aa35.88■■■■□ 3.33
VPS53-210ENST00000571456 WDR97A6NE52 1622 aa35.83■■■■□ 3.33
VPS53-210ENST00000571456 MAGI1Q96QZ7 1491 aaPredicted RBP35.8■■■■□ 3.32
VPS53-210ENST00000571456 GAPVD1Q14C86 1478 aa35.73■■■■□ 3.31
VPS53-210ENST00000571456 SYNJ2O15056 1496 aa35.7■■■■□ 3.31
VPS53-210ENST00000571456 GRIN2BQ13224 1484 aa35.69■■■■□ 3.3
VPS53-210ENST00000571456 FGD5Q6ZNL6 1462 aa35.68■■■■□ 3.3
VPS53-210ENST00000571456 PBRM1Q86U86 1689 aa35.5■■■■□ 3.27
VPS53-210ENST00000571456 CUX1P39880 1505 aa35.48■■■■□ 3.27
VPS53-210ENST00000571456 WRNQ14191 1432 aaPredicted RBP eCLIP35.42■■■■□ 3.26
VPS53-210ENST00000571456 ERCC6L2Q5T890 1561 aa35.38■■■■□ 3.25
VPS53-210ENST00000571456 BIVM-ERCC5R4GMW8 1640 aa35.35■■■■□ 3.25
VPS53-210ENST00000571456 TOP2BQ02880 1626 aa35.34■■■■□ 3.25
VPS53-210ENST00000571456 KIF13AQ9H1H9 1805 aa35.3■■■■□ 3.24
VPS53-210ENST00000571456 ABCA5Q8WWZ7 1642 aa35.27■■■■□ 3.24
VPS53-210ENST00000571456 CEP170Q5SW79 1584 aa35.25■■■■□ 3.23
VPS53-210ENST00000571456 GRIN2AQ12879 1464 aa35.22■■■■□ 3.23
VPS53-210ENST00000571456 ABCA10Q8WWZ4 1543 aa35.22■■■■□ 3.23
VPS53-210ENST00000571456 NUP160Q12769 1436 aa35.15■■■■□ 3.22
VPS53-210ENST00000571456 SHROOM2Q13796 1616 aa35.14■■■■□ 3.22
VPS53-210ENST00000571456 ADAMTS12P58397 1594 aa35.08■■■■□ 3.21
VPS53-210ENST00000571456 ILDR1Q86SU0 546 aaPredicted RBP34.96■■■■□ 3.19
VPS53-210ENST00000571456 FAM69CQ0P6D2 419 aa34.95■■■■□ 3.19
VPS53-210ENST00000571456 ABCC10Q5T3U5 1492 aa34.93■■■■□ 3.18
VPS53-210ENST00000571456 FHAD1B1AJZ9 1412 aa34.93■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms