RNA–Protein interactions for RNA: ENST00000567234.1

LINC00543-201, long intergenic non-protein coding RNA 543, humanhuman

BASIC

Gene LINC00543, Length 1,845 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00543-201ENST00000567234 ARHGAP35Q9NRY4 1499 aa35.78■■■■□ 3.32
LINC00543-201ENST00000567234 APLP2Q06481 763 aa35.73■■■■□ 3.31
LINC00543-201ENST00000567234 ADAMTS12P58397 1594 aa35.68■■■■□ 3.3
LINC00543-201ENST00000567234 SNAPC4Q5SXM2 1469 aa35.67■■■■□ 3.3
LINC00543-201ENST00000567234 CTTNBP2Q8WZ74 1663 aa35.63■■■■□ 3.29
LINC00543-201ENST00000567234 ZEB1P37275 1124 aaPredicted RBP35.6■■■■□ 3.29
LINC00543-201ENST00000567234 FHAD1B1AJZ9 1412 aa35.59■■■■□ 3.29
LINC00543-201ENST00000567234 TTBK1Q5TCY1 1321 aaPredicted RBP35.59■■■■□ 3.29
LINC00543-201ENST00000567234 MAGI1Q96QZ7 1491 aaPredicted RBP35.53■■■■□ 3.28
LINC00543-201ENST00000567234 EFCAB5A4FU69 1503 aa35.52■■■■□ 3.28
LINC00543-201ENST00000567234 MAP3K1Q13233 1512 aa35.43■■■■□ 3.26
LINC00543-201ENST00000567234 SYNJ2O15056 1496 aa35.41■■■■□ 3.26
LINC00543-201ENST00000567234 GRIN2AQ12879 1464 aa35.39■■■■□ 3.26
LINC00543-201ENST00000567234 FBLN2P98095 1184 aa35.36■■■■□ 3.25
LINC00543-201ENST00000567234 CHMP7Q8WUX9 453 aaPredicted RBP35.34■■■■□ 3.25
LINC00543-201ENST00000567234 CHD1O14646 1710 aa35.28■■■■□ 3.24
LINC00543-201ENST00000567234 TIAM1Q13009 1591 aa35.27■■■■□ 3.24
LINC00543-201ENST00000567234 SAMD9Q5K651 1589 aa35.27■■■■□ 3.24
LINC00543-201ENST00000567234 KANK4Q5T7N3 995 aaPredicted RBP35.27■■■■□ 3.24
LINC00543-201ENST00000567234 CEP170Q5SW79 1584 aa35.23■■■■□ 3.23
LINC00543-201ENST00000567234 FHOD3Q2V2M9 1422 aa35.22■■■■□ 3.23
LINC00543-201ENST00000567234 PCF11O94913 1555 aaKnown RBP35.22■■■■□ 3.23
LINC00543-201ENST00000567234 FYCO1Q9BQS8 1478 aa35.21■■■■□ 3.23
LINC00543-201ENST00000567234 FMN1Q68DA7 1419 aa35.19■■■■□ 3.22
LINC00543-201ENST00000567234 CFAP43Q8NDM7 1665 aa35.19■■■■□ 3.22
LINC00543-201ENST00000567234 CASKIN1Q8WXD9 1431 aa35.17■■■■□ 3.22
LINC00543-201ENST00000567234 IQGAP2Q13576 1575 aa35.16■■■■□ 3.22
LINC00543-201ENST00000567234 P3H3Q8IVL6 736 aa35.15■■■■□ 3.22
LINC00543-201ENST00000567234 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.13■■■■□ 3.21
LINC00543-201ENST00000567234 NUP160Q12769 1436 aa35.13■■■■□ 3.21
LINC00543-201ENST00000567234 RRBP1Q9P2E9 1410 aaKnown RBP35.13■■■■□ 3.21
LINC00543-201ENST00000567234 CCER1Q8TC90 406 aaPredicted RBP35.12■■■■□ 3.21
LINC00543-201ENST00000567234 LRRC9Q6ZRR7 1453 aa35.1■■■■□ 3.21
LINC00543-201ENST00000567234 KIAA0586Q9BVV6 1533 aa35.1■■■■□ 3.21
LINC00543-201ENST00000567234 HNRNPUL2Q1KMD3 747 aaKnown RBP35■■■■□ 3.19
LINC00543-201ENST00000567234 UGGT2Q9NYU1 1516 aa34.96■■■■□ 3.19
LINC00543-201ENST00000567234 CCNB3Q8WWL7 1395 aa34.94■■■■□ 3.18
LINC00543-201ENST00000567234 ATP1B4Q9UN42 357 aaPredicted RBP34.86■■■■□ 3.17
LINC00543-201ENST00000567234 DISP1Q96F81 1524 aa34.86■■■■□ 3.17
LINC00543-201ENST00000567234 JPH4Q96JJ6 628 aa34.83■■■■□ 3.17
LINC00543-201ENST00000567234 LRRIQ1Q96JM4 1722 aa34.83■■■■□ 3.17
LINC00543-201ENST00000567234 KIAA0556O60303 1618 aa34.82■■■■□ 3.17
LINC00543-201ENST00000567234 CLASP1Q7Z460 1538 aa34.8■■■■□ 3.16
LINC00543-201ENST00000567234 PHLDB1Q86UU1 1377 aa34.78■■■■□ 3.16
LINC00543-201ENST00000567234 CCDC18Q5T9S5 1454 aa34.75■■■■□ 3.15
LINC00543-201ENST00000567234 HECW1Q76N89 1606 aa34.75■■■■□ 3.15
LINC00543-201ENST00000567234 MYT1Q01538 1121 aa34.74■■■■□ 3.15
LINC00543-201ENST00000567234 SHROOM2Q13796 1616 aa34.74■■■■□ 3.15
LINC00543-201ENST00000567234 PRG4Q92954 1404 aaPredicted RBP34.68■■■■□ 3.14
LINC00543-201ENST00000567234 MTUS2Q5JR59 1369 aa34.68■■■■□ 3.14
LINC00543-201ENST00000567234 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.67■■■■□ 3.14
LINC00543-201ENST00000567234 EHBP1L1Q8N3D4 1523 aa34.67■■■■□ 3.14
LINC00543-201ENST00000567234 CARMIL2Q6F5E8 1435 aa34.64■■■■□ 3.14
LINC00543-201ENST00000567234 ERCC6L2Q5T890 1561 aa34.63■■■■□ 3.14
LINC00543-201ENST00000567234 SUPT6HQ7KZ85 1726 aaKnown RBP34.61■■■■□ 3.13
LINC00543-201ENST00000567234 OSCARQ8IYS5 282 aa34.6■■■■□ 3.13
LINC00543-201ENST00000567234 EPRSP07814 1512 aaKnown RBP34.58■■■■□ 3.13
LINC00543-201ENST00000567234 CLSPNQ9HAW4 1339 aa34.57■■■■□ 3.12
LINC00543-201ENST00000567234 NCOA2Q15596 1464 aa34.53■■■■□ 3.12
LINC00543-201ENST00000567234 FGD6Q6ZV73 1430 aa34.52■■■■□ 3.12
LINC00543-201ENST00000567234 ARHGEF11O15085 1522 aa34.51■■■■□ 3.11
LINC00543-201ENST00000567234 SCAF1Q9H7N4 1312 aaKnown RBP34.5■■■■□ 3.11
LINC00543-201ENST00000567234 MAGI3Q5TCQ9 1506 aa34.49■■■■□ 3.11
LINC00543-201ENST00000567234 RAPGEF6Q8TEU7 1601 aa34.48■■■■□ 3.11
LINC00543-201ENST00000567234 DHX57Q6P158 1386 aaKnown RBP34.47■■■■□ 3.11
LINC00543-201ENST00000567234 FAM50AQ14320 339 aaKnown RBP34.46■■■■□ 3.11
LINC00543-201ENST00000567234 MYOM3Q5VTT5 1437 aa34.46■■■■□ 3.11
LINC00543-201ENST00000567234 PLB1Q6P1J6 1458 aa34.44■■■■□ 3.1
LINC00543-201ENST00000567234 ITGAEP38570 1179 aa34.44■■■■□ 3.1
LINC00543-201ENST00000567234 CDK13Q14004 1512 aaKnown RBP34.42■■■■□ 3.1
LINC00543-201ENST00000567234 SETD5Q9C0A6 1442 aa34.39■■■■□ 3.1
LINC00543-201ENST00000567234 PTPRGP23470 1445 aa34.39■■■■□ 3.1
LINC00543-201ENST00000567234 NUP153P49790 1475 aaKnown RBP34.39■■■■□ 3.1
LINC00543-201ENST00000567234 ARID3CA6NKF2 412 aa34.37■■■■□ 3.09
LINC00543-201ENST00000567234 RAB3GAP2Q9H2M9 1393 aa34.35■■■■□ 3.09
LINC00543-201ENST00000567234 ABCA8O94911 1581 aa34.34■■■■□ 3.09
LINC00543-201ENST00000567234 PTPN23Q9H3S7 1636 aa34.3■■■■□ 3.08
LINC00543-201ENST00000567234 TCOF1Q13428 1488 aaKnown RBP34.28■■■■□ 3.08
LINC00543-201ENST00000567234 MIA2Q96PC5 1412 aa34.25■■■■□ 3.07
LINC00543-201ENST00000567234 CDK11AQ9UQ88 783 aaPredicted RBP34.25■■■■□ 3.07
LINC00543-201ENST00000567234 UACAQ9BZF9 1416 aa34.19■■■■□ 3.06
LINC00543-201ENST00000567234 TROQ12816 1431 aaPredicted RBP34.14■■■■□ 3.06
LINC00543-201ENST00000567234 HFM1A2PYH4 1435 aa34.13■■■■□ 3.05
LINC00543-201ENST00000567234 PTPRKQ15262 1439 aa34.12■■■■□ 3.05
LINC00543-201ENST00000567234 ADCY10Q96PN6 1610 aa34.11■■■■□ 3.05
LINC00543-201ENST00000567234 ABCC2Q92887 1545 aa34.11■■■■□ 3.05
LINC00543-201ENST00000567234 ATP10BO94823 1461 aa34.1■■■■□ 3.05
LINC00543-201ENST00000567234 MAPKBP1O60336 1514 aa34.07■■■■□ 3.04
LINC00543-201ENST00000567234 ACIN1Q9UKV3 1341 aaKnown RBP34.06■■■■□ 3.04
LINC00543-201ENST00000567234 AKNAQ7Z591 1439 aa34.02■■■■□ 3.04
LINC00543-201ENST00000567234 ITSN2Q9NZM3 1697 aa34.01■■■■□ 3.03
LINC00543-201ENST00000567234 RIMBP3CA6NJZ7 1639 aa34.01■■■■□ 3.03
LINC00543-201ENST00000567234 RIMBP3BA6NNM3 1639 aa34.01■■■■□ 3.03
LINC00543-201ENST00000567234 RIMBP3Q9UFD9 1639 aa34.01■■■■□ 3.03
LINC00543-201ENST00000567234 UHRF1BP1LA0JNW5 1464 aa34■■■■□ 3.03
LINC00543-201ENST00000567234 NAIPQ13075 1403 aa34■■■■□ 3.03
LINC00543-201ENST00000567234 ZNF316A6NFI3 1004 aaPredicted RBP33.99■■■■□ 3.03
LINC00543-201ENST00000567234 GCC2Q8IWJ2 1684 aa33.96■■■■□ 3.03
LINC00543-201ENST00000567234 ZCCHC11Q5TAX3 1644 aaKnown RBP33.95■■■■□ 3.02
LINC00543-201ENST00000567234 KIF14Q15058 1648 aa33.91■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms